arXiv subjects

Siqiang Luo

Publications and source records attributed to Siqiang Luo.

At least 37 records · Page 2Linked to original sources

arXiv2025

Don't Forget Range Delete! Enhancing LSM-based Key-Value Stores with More Compatible Lookups and Deletes

LSM-trees are featured by out-of-place updates, where key deletion is handled by inserting a tombstone to mark its staleness instead of removing it in place. This defers actual removal to compactions with greatly reduced overhead. However, this classic strategy struggles with another fundamental operator--range deletes--which removes all keys within a specified range, requiring the system to insert numerous tombstones and causing severe performance issues. To address this, modern LSM-based systems introduce range tombstones that record the start and end keys to avoid per-key tombstones. Although this achieves impressive range delete efficiency, such a solution is incompatible with lookups. In particular, our experiments show that point lookup latency can increase by 30% even with just 1% range deletions in workloads. Further to our surprise, this issue has not been raised before, though the range tombstone solution has been employed for more than five years. To address this critical performance issue, we propose GLORAN, an efficient range delete method that can be integrated into modern LSM-based systems and offers desirable range deletion performance without compromising point lookup efficiency. It introduces a global index that allows point lookups to quickly locate relevant ranges without retrieving many irrelevant elements, reducing the I/O complexity from O(N/λ) to either O(\log^2 N/(λF)) or O(ϕ\log N/F), where 1/λis the ratio of range deletes, and ϕis the FPR of Bloom filters in LSM-trees. Furthermore, we design an entry validity estimator to further enhance expected I/O cost to O(ε\log^2 N/(λF)) for looking up existing keys. Extensive evaluations indicate that GLORAN consistently outperforms baselines, while achieving up to 10.6 times faster point lookups and 2.7 times higher overall throughput compared to the SOTA method.

cs.DB↗

arXiv2025

Right Answer at the Right Time - Temporal Retrieval-Augmented Generation via Graph Summarization

Question answering in temporal knowledge graphs requires retrieval that is both time-consistent and efficient. Existing RAG methods are largely semantic and typically neglect explicit temporal constraints, which leads to time-inconsistent answers and inflated token usage. We propose STAR-RAG, a temporal GraphRAG framework that relies on two key ideas: building a time-aligned rule graph and conducting propagation on this graph to narrow the search space and prioritize semantically relevant, time-consistent evidence. This design enforces temporal proximity during retrieval, reduces the candidate set of retrieval results, and lowers token consumption without sacrificing accuracy. Compared with existing temporal RAG approaches, STAR-RAG eliminates the need for heavy model training and fine-tuning, thereby reducing computational cost and significantly simplifying deployment.Extensive experiments on real-world temporal KG datasets show that our method achieves improved answer accuracy while consuming fewer tokens than strong GraphRAG baselines.

cs.IR↗

arXiv2025

MoSE: Unveiling Structural Patterns in Graphs via Mixture of Subgraph Experts

While graph neural networks (GNNs) have achieved great success in learning from graph-structured data, their reliance on local, pairwise message passing restricts their ability to capture complex, high-order subgraph patterns. leading to insufficient structural expressiveness. Recent efforts have attempted to enhance structural expressiveness by integrating random walk kernels into GNNs. However, these methods are inherently designed for graph-level tasks, which limits their applicability to other downstream tasks such as node classification. Moreover, their fixed kernel configurations hinder the model's flexibility in capturing diverse subgraph structures. To address these limitations, this paper proposes a novel Mixture of Subgraph Experts (MoSE) framework for flexible and expressive subgraph-based representation learning across diverse graph tasks. Specifically, MoSE extracts informative subgraphs via anonymous walks and dynamically routes them to specialized experts based on structural semantics, enabling the model to capture diverse subgraph patterns with improved flexibility and interpretability. We further provide a theoretical analysis of MoSE's expressivity within the Subgraph Weisfeiler-Lehman (SWL) Test, proving that it is more powerful than SWL. Extensive experiments, together with visualizations of learned subgraph experts, demonstrate that MoSE not only outperforms competitive baselines but also provides interpretable insights into structural patterns learned by the model.

cs.LG↗

arXiv2025

A Comprehensive Benchmark on Spectral GNNs: The Impact on Efficiency, Memory, and Effectiveness

With recent advancements in graph neural networks (GNNs), spectral GNNs have received increasing popularity by virtue of their ability to retrieve graph signals in the spectral domain. These models feature uniqueness in efficient computation as well as rich expressiveness, which stems from advanced management and profound understanding of graph data. However, few systematic studies have been conducted to assess spectral GNNs, particularly in benchmarking their efficiency, memory consumption, and effectiveness in a unified and fair manner. There is also a pressing need to select spectral models suitable for learning specific graph data and deploying them to massive web-scale graphs, which is currently constrained by the varied model designs and training settings. In this work, we extensively benchmark spectral GNNs with a focus on the spectral perspective, demystifying them as spectral graph filters. We analyze and categorize 35 GNNs with 27 corresponding filters, spanning diverse formulations and utilizations of the graph data. Then, we implement the filters within a unified spectral-oriented framework with dedicated graph computations and efficient training schemes. In particular, our implementation enables the deployment of spectral GNNs over million-scale graphs and various tasks with comparable performance and less overhead. Thorough experiments are conducted on the graph filters with comprehensive metrics on effectiveness and efficiency, offering novel observations and practical guidelines that are only available from our evaluations across graph scales. Different from the prevailing belief, our benchmark reveals an intricate landscape regarding the effectiveness and efficiency of spectral graph filters, demonstrating the potential to achieve desirable performance through tailored spectral manipulation of graph data.

cs.LG↗

arXiv2025

SEQ-GPT: LLM-assisted Spatial Query via Example

Contemporary spatial services such as online maps predominantly rely on user queries for location searches. However, the user experience is limited when performing complex tasks, such as searching for a group of locations simultaneously. In this study, we examine the extended scenario known as Spatial Exemplar Query (SEQ), where multiple relevant locations are jointly searched based on user-specified examples. We introduce SEQ-GPT, a spatial query system powered by Large Language Models (LLMs) towards more versatile SEQ search using natural language. The language capabilities of LLMs enable unique interactive operations in the SEQ process, including asking users to clarify query details and dynamically adjusting the search based on user feedback. We also propose a tailored LLM adaptation pipeline that aligns natural language with structured spatial data and queries through dialogue synthesis and multi-model cooperation. SEQ-GPT offers an end-to-end demonstration for broadening spatial search with realistic data and application scenarios.

cs.AI↗

arXiv2025

Unifews: You Need Fewer Operations for Efficient Graph Neural Networks

Graph Neural Networks (GNNs) have shown promising performance, but at the cost of resource-intensive operations on graph-scale matrices. To reduce computational overhead, previous studies attempt to sparsify the graph or network parameters, but with limited flexibility and precision boundaries. In this work, we propose Unifews, a joint sparsification technique to unify graph and weight matrix operations and enhance GNN learning efficiency. The Unifews design enables adaptive compression across GNN layers with progressively increased sparsity, and is applicable to a variety of architectures with on-the-fly simplification. Theoretically, we establish a novel framework to characterize sparsified GNN learning in view of the graph optimization process, showing that Unifews effectively approximates the learning objective with bounded error and reduced computational overhead. Extensive experiments demonstrate that Unifews achieves efficiency improvements with comparable or better accuracy, including 10-20x matrix operation reduction and up to 100x acceleration on graphs up to billion-edge scale.

cs.LG↗

arXiv2025

Evaluating Learned Indexes in LSM-tree Systems: Benchmarks,Insights and Design Choices

LSM-tree-based data stores are widely used in industry due to their exceptional performance. However, as data volumes grow, efficiently querying large-scale databases becomes increasingly challenging. To address this, recent studies attempted to integrate learned indexes into LSM-trees to enhance lookup performance, which has demonstrated promising improvements. Despite this, only a limited range of learned index types has been considered, and the strengths and weaknesses of different learned indexes remain unclear, making them difficult for practical use. To fill this gap, we provide a comprehensive and systematic benchmark to pursue an in-depth understanding of learned indexes in LSM-tree systems. In this work, we summarize the workflow of 8 existing learned indexes and analyze the associated theoretical cost. We also identify several key factors that significantly influence the performance of learned indexes and conclude them with a novel configuration space, including various index types, boundary positions, and granularity. Moreover, we implement different learned index designs on a unified platform to evaluate across various configurations. Surprisingly, our experiments reveal several unexpected insights, such as the marginal lookup enhancement when allocating a large memory budget to learned indexes and modest retraining overhead of learned indexes. Besides, we also offer practical guidelines to help developers intelligently select and tune learned indexes for custom use cases.

cs.DB↗

arXiv2025

Towards Graph Foundation Models: Training on Knowledge Graphs Enables Transferability to General Graphs

Inspired by the success of large language models, there is a trend toward developing graph foundation models to conduct diverse downstream tasks in various domains. However, current models often require extra fine-tuning to apply their learned structural and semantic representations to new graphs, which limits their versatility. Recent breakthroughs in zero-shot inductive reasoning on knowledge graphs (KGs), offer us a new perspective on extending KG reasoning to general graph applications. In this paper, we introduce SCR, a unified graph reasoning framework designed to train on knowledge graphs and effectively generalize across a wide range of graph tasks and domains. We begin by designing the task-specific KG structures to establish a unified topology for different task formats. Then we propose semantic-conditioned message passing, a novel mechanism addressing the inherent semantic isolation in traditional KG reasoning, by jointly modeling structural and semantic invariance patterns in graph representations. To demonstrate the effectiveness, we evaluate the inductive reasoning capability of SCR using 38 diverse graph datasets, covering node-level, link-level, and graph-level tasks across multiple domains. Our results show substantial performance gains over existing foundation models and supervised baselines, highlighting the efficacy and adaptability of our approach.

cs.LG↗

arXiv2025

How to Grow an LSM-tree? Towards Bridging the Gap Between Theory and Practice

LSM-tree based key-value stores are widely adopted as the data storage backend in modern big data applications. The LSM-tree grows with data ingestion, by either adding levels with fixed level capacities (dubbed as vertical scheme) or increasing level capacities with fixed number of levels (dubbed as horizontal scheme). The vertical scheme leads the trend in recent system designs in RocksDB, LevelDB, and WiredTiger, whereas the horizontal scheme shows a decline in being adopted in the industry. The growth scheme profoundly impacts the LSM system performance in various aspects such as read, write and space costs. This paper attempts to give a new insight into a fundamental design question -- how to grow an LSM-tree to attain more desirable performance? Our analysis highlights the limitations of the vertical scheme in achieving an optimal read-write trade-off and the horizontal scheme in managing space cost effectively. Building on the analysis, we present a novel approach, Vertiorizon, which combines the strengths of both the vertical and horizontal schemes to achieve a superior balance between lookup, update, and space costs. Its adaptive design makes it highly compatible with a wide spectrum of workloads. Compared to the vertical scheme, Vertiorizon significantly improves the read-write performance trade-off. In contrast to the horizontal scheme, Vertiorizon greatly extends the trade-off range by a non-trivial generalization of Bentley and Saxe's theory, while substantially reducing space costs. When integrated with RocksDB, Vertiorizon demonstrates better write performance than the vertical scheme, while incurring about six times less additional space cost compared to the horizontal scheme.

cs.DB↗

arXiv2025

RAGDoll: Efficient Offloading-based Online RAG System on a Single GPU

Retrieval-Augmented Generation (RAG) enhances large language model (LLM) generation quality by incorporating relevant external knowledge. However, deploying RAG on consumer-grade platforms is challenging due to limited memory and the increasing scale of both models and knowledge bases. In this work, we introduce RAGDoll, a resource-efficient, self-adaptive RAG serving system integrated with LLMs, specifically designed for resource-constrained platforms. RAGDoll exploits the insight that RAG retrieval and LLM generation impose different computational and memory demands, which in a traditional serial workflow result in substantial idle times and poor resource utilization. Based on this insight, RAGDoll decouples retrieval and generation into parallel pipelines, incorporating joint memory placement and dynamic batch scheduling strategies to optimize resource usage across diverse hardware devices and workloads. Extensive experiments demonstrate that RAGDoll adapts effectively to various hardware configurations and LLM scales, achieving up to 3.6 times speedup in average latency compared to serial RAG systems based on vLLM.

cs.DC↗

arXiv2025

Finding Near-Optimal Maximum Set of Disjoint $k$-Cliques in Real-World Social Networks

A $k$-clique is a dense graph, consisting of $k$ fully-connected nodes, that finds numerous applications, such as community detection and network analysis. In this paper, we study a new problem, that finds a maximum set of disjoint $k$-cliques in a given large real-world graph with a user-defined fixed number $k$, which can contribute to a good performance of teaming collaborative events in online games. However, this problem is NP-hard when $k \geq 3$, making it difficult to solve. To address that, we propose an efficient lightweight method that avoids significant overheads and achieves a $k$-approximation to the optimal, which is equipped with several optimization techniques, including the ordering method, degree estimation in the clique graph, and a lightweight implementation. Besides, to handle dynamic graphs that are widely seen in real-world social networks, we devise an efficient indexing method with careful swapping operations, leading to the efficient maintenance of a near-optimal result with frequent updates in the graph. In various experiments on several large graphs, our proposed approaches significantly outperform the competitors by up to 2 orders of magnitude in running time and 13.3\% in the number of computed disjoint $k$-cliques, which demonstrates the superiority of the proposed approaches in terms of efficiency and effectiveness.

cs.SI↗

arXiv2025

Aster: Enhancing LSM-structures for Scalable Graph Database

There is a proliferation of applications requiring the management of large-scale, evolving graphs under workloads with intensive graph updates and lookups. Driven by this challenge, we introduce Poly-LSM, a high-performance key-value storage engine for graphs with the following novel techniques: (1) Poly-LSM is embedded with a new design of graph-oriented LSM-tree structure that features a hybrid storage model for concisely and effectively storing graph data. (2) Poly-LSM utilizes an adaptive mechanism to handle edge insertions and deletions on graphs with optimized I/O efficiency. (3) Poly-LSM exploits the skewness of graph data to encode the key-value entries. Building upon this foundation, we further implement Aster, a robust and versatile graph database that supports Gremlin query language facilitating various graph applications. In our experiments, we compared Aster against several mainstream real-world graph databases. The results demonstrate that Aster outperforms all baseline graph databases, especially on large-scale graphs. Notably, on the billion-scale Twitter graph dataset, Aster achieves up to 17x throughput improvement compared to the best-performing baseline graph system.

cs.DB↗

arXiv2024

DHIL-GT: Scalable Graph Transformer with Decoupled Hierarchy Labeling

Graph Transformer (GT) has recently emerged as a promising neural network architecture for learning graph-structured data. However, its global attention mechanism with quadratic complexity concerning the graph scale prevents wider application to large graphs. While current methods attempt to enhance GT scalability by altering model architecture or encoding hierarchical graph data, our analysis reveals that these models still suffer from the computational bottleneck related to graph-scale operations. In this work, we target the GT scalability issue and propose DHIL-GT, a scalable Graph Transformer that simplifies network learning by fully decoupling the graph computation to a separate stage in advance. DHIL-GT effectively retrieves hierarchical information by exploiting the graph labeling technique, as we show that the graph label hierarchy is more informative than plain adjacency by offering global connections while promoting locality, and is particularly suitable for handling complex graph patterns such as heterophily. We further design subgraph sampling and positional encoding schemes for precomputing model input on top of graph labels in an end-to-end manner. The training stage thus favorably removes graph-related computations, leading to ideal mini-batch capability and GPU utilization. Notably, the precomputation and training processes of DHIL-GT achieve complexities linear to the number of graph edges and nodes, respectively. Extensive experiments demonstrate that DHIL-GT is efficient in terms of computational boost and mini-batch capability over existing scalable Graph Transformer designs on large-scale benchmarks, while achieving top-tier effectiveness on both homophilous and heterophilous graphs.

cs.LG↗

arXiv2024

A Survey on Learning from Graphs with Heterophily: Recent Advances and Future Directions

Graphs are structured data that models complex relations between real-world entities. Heterophilic graphs, where linked nodes are prone to be with different labels or dissimilar features, have recently attracted significant attention and found many real-world applications. Meanwhile, increasing efforts have been made to advance learning from graphs with heterophily. Various graph heterophily measures, benchmark datasets, and learning paradigms are emerging rapidly. In this survey, we comprehensively review existing works on learning from graphs with heterophily. First, we overview over 500 publications, of which more than 340 are directly related to heterophilic graphs. After that, we survey existing metrics of graph heterophily and list recent benchmark datasets. Further, we systematically categorize existing methods based on a hierarchical taxonomy including GNN models, learning paradigms and practical applications. In addition, broader topics related to graph heterophily are also included. Finally, we discuss the primary challenges of existing studies and highlight promising avenues for future research.

cs.SI↗

arXiv2024

CAMAL: Optimizing LSM-trees via Active Learning

We use machine learning to optimize LSM-tree structure, aiming to reduce the cost of processing various read/write operations. We introduce a new approach Camal, which boasts the following features: (1) ML-Aided: Camal is the first attempt to apply active learning to tune LSM-tree based key-value stores. The learning process is coupled with traditional cost models to improve the training process; (2) Decoupled Active Learning: backed by rigorous analysis, Camal adopts active learning paradigm based on a decoupled tuning of each parameter, which further accelerates the learning process; (3) Easy Extrapolation: Camal adopts an effective mechanism to incrementally update the model with the growth of the data size; (4) Dynamic Mode: Camal is able to tune LSM-tree online under dynamically changing workloads; (5) Significant System Improvement: By integrating Camal into a full system RocksDB, the system performance improves by 28% on average and up to 8x compared to a state-of-the-art RocksDB design.

cs.DB↗

arXiv2024

LLM as Prompter: Low-resource Inductive Reasoning on Arbitrary Knowledge Graphs

Knowledge Graph (KG) inductive reasoning, which aims to infer missing facts from new KGs that are not seen during training, has been widely adopted in various applications. One critical challenge of KG inductive reasoning is handling low-resource scenarios with scarcity in both textual and structural aspects. In this paper, we attempt to address this challenge with Large Language Models (LLMs). Particularly, we utilize the state-of-the-art LLMs to generate a graph-structural prompt to enhance the pre-trained Graph Neural Networks (GNNs), which brings us new methodological insights into the KG inductive reasoning methods, as well as high generalizability in practice. On the methodological side, we introduce a novel pretraining and prompting framework ProLINK, designed for low-resource inductive reasoning across arbitrary KGs without requiring additional training. On the practical side, we experimentally evaluate our approach on 36 low-resource KG datasets and find that ProLINK outperforms previous methods in three-shot, one-shot, and zero-shot reasoning tasks, exhibiting average performance improvements by 20%, 45%, and 147%, respectively. Furthermore, ProLINK demonstrates strong robustness for various LLM promptings as well as full-shot scenarios.

cs.AI↗

arXiv2024

Resurrecting Label Propagation for Graphs with Heterophily and Label Noise

Label noise is a common challenge in large datasets, as it can significantly degrade the generalization ability of deep neural networks. Most existing studies focus on noisy labels in computer vision; however, graph models encompass both node features and graph topology as input, and become more susceptible to label noise through message-passing mechanisms. Recently, only a few works have been proposed to tackle the label noise on graphs. One significant limitation is that they operate under the assumption that the graph exhibits homophily and that the labels are distributed smoothly. However, real-world graphs can exhibit varying degrees of heterophily, or even be dominated by heterophily, which results in the inadequacy of the current methods. In this paper, we study graph label noise in the context of arbitrary heterophily, with the aim of rectifying noisy labels and assigning labels to previously unlabeled nodes. We begin by conducting two empirical analyses to explore the impact of graph homophily on graph label noise. Following observations, we propose a efficient algorithm, denoted as $R^{2}LP$. Specifically, $R^{2}LP$ is an iterative algorithm with three steps: (1) reconstruct the graph to recover the homophily property, (2) utilize label propagation to rectify the noisy labels, (3) select high-confidence labels to retain for the next iteration. By iterating these steps, we obtain a set of correct labels, ultimately achieving high accuracy in the node classification task. The theoretical analysis is also provided to demonstrate its remarkable denoising effect. Finally, we perform experiments on ten benchmark datasets with different levels of graph heterophily and various types of noise. In these experiments, we compare the performance of $R^{2}LP$ against ten typical baseline methods. Our results illustrate the superior performance of the proposed $R^{2}LP$.

cs.LG↗

arXiv2024

Distributed Graph Embedding with Information-Oriented Random Walks

Graph embedding maps graph nodes to low-dimensional vectors, and is widely adopted in machine learning tasks. The increasing availability of billion-edge graphs underscores the importance of learning efficient and effective embeddings on large graphs, such as link prediction on Twitter with over one billion edges. Most existing graph embedding methods fall short of reaching high data scalability. In this paper, we present a general-purpose, distributed, information-centric random walk-based graph embedding framework, DistGER, which can scale to embed billion-edge graphs. DistGER incrementally computes information-centric random walks. It further leverages a multi-proximity-aware, streaming, parallel graph partitioning strategy, simultaneously achieving high local partition quality and excellent workload balancing across machines. DistGER also improves the distributed Skip-Gram learning model to generate node embeddings by optimizing the access locality, CPU throughput, and synchronization efficiency. Experiments on real-world graphs demonstrate that compared to state-of-the-art distributed graph embedding frameworks, including KnightKing, DistDGL, and Pytorch-BigGraph, DistGER exhibits 2.33x-129x acceleration, 45% reduction in cross-machines communication, and > 10% effectiveness improvement in downstream tasks.

cs.DC↗