arXiv subjects

Siyuan Shen

Publications and source records attributed to Siyuan Shen.

33 records · Page 2Linked to original sources

arXiv2024

LLAMP: Assessing Network Latency Tolerance of HPC Applications with Linear Programming

The shift towards high-bandwidth networks driven by AI workloads in data centers and HPC clusters has unintentionally aggravated network latency, adversely affecting the performance of communication-intensive HPC applications. As large-scale MPI applications often exhibit significant differences in their network latency tolerance, it is crucial to accurately determine the extent of network latency an application can withstand without significant performance degradation. Current approaches to assessing this metric often rely on specialized hardware or network simulators, which can be inflexible and time-consuming. In response, we introduce LLAMP, a novel toolchain that offers an efficient, analytical approach to evaluating HPC applications' network latency tolerance using the LogGPS model and linear programming. LLAMP equips software developers and network architects with essential insights for optimizing HPC infrastructures and strategically deploying applications to minimize latency impacts. Through our validation on a variety of MPI applications like MILC, LULESH, and LAMMPS, we demonstrate our tool's high accuracy, with relative prediction errors generally below 2%. Additionally, we include a case study of the ICON weather and climate model to illustrate LLAMP's broad applicability in evaluating collective algorithms and network topologies.

cs.DC↗

arXiv2024

Emotion Neural Transducer for Fine-Grained Speech Emotion Recognition

The mainstream paradigm of speech emotion recognition (SER) is identifying the single emotion label of the entire utterance. This line of works neglect the emotion dynamics at fine temporal granularity and mostly fail to leverage linguistic information of speech signal explicitly. In this paper, we propose Emotion Neural Transducer for fine-grained speech emotion recognition with automatic speech recognition (ASR) joint training. We first extend typical neural transducer with emotion joint network to construct emotion lattice for fine-grained SER. Then we propose lattice max pooling on the alignment lattice to facilitate distinguishing emotional and non-emotional frames. To adapt fine-grained SER to transducer inference manner, we further make blank, the special symbol of ASR, serve as underlying emotion indicator as well, yielding Factorized Emotion Neural Transducer. For typical utterance-level SER, our ENT models outperform state-of-the-art methods on IEMOCAP in low word error rate. Experiments on IEMOCAP and the latest speech emotion diarization dataset ZED also demonstrate the superiority of fine-grained emotion modeling. Our code is available at https://github.com/ECNU-Cross-Innovation-Lab/ENT.

cs.SD↗

arXiv2024

OSMOSIS: Enabling Multi-Tenancy in Datacenter SmartNICs

Multi-tenancy is essential for unleashing SmartNIC's potential in datacenters. Our systematic analysis in this work shows that existing on-path SmartNICs have resource multiplexing limitations. For example, existing solutions lack multi-tenancy capabilities such as performance isolation and QoS provisioning for compute and IO resources. Compared to standard NIC data paths with a well-defined set of offloaded functions, unpredictable execution times of SmartNIC kernels make conventional approaches for multi-tenancy and QoS insufficient. We fill this gap with OSMOSIS, a SmartNICs resource manager co-design. OSMOSIS extends existing OS mechanisms to enable dynamic hardware resource multiplexing of the on-path packet processing data plane. We integrate OSMOSIS within an open-source RISC-V-based 400Gbit/s SmartNIC. Our performance results demonstrate that OSMOSIS fully supports multi-tenancy and enables broader adoption of SmartNICs in datacenters with low overhead.

cs.NI↗

arXiv2023

EyeLS: Shadow-Guided Instrument Landing System for Intraocular Target Approaching in Robotic Eye Surgery

Robotic ophthalmic surgery is an emerging technology to facilitate high-precision interventions such as retina penetration in subretinal injection and removal of floating tissues in retinal detachment depending on the input imaging modalities such as microscopy and intraoperative OCT (iOCT). Although iOCT is explored to locate the needle tip within its range-limited ROI, it is still difficult to coordinate iOCT's motion with the needle, especially at the initial target-approaching stage. Meanwhile, due to 2D perspective projection and thus the loss of depth information, current image-based methods cannot effectively estimate the needle tip's trajectory towards both retinal and floating targets. To address this limitation, we propose to use the shadow positions of the target and the instrument tip to estimate their relative depth position and accordingly optimize the instrument tip's insertion trajectory until the tip approaches targets within iOCT's scanning area. Our method succeeds target approaching on a retina model, and achieves an average depth error of 0.0127 mm and 0.3473 mm for floating and retinal targets respectively in the surgical simulator without damaging the retina.

cs.RO↗

arXiv2023

Cached Operator Reordering: A Unified View for Fast GNN Training

Graph Neural Networks (GNNs) are a powerful tool for handling structured graph data and addressing tasks such as node classification, graph classification, and clustering. However, the sparse nature of GNN computation poses new challenges for performance optimization compared to traditional deep neural networks. We address these challenges by providing a unified view of GNN computation, I/O, and memory. By analyzing the computational graphs of the Graph Convolutional Network (GCN) and Graph Attention (GAT) layers -- two widely used GNN layers -- we propose alternative computation strategies. We present adaptive operator reordering with caching, which achieves a speedup of up to 2.43x for GCN compared to the current state-of-the-art. Furthermore, an exploration of different caching schemes for GAT yields a speedup of up to 1.94x. The proposed optimizations save memory, are easily implemented across various hardware platforms, and have the potential to alleviate performance bottlenecks in training large-scale GNN models.

cs.LG↗

arXiv2023

Omni-Line-of-Sight Imaging for Holistic Shape Reconstruction

We introduce Omni-LOS, a neural computational imaging method for conducting holistic shape reconstruction (HSR) of complex objects utilizing a Single-Photon Avalanche Diode (SPAD)-based time-of-flight sensor. As illustrated in Fig. 1, our method enables new capabilities to reconstruct near-$360^\circ$ surrounding geometry of an object from a single scan spot. In such a scenario, traditional line-of-sight (LOS) imaging methods only see the front part of the object and typically fail to recover the occluded back regions. Inspired by recent advances of non-line-of-sight (NLOS) imaging techniques which have demonstrated great power to reconstruct occluded objects, Omni-LOS marries LOS and NLOS together, leveraging their complementary advantages to jointly recover the holistic shape of the object from a single scan position. The core of our method is to put the object nearby diffuse walls and augment the LOS scan in the front view with the NLOS scans from the surrounding walls, which serve as virtual ``mirrors'' to trap lights toward the object. Instead of separately recovering the LOS and NLOS signals, we adopt an implicit neural network to represent the object, analogous to NeRF and NeTF. While transients are measured along straight rays in LOS but over the spherical wavefronts in NLOS, we derive differentiable ray propagation models to simultaneously model both types of transient measurements so that the NLOS reconstruction also takes into account the direct LOS measurements and vice versa. We further develop a proof-of-concept Omni-LOS hardware prototype for real-world validation. Comprehensive experiments on various wall settings demonstrate that Omni-LOS successfully resolves shape ambiguities caused by occlusions, achieves high-fidelity 3D scan quality, and manages to recover objects of various scales and complexity.

cs.CV↗

arXiv2023

Datacenter Ethernet and RDMA: Issues at Hyperscale

We observe that emerging artificial intelligence, high-performance computing, and storage workloads pose new challenges for large-scale datacenter networking. RDMA over Converged Ethernet (RoCE) was an attempt to adopt modern Remote Direct Memory Access (RDMA) features into existing Ethernet installations. Now, a decade later, we revisit RoCE's design points and conclude that several of its shortcomings must be addressed to fulfill the demands of hyperscale datacenters. We predict that both the datacenter and high-performance computing markets will converge and adopt modernized Ethernet-based high-performance networking solutions that will replace TCP and RoCE within a decade.

cs.NI↗

arXiv2023

High-resolution tomographic reconstruction of optical absorbance through scattering media using neural fields

Light scattering imposes a major obstacle for imaging objects seated deeply in turbid media, such as biological tissues and foggy air. Diffuse optical tomography (DOT) tackles scattering by volumetrically recovering the optical absorbance and has shown significance in medical imaging, remote sensing and autonomous driving. A conventional DOT reconstruction paradigm necessitates discretizing the object volume into voxels at a pre-determined resolution for modelling diffuse light propagation and the resulting spatial resolution of the reconstruction is generally limited. We propose NeuDOT, a novel DOT scheme based on neural fields (NF) to continuously encode the optical absorbance within the volume and subsequently bridge the gap between model accuracy and high resolution. Comprehensive experiments demonstrate that NeuDOT achieves submillimetre lateral resolution and resolves complex 3D objects at 14 mm-depth, outperforming the state-of-the-art methods. NeuDOT is a non-invasive, high-resolution and computationally efficient tomographic method, and unlocks further applications of NF involving light scattering.

physics.optics↗

arXiv2023

Mingling or Misalignment? Temporal Shift for Speech Emotion Recognition with Pre-trained Representations

Fueled by recent advances of self-supervised models, pre-trained speech representations proved effective for the downstream speech emotion recognition (SER) task. Most prior works mainly focus on exploiting pre-trained representations and just adopt a linear head on top of the pre-trained model, neglecting the design of the downstream network. In this paper, we propose a temporal shift module to mingle channel-wise information without introducing any parameter or FLOP. With the temporal shift module, three designed baseline building blocks evolve into corresponding shift variants, i.e. ShiftCNN, ShiftLSTM, and Shiftformer. Moreover, to balance the trade-off between mingling and misalignment, we propose two technical strategies, placement of shift and proportion of shift. The family of temporal shift models all outperforms the state-of-the-art methods on the benchmark IEMOCAP dataset under both finetuning and feature extraction settings. Our code is available at https://github.com/ECNU-Cross-Innovation-Lab/ShiftSER.

cs.SD↗

arXiv2022

PhoCaL: A Multi-Modal Dataset for Category-Level Object Pose Estimation with Photometrically Challenging Objects

Object pose estimation is crucial for robotic applications and augmented reality. Beyond instance level 6D object pose estimation methods, estimating category-level pose and shape has become a promising trend. As such, a new research field needs to be supported by well-designed datasets. To provide a benchmark with high-quality ground truth annotations to the community, we introduce a multimodal dataset for category-level object pose estimation with photometrically challenging objects termed PhoCaL. PhoCaL comprises 60 high quality 3D models of household objects over 8 categories including highly reflective, transparent and symmetric objects. We developed a novel robot-supported multi-modal (RGB, depth, polarisation) data acquisition and annotation process. It ensures sub-millimeter accuracy of the pose for opaque textured, shiny and transparent objects, no motion blur and perfect camera synchronisation. To set a benchmark for our dataset, state-of-the-art RGB-D and monocular RGB methods are evaluated on the challenging scenes of PhoCaL.

cs.CV↗

arXiv2021

Onsite Non-Line-of-Sight Imaging via Online Calibrations

There has been an increasing interest in deploying non-line-of-sight (NLOS) imaging systems for recovering objects behind an obstacle. Existing solutions generally pre-calibrate the system before scanning the hidden objects. Onsite adjustments of the occluder, object and scanning pattern require re-calibration. We present an online calibration technique that directly decouples the acquired transients at onsite scanning into the LOS and hidden components. We use the former to directly (re)calibrate the system upon changes of scene/obstacle configurations, scanning regions, and scanning patterns whereas the latter for hidden object recovery via spatial, frequency or learning based techniques. Our technique avoids using auxiliary calibration apparatus such as mirrors or checkerboards and supports both laboratory validations and real-world deployments.

eess.IV↗

arXiv2021

LMR-CBT: Learning Modality-fused Representations with CB-Transformer for Multimodal Emotion Recognition from Unaligned Multimodal Sequences

Learning modality-fused representations and processing unaligned multimodal sequences are meaningful and challenging in multimodal emotion recognition. Existing approaches use directional pairwise attention or a message hub to fuse language, visual, and audio modalities. However, those approaches introduce information redundancy when fusing features and are inefficient without considering the complementarity of modalities. In this paper, we propose an efficient neural network to learn modality-fused representations with CB-Transformer (LMR-CBT) for multimodal emotion recognition from unaligned multimodal sequences. Specifically, we first perform feature extraction for the three modalities respectively to obtain the local structure of the sequences. Then, we design a novel transformer with cross-modal blocks (CB-Transformer) that enables complementary learning of different modalities, mainly divided into local temporal learning,cross-modal feature fusion and global self-attention representations. In addition, we splice the fused features with the original features to classify the emotions of the sequences. Finally, we conduct word-aligned and unaligned experiments on three challenging datasets, IEMOCAP, CMU-MOSI, and CMU-MOSEI. The experimental results show the superiority and efficiency of our proposed method in both settings. Compared with the mainstream methods, our approach reaches the state-of-the-art with a minimum number of parameters.

cs.CV↗

arXiv2021

Non-line-of-Sight Imaging via Neural Transient Fields

We present a neural modeling framework for Non-Line-of-Sight (NLOS) imaging. Previous solutions have sought to explicitly recover the 3D geometry (e.g., as point clouds) or voxel density (e.g., within a pre-defined volume) of the hidden scene. In contrast, inspired by the recent Neural Radiance Field (NeRF) approach, we use a multi-layer perceptron (MLP) to represent the neural transient field or NeTF. However, NeTF measures the transient over spherical wavefronts rather than the radiance along lines. We therefore formulate a spherical volume NeTF reconstruction pipeline, applicable to both confocal and non-confocal setups. Compared with NeRF, NeTF samples a much sparser set of viewpoints (scanning spots) and the sampling is highly uneven. We thus introduce a Monte Carlo technique to improve the robustness in the reconstruction. Comprehensive experiments on synthetic and real datasets demonstrate NeTF provides higher quality reconstruction and preserves fine details largely missing in the state-of-the-art.

eess.IV↗

arXiv2021

High-order Differentiable Autoencoder for Nonlinear Model Reduction

This paper provides a new avenue for exploiting deep neural networks to improve physics-based simulation. Specifically, we integrate the classic Lagrangian mechanics with a deep autoencoder to accelerate elastic simulation of deformable solids. Due to the inertia effect, the dynamic equilibrium cannot be established without evaluating the second-order derivatives of the deep autoencoder network. This is beyond the capability of off-the-shelf automatic differentiation packages and algorithms, which mainly focus on the gradient evaluation. Solving the nonlinear force equilibrium is even more challenging if the standard Newton's method is to be used. This is because we need to compute a third-order derivative of the network to obtain the variational Hessian. We attack those difficulties by exploiting complex-step finite difference, coupled with reverse automatic differentiation. This strategy allows us to enjoy the convenience and accuracy of complex-step finite difference and in the meantime, to deploy complex-value perturbations as collectively as possible to save excessive network passes. With a GPU-based implementation, we are able to wield deep autoencoders (e.g., $10+$ layers) with a relatively high-dimension latent space in real-time. Along this pipeline, we also design a sampling network and a weighting network to enable \emph{weight-varying} Cubature integration in order to incorporate nonlinearity in the model reduction. We believe this work will inspire and benefit future research efforts in nonlinearly reduced physical simulation problems.

cs.LG↗

arXiv2020

Second-order Neural Network Training Using Complex-step Directional Derivative

While the superior performance of second-order optimization methods such as Newton's method is well known, they are hardly used in practice for deep learning because neither assembling the Hessian matrix nor calculating its inverse is feasible for large-scale problems. Existing second-order methods resort to various diagonal or low-rank approximations of the Hessian, which often fail to capture necessary curvature information to generate a substantial improvement. On the other hand, when training becomes batch-based (i.e., stochastic), noisy second-order information easily contaminates the training procedure unless expensive safeguard is employed. In this paper, we adopt a numerical algorithm for second-order neural network training. We tackle the practical obstacle of Hessian calculation by using the complex-step finite difference (CSFD) -- a numerical procedure adding an imaginary perturbation to the function for derivative computation. CSFD is highly robust, efficient, and accurate (as accurate as the analytic result). This method allows us to literally apply any known second-order optimization methods for deep learning training. Based on it, we design an effective Newton Krylov procedure. The key mechanism is to terminate the stochastic Krylov iteration as soon as a disturbing direction is found so that unnecessary computation can be avoided. During the optimization, we monitor the approximation error in the Taylor expansion to adjust the step size. This strategy combines advantages of line search and trust region methods making our method preserves good local and global convergency at the same time. We have tested our methods in various deep learning tasks. The experiments show that our method outperforms exiting methods, and it often converges one-order faster. We believe our method will inspire a wide-range of new algorithms for deep learning and numerical optimization.

cs.LG↗