SearcharxivSearch

arXiv subjects

Simon Fontaine

Publications and source records attributed to Simon Fontaine.

2 recordsLinked to original sources

Bayesian Global Fr\'echet Regression via Weak Conditional Expectations

Fr\'echet regression provides a versatile framework for modeling responses in metric spaces with Euclidean predictors, yet current methodologies rely almost exclusively on frequentist approaches. We propose a Bayesian framework for Fr\'echet regression that offers a principled way of incorporating prior information into nonlinear global Fr\'echet regression. By targeting a novel Fr\'echet Bayes rule, we reduce the object-valued regression problem to a collection of tractable scalar regression tasks. Our approach allows for a controlled interpolation between the prior and the data-driven frequentist estimate, facilitating effective shrinkage toward informed values. While initially derived under Gaussian assumptions, we demonstrate that our framework is robust to model misspecification by establishing its validity under moment conditions via weak conditional expectations. The numerical properties of the proposed methodology are demonstrated in simulation studies and an application to microbiome compositional data, where we show that leveraging an auxiliary cohort to inform the prior significantly enhances predictive performance in a targeted, small-scale study

stat.ME

Locally sparse varying coefficient mixed model with application to longitudinal microbiome differential abundance

Differential abundance (DA) analysis in microbiome studies has recently been used to uncover a plethora of associations between microbial composition and various health conditions. While current approaches to DA typically apply only to cross-sectional data, many studies feature a longitudinal design to better understand the underlying microbial dynamics. To study DA in longitudinal microbial studies, we introduce a novel varying coefficient mixed-effects model with local sparsity. The proposed method can identify time intervals of significant group differences while accounting for temporal dependence. Specifically, we exploit a penalized kernel smoothing approach for parameter estimation and include a random effect to account for serial correlation. In particular, our method operates effectively regardless of whether sampling times are shared across subjects, accommodating irregular sampling and missing observations. Simulation studies demonstrate the necessity of modeling dependence for precise estimation and support recovery. The application of our method to a longitudinal study of mice oral microbiome during cancer development revealed significant scientific insights that were otherwise not discernible through cross-sectional analyses. An R implementation is available at https://github.com/fontaine618/LSVCMM.

stat.ME