arXiv subjects

Siqi Fan

Publications and source records attributed to Siqi Fan.

At least 37 records · Page 2Linked to original sources

arXiv2025

Exploiting Contextual Knowledge in LLMs through V-usable Information based Layer Enhancement

Large Language Models (LLMs) have demonstrated remarkable capabilities in various tasks, yet they often struggle with context-faithfulness generations that properly reflect contextual knowledge. While existing approaches focus on enhancing the decoding strategies, they ignore the fundamental mechanism of how contextual information is processed within LLMs' internal states. As a result, LLMs remain limited in their ability to fully leverage contextual knowledge. In this paper, we propose Context-aware Layer Enhancement (CaLE), a novel intervention method that enhances the utilization of contextual knowledge within LLMs' internal representations. By employing V-usable information analysis, CaLE strategically amplifies the growth of contextual information at an optimal layer, thereby enriching representations in the final layer. Our experiments demonstrate that CaLE effectively improves context-faithful generation in Question-Answering tasks, particularly in scenarios involving unknown or conflicting contextual knowledge.

cs.CL↗

arXiv2025

PharMolixFM: All-Atom Foundation Models for Molecular Modeling and Generation

Structural biology relies on accurate three-dimensional biomolecular structures to advance our understanding of biological functions, disease mechanisms, and therapeutics. While recent advances in deep learning have enabled the development of all-atom foundation models for molecular modeling and generation, existing approaches face challenges in generalization due to the multi-modal nature of atomic data and the lack of comprehensive analysis of training and sampling strategies. To address these limitations, we propose PharMolixFM, a unified framework for constructing all-atom foundation models based on multi-modal generative techniques. Our framework includes three variants using state-of-the-art multi-modal generative models. By formulating molecular tasks as a generalized denoising process with task-specific priors, PharMolixFM achieves robust performance across various structural biology applications. Experimental results demonstrate that PharMolixFM-Diff achieves competitive prediction accuracy in protein-small-molecule docking (83.9% vs. 90.2% RMSD < 2Å, given pocket) with significantly improved inference speed. Moreover, we explore the empirical inference scaling law by introducing more sampling repeats or steps. Our code and model are available at https://github.com/PharMolix/OpenBioMed.

q-bio.BM↗

arXiv2025

IROAM: Improving Roadside Monocular 3D Object Detection Learning from Autonomous Vehicle Data Domain

In autonomous driving, The perception capabilities of the ego-vehicle can be improved with roadside sensors, which can provide a holistic view of the environment. However, existing monocular detection methods designed for vehicle cameras are not suitable for roadside cameras due to viewpoint domain gaps. To bridge this gap and Improve ROAdside Monocular 3D object detection, we propose IROAM, a semantic-geometry decoupled contrastive learning framework, which takes vehicle-side and roadside data as input simultaneously. IROAM has two significant modules. In-Domain Query Interaction module utilizes a transformer to learn content and depth information for each domain and outputs object queries. Cross-Domain Query Enhancement To learn better feature representations from two domains, Cross-Domain Query Enhancement decouples queries into semantic and geometry parts and only the former is used for contrastive learning. Experiments demonstrate the effectiveness of IROAM in improving roadside detector's performance. The results validate that IROAM has the capabilities to learn cross-domain information.

cs.CV↗

arXiv2025

FLM-101B: An Open LLM and How to Train It with $100K Budget

Large language models (LLMs) are considered important approaches towards foundational machine intelligence, achieving remarkable success in Natural Language Processing and multimodal tasks, among others. However, the carbon footprints and financial costs originating from heavy pre-training computation is a non-negligible issue. Progressive training methods, inspired by the neurogenesis process that grows neural structures, have shown potential to accelerate LLM pre-training. However, the algorithms, implementation, and practices for progressively training LLMs beyond 100B parameters remain underexplored. In this paper, we show that our model, namely FLM-101B, trained with our growth strategy under a budget of \$100K, reaches 80\% of the baselines' performances with only 10\% of their floating-point operations. We believe that further studies on progressive training will benefit the community by cutting down the costs and promoting green AI. The checkpoint of FLM-101B is released at https://huggingface.co/CofeAI/FLM-101B.

cs.CL↗

arXiv2024

End-to-End Autonomous Driving through V2X Cooperation

Cooperatively utilizing both ego-vehicle and infrastructure sensor data via V2X communication has emerged as a promising approach for advanced autonomous driving. However, current research mainly focuses on improving individual modules, rather than taking end-to-end learning to optimize final planning performance, resulting in underutilized data potential. In this paper, we introduce UniV2X, a pioneering cooperative autonomous driving framework that seamlessly integrates all key driving modules across diverse views into a unified network. We propose a sparse-dense hybrid data transmission and fusion mechanism for effective vehicle-infrastructure cooperation, offering three advantages: 1) Effective for simultaneously enhancing agent perception, online mapping, and occupancy prediction, ultimately improving planning performance. 2) Transmission-friendly for practical and limited communication conditions. 3) Reliable data fusion with interpretability of this hybrid data. We implement UniV2X, as well as reproducing several benchmark methods, on the challenging DAIR-V2X, the real-world cooperative driving dataset. Experimental results demonstrate the effectiveness of UniV2X in significantly enhancing planning performance, as well as all intermediate output performance. The project is available at \href{https://github.com/AIR-THU/UniV2X}{https://github.com/AIR-THU/UniV2X}.

cs.RO↗

arXiv2024

Learning Cooperative Trajectory Representations for Motion Forecasting

Motion forecasting is an essential task for autonomous driving, and utilizing information from infrastructure and other vehicles can enhance forecasting capabilities. Existing research mainly focuses on leveraging single-frame cooperative information to enhance the limited perception capability of the ego vehicle, while underutilizing the motion and interaction context of traffic participants observed from cooperative devices. In this paper, we propose a forecasting-oriented representation paradigm to utilize motion and interaction features from cooperative information. Specifically, we present V2X-Graph, a representative framework to achieve interpretable and end-to-end trajectory feature fusion for cooperative motion forecasting. V2X-Graph is evaluated on V2X-Seq in vehicle-to-infrastructure (V2I) scenarios. To further evaluate on vehicle-to-everything (V2X) scenario, we construct the first real-world V2X motion forecasting dataset V2X-Traj, which contains multiple autonomous vehicles and infrastructure in every scenario. Experimental results on both V2X-Seq and V2X-Traj show the advantage of our method. We hope both V2X-Graph and V2X-Traj will benefit the further development of cooperative motion forecasting. Find the project at https://github.com/AIR-THU/V2X-Graph.

cs.CV↗

arXiv2024

Second-Order Analysis of CSMA Protocols for Age-of-Information Minimization

This paper introduces a general framework to analyze and optimize age-of-information (AoI) in CSMA protocols for distributed uplink transmissions. The proposed framework combines two theoretical approaches. First, it employs second-order analysis that characterizes all random processes by their respective means and temporal variances and approximates AoI as a function of the mean and temporal variance of the packet delivery process. Second, it employs mean-field approximation to derive the mean and temporal variance of the packet delivery process for one node in the presence of interference from others. To demonstrate the utility of this framework, this paper applies it to the age-threshold ALOHA policy and identifies parameter settings that outperform those previously suggested as optimal in the original work that introduced this policy. Simulation results demonstrate that our framework provides precise AoI approximations and achieves significantly better performance, even in networks with a small number of users.

cs.IT↗

arXiv2024

Mitigating Training Imbalance in LLM Fine-Tuning via Selective Parameter Merging

Supervised fine-tuning (SFT) is crucial for adapting Large Language Models (LLMs) to specific tasks. In this work, we demonstrate that the order of training data can lead to significant training imbalances, potentially resulting in performance degradation. Consequently, we propose to mitigate this imbalance by merging SFT models fine-tuned with different data orders, thereby enhancing the overall effectiveness of SFT. Additionally, we introduce a novel technique, "parameter-selection merging," which outperforms traditional weighted-average methods on five datasets. Further, through analysis and ablation studies, we validate the effectiveness of our method and identify the sources of performance improvements.

cs.CL↗

arXiv2024

Not All Layers of LLMs Are Necessary During Inference

Due to the large number of parameters, the inference phase of Large Language Models (LLMs) is resource-intensive. However, not all requests posed to LLMs are equally difficult to handle. Through analysis, we show that for some tasks, LLMs can achieve results comparable to the final output at some intermediate layers. That is, not all layers of LLMs are necessary during inference. If we can predict at which layer the inferred results match the final results (produced by evaluating all layers), we could significantly reduce the inference cost. To this end, we propose a simple yet effective algorithm named AdaInfer to adaptively terminate the inference process for an input instance. AdaInfer relies on easily obtainable statistical features and classic classifiers like SVM. Experiments on well-known LLMs like the Llama2 series and OPT, show that AdaInfer can achieve an average of 17.8% pruning ratio, and up to 43% on sentiment tasks, with nearly no performance drop (<1%). Because AdaInfer does not alter LLM parameters, the LLMs incorporated with AdaInfer maintain generalizability across tasks.

cs.CL↗

arXiv2024

SpikeLM: Towards General Spike-Driven Language Modeling via Elastic Bi-Spiking Mechanisms

Towards energy-efficient artificial intelligence similar to the human brain, the bio-inspired spiking neural networks (SNNs) have advantages of biological plausibility, event-driven sparsity, and binary activation. Recently, large-scale language models exhibit promising generalization capability, making it a valuable issue to explore more general spike-driven models. However, the binary spikes in existing SNNs fail to encode adequate semantic information, placing technological challenges for generalization. This work proposes the first fully spiking mechanism for general language tasks, including both discriminative and generative ones. Different from previous spikes with {0,1} levels, we propose a more general spike formulation with bi-directional, elastic amplitude, and elastic frequency encoding, while still maintaining the addition nature of SNNs. In a single time step, the spike is enhanced by direction and amplitude information; in spike frequency, a strategy to control spike firing rate is well designed. We plug this elastic bi-spiking mechanism in language modeling, named SpikeLM. It is the first time to handle general language tasks with fully spike-driven models, which achieve much higher accuracy than previously possible. SpikeLM also greatly bridges the performance gap between SNNs and ANNs in language modeling. Our code is available at https://github.com/Xingrun-Xing/SpikeLM.

cs.NE↗

arXiv2024

Optimizing Age of Information in Random Access Networks: A Second-Order Approach for Active/Passive Users

In this paper, we study the moments of the Age of Information (AoI) for both active and passive users in a random access network. In this network, active users broadcast sensing data, while passive users detect in-band radio activities from out-of-network devices, such as jammers. Collisions occur when multiple active users transmit simultaneously. Passive users can detect radio activities only when no active user transmits. Each active user's transmission behavior follows a Markov process. We aim to minimize the weighted sum of any moments of AoI for both user types. To achieve this, we employ a second-order analysis of system behavior. Specifically, we characterize an active user's transmission Markov process using its mean and temporal variance. We show that any moment of the AoI can be approximated by a function of these two parameters. This insight enables us to analyze and optimize the transmission Markov process for active users. We apply this strategy to two different random access models. Simulation results show that policies derived from this strategy outperform other baseline policies.

cs.NI↗

arXiv2024

QUEST: Query Stream for Practical Cooperative Perception

Cooperative perception can effectively enhance individual perception performance by providing additional viewpoint and expanding the sensing field. Existing cooperation paradigms are either interpretable (result cooperation) or flexible (feature cooperation). In this paper, we propose the concept of query cooperation to enable interpretable instance-level flexible feature interaction. To specifically explain the concept, we propose a cooperative perception framework, termed QUEST, which let query stream flow among agents. The cross-agent queries are interacted via fusion for co-aware instances and complementation for individual unaware instances. Taking camera-based vehicle-infrastructure perception as a typical practical application scene, the experimental results on the real-world dataset, DAIR-V2X-Seq, demonstrate the effectiveness of QUEST and further reveal the advantage of the query cooperation paradigm on transmission flexibility and robustness to packet dropout. We hope our work can further facilitate the cross-agent representation interaction for better cooperative perception in practice.

cs.CV↗

arXiv2024

RCooper: A Real-world Large-scale Dataset for Roadside Cooperative Perception

The value of roadside perception, which could extend the boundaries of autonomous driving and traffic management, has gradually become more prominent and acknowledged in recent years. However, existing roadside perception approaches only focus on the single-infrastructure sensor system, which cannot realize a comprehensive understanding of a traffic area because of the limited sensing range and blind spots. Orienting high-quality roadside perception, we need Roadside Cooperative Perception (RCooper) to achieve practical area-coverage roadside perception for restricted traffic areas. Rcooper has its own domain-specific challenges, but further exploration is hindered due to the lack of datasets. We hence release the first real-world, large-scale RCooper dataset to bloom the research on practical roadside cooperative perception, including detection and tracking. The manually annotated dataset comprises 50k images and 30k point clouds, including two representative traffic scenes (i.e., intersection and corridor). The constructed benchmarks prove the effectiveness of roadside cooperation perception and demonstrate the direction of further research. Codes and dataset can be accessed at: https://github.com/AIR-THU/DAIR-RCooper.

cs.CV↗

arXiv2024

EMIFF: Enhanced Multi-scale Image Feature Fusion for Vehicle-Infrastructure Cooperative 3D Object Detection

In autonomous driving, cooperative perception makes use of multi-view cameras from both vehicles and infrastructure, providing a global vantage point with rich semantic context of road conditions beyond a single vehicle viewpoint. Currently, two major challenges persist in vehicle-infrastructure cooperative 3D (VIC3D) object detection: $1)$ inherent pose errors when fusing multi-view images, caused by time asynchrony across cameras; $2)$ information loss in transmission process resulted from limited communication bandwidth. To address these issues, we propose a novel camera-based 3D detection framework for VIC3D task, Enhanced Multi-scale Image Feature Fusion (EMIFF). To fully exploit holistic perspectives from both vehicles and infrastructure, we propose Multi-scale Cross Attention (MCA) and Camera-aware Channel Masking (CCM) modules to enhance infrastructure and vehicle features at scale, spatial, and channel levels to correct the pose error introduced by camera asynchrony. We also introduce a Feature Compression (FC) module with channel and spatial compression blocks for transmission efficiency. Experiments show that EMIFF achieves SOTA on DAIR-V2X-C datasets, significantly outperforming previous early-fusion and late-fusion methods with comparable transmission costs.

cs.CV↗

arXiv2023

POAR: Efficient Policy Optimization via Online Abstract State Representation Learning

While the rapid progress of deep learning fuels end-to-end reinforcement learning (RL), direct application, especially in high-dimensional space like robotic scenarios still suffers from low sample efficiency. Therefore State Representation Learning (SRL) is proposed to specifically learn to encode task-relevant features from complex sensory data into low-dimensional states. However, the pervasive implementation of SRL is usually conducted by a decoupling strategy in which the observation-state mapping is learned separately, which is prone to over-fit. To handle such problem, we summarize the state-of-the-art (SOTA) SRL sub-tasks in previous works and present a new algorithm called Policy Optimization via Abstract Representation which integrates SRL into the policy optimization phase. Firstly, We engage RL loss to assist in updating SRL model so that the states can evolve to meet the demand of RL and maintain a good physical interpretation. Secondly, we introduce a dynamic loss weighting mechanism so that both models can efficiently adapt to each other. Thirdly, we introduce a new SRL prior called domain resemblance to leverage expert demonstration to improve SRL interpretations. Finally, we provide a real-time access of state graph to monitor the course of learning. Experiments indicate that POAR significantly outperforms SOTA RL algorithms and decoupling SRL strategies in terms of sample efficiency and final rewards. We empirically verify POAR to efficiently handle tasks in high dimensions and facilitate training real-life robots directly from scratch.

cs.RO↗

arXiv2023

SpiderMesh: Spatial-aware Demand-guided Recursive Meshing for RGB-T Semantic Segmentation

For semantic segmentation in urban scene understanding, RGB cameras alone often fail to capture a clear holistic topology in challenging lighting conditions. Thermal signal is an informative additional channel that can bring to light the contour and fine-grained texture of blurred regions in low-quality RGB image. Aiming at practical RGB-T (thermal) segmentation, we systematically propose a Spatial-aware Demand-guided Recursive Meshing (SpiderMesh) framework that: 1) proactively compensates inadequate contextual semantics in optically-impaired regions via a demand-guided target masking algorithm; 2) refines multimodal semantic features with recursive meshing to improve pixel-level semantic analysis performance. We further introduce an asymmetric data augmentation technique M-CutOut, and enable semi-supervised learning to fully utilize RGB-T labels only sparsely available in practical use. Extensive experiments on MFNet and PST900 datasets demonstrate that SpiderMesh achieves state-of-the-art performance on standard RGB-T segmentation benchmarks.

cs.CV↗

arXiv2023

BioMedGPT: Open Multimodal Generative Pre-trained Transformer for BioMedicine

Foundation models (FMs) have exhibited remarkable performance across a wide range of downstream tasks in many domains. Nevertheless, general-purpose FMs often face challenges when confronted with domain-specific problems, due to their limited access to the proprietary training data in a particular domain. In biomedicine, there are various biological modalities, such as molecules, proteins, and cells, which are encoded by the language of life and exhibit significant modality gaps with human natural language. In this paper, we introduce BioMedGPT, an open multimodal generative pre-trained transformer (GPT) for biomedicine, to bridge the gap between the language of life and human natural language. BioMedGPT allows users to easily ``communicate'' with diverse biological modalities through free text, which is the first of its kind. BioMedGPT aligns different biological modalities with natural language via a large generative language model, namely, BioMedGPT-LM. We publish BioMedGPT-10B, which unifies the feature spaces of molecules, proteins, and natural language via encoding and alignment. Through fine-tuning, BioMedGPT-10B outperforms or is on par with human and significantly larger general-purpose foundation models on the biomedical QA task. It also demonstrates promising performance in the molecule QA and protein QA tasks, which could greatly accelerate the discovery of new drugs and therapeutic targets. In addition, BioMedGPT-LM-7B is the first large generative language model based on Llama2 in the biomedical domain, therefore is commercial friendly. Both BioMedGPT-10B and BioMedGPT-LM-7B are open-sourced to the research community. In addition, we publish the datasets that are meticulously curated for the alignment of multi-modalities, i.e., PubChemQA and UniProtQA. All the models, codes, and datasets are available at \url{https://github.com/PharMolix/OpenBioMed}.

cs.CE↗

arXiv2023

Minimizing Moments of AoI for Both Active and Passive Users through Second-Order Analysis

In this paper, we address the optimization problem of moments of Age of Information (AoI) for active and passive users in a random access network. In this network, active users broadcast sensing data while passive users only receive signals. Collisions occur when multiple active users transmit simultaneously, and passive users are unable to receive signals while any active user is transmitting. Each active user follows a Markov process for their transmissions. We aim to minimize the weighted sum of any moments of AoI for both active and passive users in this network. To achieve this, we employ a second-order analysis to analyze the system. Specifically, we characterize an active user's transmission Markov process by its mean and temporal process. We show that any moment of the AoI can be expressed a function of the mean and temporal variance, which, in turn, enables us to derive the optimal transmission Markov process. Our simulation results demonstrate that this proposed strategy outperforms other baseline policies that use different active user transmission models.

cs.IT↗