arXiv subjects

Silvia Biasotti

Publications and source records attributed to Silvia Biasotti.

At least 19 recordsLinked to original sources

arXiv2025

Automated Monitoring of Cultural Heritage Artifacts Using Semantic Segmentation

This paper addresses the critical need for automated crack detection in the preservation of cultural heritage through semantic segmentation. We present a comparative study of U-Net architectures, using various convolutional neural network (CNN) encoders, for pixel-level crack identification on statues and monuments. A comparative quantitative evaluation is performed on the test set of the OmniCrack30k dataset [1] using popular segmentation metrics including Mean Intersection over Union (mIoU), Dice coefficient, and Jaccard index. This is complemented by an out-of-distribution qualitative evaluation on an unlabeled test set of real-world cracked statues and monuments. Our findings provide valuable insights into the capabilities of different CNN- based encoders for fine-grained crack segmentation. We show that the models exhibit promising generalization capabilities to unseen cultural heritage contexts, despite never having been explicitly trained on images of statues or monuments.

cs.CV↗

arXiv2025

Symmetria: A Synthetic Dataset for Learning in Point Clouds

Unlike image or text domains that benefit from an abundance of large-scale datasets, point cloud learning techniques frequently encounter limitations due to the scarcity of extensive datasets. To overcome this limitation, we present Symmetria, a formula-driven dataset that can be generated at any arbitrary scale. By construction, it ensures the absolute availability of precise ground truth, promotes data-efficient experimentation by requiring fewer samples, enables broad generalization across diverse geometric settings, and offers easy extensibility to new tasks and modalities. Using the concept of symmetry, we create shapes with known structure and high variability, enabling neural networks to learn point cloud features effectively. Our results demonstrate that this dataset is highly effective for point cloud self-supervised pre-training, yielding models with strong performance in downstream tasks such as classification and segmentation, which also show good few-shot learning capabilities. Additionally, our dataset can support fine-tuning models to classify real-world objects, highlighting our approach's practical utility and application. We also introduce a challenging task for symmetry detection and provide a benchmark for baseline comparisons. A significant advantage of our approach is the public availability of the dataset, the accompanying code, and the ability to generate very large collections, promoting further research and innovation in point cloud learning.

cs.CV↗

arXiv2025

SHREC 2025: Protein surface shape retrieval including electrostatic potential

This SHREC 2025 track dedicated to protein surface shape retrieval involved 9 participating teams. We evaluated the performance in retrieval of 15 proposed methods on a large dataset of 11,555 protein surfaces with calculated electrostatic potential (a key molecular surface descriptor). The performance in retrieval of the proposed methods was evaluated through different metrics (Accuracy, Balanced accuracy, F1 score, Precision and Recall). The best retrieval performance was achieved by the proposed methods that used the electrostatic potential complementary to molecular surface shape. This observation was also valid for classes with limited data which highlights the importance of taking into account additional molecular surface descriptors.

cs.CV↗

arXiv2024

Mesh Optimization for the Virtual Element Method: How Small Can an Agglomerated Mesh Become?

We present an optimization procedure for generic polygonal or polyhedral meshes, tailored for the Virtual Element Method (VEM). Once the local quality of the mesh elements is analyzed through a quality indicator specific to the VEM, groups of elements are agglomerated to optimize the global mesh quality. The resulting discretization is significantly lighter: we can remove up to 80$\%$ of the mesh elements, based on a user-set parameter, thus reducing the number of faces, edges, and vertices. This results in a drastic reduction of the total number of degrees of freedom associated with a discrete problem defined over the mesh with the VEM, in particular, for high-order formulations. We show how the VEM convergence rate is preserved in the optimized meshes, and the approximation errors are comparable with those obtained with the original ones. We observe that the optimization has a regularization effect over low-quality meshes, removing the most pathological elements. This regularization effect is evident in cases where the original meshes cause the VEM to diverge, while the optimized meshes lead to convergence. We conclude by showing how the optimization of a real CAD model can be used effectively in the simulation of a time-dependent problem.

math.NA↗

arXiv2023

GEO-Nav: a geometric dataset of voltage-gated sodium channels

Voltage-gated sodium (Nav) channels constitute a prime target for drug design and discovery, given their implication in various diseases such as epilepsy, migraine and ataxia to name a few. In this regard, performing morphological analysis is a crucial step in comprehensively understanding their biological function and mechanism, as well as in uncovering subtle details of their mechanism that may be elusive to experimental observations. Despite their tremendous therapeutic potential, drug design resources are deficient, particularly in terms of accurate and comprehensive geometric information. This paper presents a geometric dataset of molecular surfaces that are representative of Nav channels in mammals. For each structure we provide three representations and a number of geometric measures, including length, volume and straightness of the recognized channels. To demonstrate the effective use of GEO-Nav, we have tested it on two methods belonging to two different categories of approaches: a sphere-based and a tessellation-based method.

q-bio.BM↗

arXiv2023

Recognising geometric primitives in 3D point clouds of mechanical CAD objects

The problem faced in this paper concerns the recognition of simple and complex geometric primitives in point clouds resulting from scans of mechanical CAD objects. A large number of points, the presence of noise, outliers, missing or redundant parts and uneven distribution are the main problems to be addressed to meet this need. In this article we propose a solution, based on the Hough transform, that can recognize simple and complex geometric primitives and is robust to noise, outliers, and missing parts. Additionally, we can extract a series of geometric descriptors that uniquely characterize a primitive and, based on them, aggregate the output into maximal or compound primitives, thus reducing oversegmentation. The results presented in the paper demonstrate the robustness of the method and its competitiveness with respect to other solutions proposed in the literature.

cs.GR↗

arXiv2022

SHREC 2022: Protein-ligand binding site recognition

This paper presents the methods that have participated in the SHREC 2022 contest on protein-ligand binding site recognition. The prediction of protein-ligand binding regions is an active research domain in computational biophysics and structural biology and plays a relevant role for molecular docking and drug design. The goal of the contest is to assess the effectiveness of computational methods in recognizing ligand binding sites in a protein based on its geometrical structure. Performances of the segmentation algorithms are analyzed according to two evaluation scores describing the capacity of a putative pocket to contact a ligand and to pinpoint the correct binding region. Despite some methods perform remarkably, we show that simple non-machine-learning approaches remain very competitive against data-driven algorithms. In general, the task of pocket detection remains a challenging learning problem which suffers of intrinsic difficulties due to the lack of negative examples (data imbalance problem).

q-bio.BM↗

arXiv2022

Mesh Quality Agglomeration algorithm for the Virtual Element Method applied to Discrete Fracture Networks

We propose a quality-based optimization strategy to reduce the total number of degrees of freedom associated to a discrete problem defined over a polygonal tessellation with the Virtual Element Method. The presented Quality Agglomeration algorithm relies only on the geometrical properties of the problem polygonal mesh, agglomerating groups of neighboring elements. We test this approach in the context of fractured porous media, in which the generation of a global conforming mesh on a Discrete Fracture Network leads to a considerable number of unknowns, due to the presence of highly complex geometries and the significant size of the computational domains. We show the efficiency and the robustness of our approach, applied independently on each fracture for different network configurations, exploiting the flexibility of the Virtual Element Method in handling general polygonal elements.

math.NA↗

arXiv2022

SHREC 2022: pothole and crack detection in the road pavement using images and RGB-D data

This paper describes the methods submitted for evaluation to the SHREC 2022 track on pothole and crack detection in the road pavement. A total of 7 different runs for the semantic segmentation of the road surface are compared, 6 from the participants plus a baseline method. All methods exploit Deep Learning techniques and their performance is tested using the same environment (i.e.: a single Jupyter notebook). A training set, composed of 3836 semantic segmentation image/mask pairs and 797 RGB-D video clips collected with the latest depth cameras was made available to the participants. The methods are then evaluated on the 496 image/mask pairs in the validation set, on the 504 pairs in the test set and finally on 8 video clips. The analysis of the results is based on quantitative metrics for image segmentation and qualitative analysis of the video clips. The participation and the results show that the scenario is of great interest and that the use of RGB-D data is still challenging in this context.

cs.CV↗

arXiv2022

SHREC 2022: Fitting and recognition of simple geometric primitives on point clouds

This paper presents the methods that have participated in the SHREC 2022 track on the fitting and recognition of simple geometric primitives on point clouds. As simple primitives we mean the classical surface primitives derived from constructive solid geometry, i.e., planes, spheres, cylinders, cones and tori. The aim of the track is to evaluate the quality of automatic algorithms for fitting and recognising geometric primitives on point clouds. Specifically, the goal is to identify, for each point cloud, its primitive type and some geometric descriptors. For this purpose, we created a synthetic dataset, divided into a training set and a test set, containing segments perturbed with different kinds of point cloud artifacts. Among the six participants to this track, two are based on direct methods, while four are either fully based on deep learning or combine direct and neural approaches. The performance of the methods is evaluated using various classification and approximation measures.

cs.GR↗

arXiv2022

Fitting and recognition of geometric primitives in segmented 3D point clouds using a localized voting procedure

The automatic creation of geometric models from point clouds has numerous applications in CAD (e.g., reverse engineering, manufacturing, assembling) and, more in general, in shape modelling and processing. Given a segmented point cloud representing a man-made object, we propose a method for recognizing simple geometric primitives and their interrelationships. Our approach is based on the Hough transform (HT) for its ability to deal with noise, missing parts and outliers. In our method we introduce a novel technique for processing segmented point clouds that, through a voting procedure, is able to provide an initial estimate of the geometric parameters characterizing each primitive type. By using these estimates, we localize the search of the optimal solution in a dimensionally-reduced parameter space thus making it efficient to extend the HT to more primitives than those that are generally found in the literature, i.e. planes and spheres. Then, we extract a number of geometric descriptors that uniquely characterize a segment, and, on the basis of these descriptors, we show how to aggregate parts of primitives (segments). Experiments on both synthetic and industrial scans reveal the robustness of the primitive fitting method and its effectiveness for inferring relations among segments.

cs.CV↗

arXiv2022

Polyhedron Kernel Computation Using a Geometric Approach

The geometric kernel (or simply the kernel) of a polyhedron is the set of points from which the whole polyhedron is visible. Whilst the computation of the kernel for a polygon has been largely addressed in the literature, fewer methods have been proposed for polyhedra. The most acknowledged solution for the kernel estimation is to solve a linear programming problem. On the contrary, we present a geometric approach that extends our previous method, optimizes it anticipating all calculations in a pre-processing step and introduces the use of geometric exact predicates. Experimental results show that our method is more efficient than the algebraic approach on generic tessellations and in detecting if a polyhedron is not star-shaped. Details on the technical implementation and discussions on pros and cons of the method are also provided.

cs.CG↗

arXiv2021

Polyhedral Mesh Quality Indicator for the Virtual Element Method

We present the design of a mesh quality indicator that can predict the behavior of the Virtual Element Method (VEM) on a given mesh family or finite sequence of polyhedral meshes (dataset). The mesh quality indicator is designed to measure the violation of the mesh regularity assumptions that are normally considered in the convergence analysis. We investigate the behavior of this new mathematical tool on the lowest-order conforming approximation of the three-dimensional Poisson equation. This work also assesses the convergence rate of the VEM when applied to very general polyhedral meshes, including non-convex and skewed three-dimensional elements. Such meshes are created within an original mesh generation framework, which is designed to allow the generation of meshes with very different sizes, connectivity and geometrical properties. The obtained results show a significant correlation between the quality measured a priori by the indicator and the effective performance of the VEM.

math.NA↗

arXiv2021

A Geometric Approach for Computing the Kernel of a Polyhedron

We present a geometric algorithm to compute the geometric kernel of a generic polyhedron. The geometric kernel (or simply kernel) is definedas the set of points from which the whole polyhedron is visible. Whilst the computation of the kernel for a polygon has already been largely addressed in the literature, less has been done for polyhedra. Currently, the principal implementation of the kernel estimation is based on the solution of a linear programming problem. We compare against it on several examples, showing that our method is more efficient in analysing the elements of a generic tessellation. Details on the technical implementation and discussions on pros and cons of the method are also provided.

cs.CG↗

arXiv2021

SHREC 2021: Retrieval and classification of protein surfaces equipped with physical and chemical properties

This paper presents the methods that have participated in the SHREC 2021 contest on retrieval and classification of protein surfaces on the basis of their geometry and physicochemical properties. The goal of the contest is to assess the capability of different computational approaches to identify different conformations of the same protein, or the presence of common sub-parts, starting from a set of molecular surfaces. We addressed two problems: defining the similarity solely based on the surface geometry or with the inclusion of physicochemical information, such as electrostatic potential, amino acid hydrophobicity, and the presence of hydrogen bond donors and acceptors. Retrieval and classification performances, with respect to the single protein or the existence of common sub-sequences, are analysed according to a number of information retrieval indicators.

q-bio.BM↗

arXiv2021

VEM and the Mesh

In this work we report some results, obtained within the framework of the ERC Project CHANGE, on the impact on the performance of the virtual element method of the shape of the polygonal elements of the underlying mesh. More in detail, after reviewing the state of the art, we present a) an experimental analysis of the convergence of the VEM under condition violating the standard shape regularity assumptions, b) an analysis of the correlation between some mesh quality metrics and a set of different performance indexes, and c) a suitably designed mesh quality indicator, aimed at predicting the quality of the performance of the VEM on a given mesh.

math.NA↗

arXiv2021

The role of mesh quality and mesh quality indicators in the Virtual Element Method

Since its introduction, the Virtual Element Method (VEM) was shown to be able to deal with a large variety of polygons, while achieving good convergence rates. The regularity assumptions proposed in the VEM literature to guarantee the convergence on a theoretical basis are therefore quite general. They have been deduced in analogy to the similar conditions developed in the Finite Element Methods (FEMs) analysis. In this work, we experimentally show that the VEM still converges with almost optimal rates and low errors in the L2 and H1 norms even if we significantly break the regularity assumptions that are used in the literature. These results suggest that the regularity assumptions proposed so far might be overestimated. We also exhibit examples on which the VEM sub-optimally converges or diverges. Finally, we introduce a mesh quality indicator that experimentally correlates the entity of the violation of the regularity assumptions and the performance of the VEM solution, thus predicting if a dataset is potentially critical for VEM.

math.NA↗

arXiv2020

Data-driven quasi-interpolant spline surfaces for point cloud approximation

In this paper we investigate a local surface approximation, the Weighted Quasi Interpolant Spline Approximation (wQISA), specifically designed for large and noisy point clouds. We briefly describe the properties of the wQISA representation and introduce a novel data-driven implementation, which combines prediction capability and complexity efficiency. We provide an extended comparative analysis with other continuous approximations on real data, including different types of surfaces and levels of noise, such as 3D models, terrain data and digital environmental data.

math.NA↗