SearcharxivSearch

arXiv subjects

Sina Esmaeili

Publications and source records attributed to Sina Esmaeili.

2 recordsLinked to original sources

Coord2Region: A Python Package for Mapping 3D Brain Coordinates to Atlas Labels, Literature, and AI Summaries

We present Coord2Region, an open-source Python package that streamlines coordinate-based neuroimaging workflows by automatically mapping 3D brain coordinates (e.g., MNI or Talairach) to anatomical regions across multiple atlases. The package links mapped coordinates to meta-analytic resources via the Neuroimaging Meta-Analysis Research Environment (NiMARE) , providing direct integration with Neurosynth and NeuroQuery. This directly connects coordinates and regions to the broader neuroimaging literature. In addition to atlas-based labeling and literature retrieval, Coord2Region offers an optional large language model (LLM) functionality that generates text summaries of linked studies and illustrative images of queried regions. These AI-assisted features are intended to support interpretation and exploration, while remaining clearly complementary to peer-reviewed literature and established neuroimaging tools. Coord2Region provides a unified pipeline with a robust command-line interface, flexible dataset management, and provider-agnostic LLM utilities, and it supports both single-coordinate and high-throughput batch queries with nearest-region fallback for volume and surface atlases. Furthermore, Coord2Region includes a web interface for interactive configuration (via JSON Schema forms) and cloud execution (via Hugging Face), enabling users to build YAML configurations and run analyses in-browser without local installation. Together, these capabilities lower friction, reduce manual errors, and improve reproducibility in coordinate-centric neuroimaging workflows, promoting more robust and transparent research practices.

q-bio.NC

Single top quark production in $t$-channel at the LHC in Noncommutative Space-Time

We study the production cross section of the $t$-channel single top quark at the LHC in the noncommutative space-time. It is shown that the deviation of the $t$-channel single top cross section from the Standard Model value because of noncommutativity is significant when $|\vecθ| \gtrsim 10^{-4}$ GeV$^{-2}$. Using the present experimental precision in measurement of the $t$-channel cross section, we apply upper limit on the noncommutative parameter. When a single top quark decays, there is a significant amount of angular correlation, in the top quark rest frame between the top spin direction and the direction of the charged lepton momentum from its decay. We study the effect of noncommutativity on the spin correlation and we find that depending on the noncommutative scale, the angular correlation can enhance considerably. Then, we provide limits on the noncommutative scale for various possible relative uncertainties on the spin correlation measurement.

hep-ph