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Sneha Arora

Publications and source records attributed to Sneha Arora.

3 recordsLinked to original sources

Core-excited and shape-type resonances in the micro-solvated Uracil: A CASSCF study

Electronic resonances play an important role in electron attachment-induced processes in biomolecules, and their properties can be significantly influenced by the local molecular environment. Here, we investigate the effect of amino acid micro-solvation on the uracil resonances by employing uracil-glycine as a model system. The resonance spectrum of the uracil-glycine complex consists of four {\pi}-type shape resonances and three core-excited resonances, including an additional glycine-centered resonance, as characterized using the CASSCF/Resonance via Pad\'e (RVP) methodology. Comparison with isolated uracil and the uracil(ghostGly) model shows that explicit interaction with glycine stabilizes both the shape and core-excited resonances by lowering their energies and increasing their lifetimes, while the ghost calculations demonstrate that basis-set extension alone cannot account for the observed stabilization. The core-excited resonances exhibit states that retain non-negligible lifetimes despite their much higher energy, suggesting that they may play an important role in electron-induced dissociation pathways. Overall, the present results demonstrate that amino acid micro-solvation significantly modifies the resonance landscape of uracil, highlighting the importance of explicitly accounting for local biomolecular interactions in theoretical studies of electron attachment.

physics.chem-ph

Electron Attachment Induced Shape Resonances in AT Base Pairs

In this work, we investigated the influence of base pairing and {\pi}-{\pi} stacking interactions on electron attachment induced shape resonances in the adenine-thymine (AT) base pair. Resonance positions and widths are computed using a DLPNO based equation of motion coupled-cluster approach in conjunction with the Pad\'e analytical continuation method. Seven {\pi}* shape resonances are identified for both linear and stacked AT geometries, consistent with the total number of resonances in isolated adenine and thymine. Natural orbital analysis reveals that low-energy resonances exhibit significant electron density delocalization over both nucleobases. This delocalization is enhanced in the stacked geometry, leading to appreciable stabilization and increased lifetimes of the resonance states. These results highlight the important role of intermolecular interactions in modulating electron attachment processes in DNA.

physics.chem-ph

Effect of Protein Environment on the Shape Resonances of RNA Nucleobases: Insights From a Model System

In this work, the effect of amino acid environment on the nucleobase-centered anion radical shape resonances is investigated by employing uracil as a model system for pyrimidine base in RNA. Anionic uracil-glycine complexes have been used to model the RNA-protein interactions. The resonance positions and widths of these complexes have been simulated using the equation of motion coupled cluster method coupled with resonance via Pad\'e approach. Our work shows that in the transient negative ion (TNI, or, the anion radical of glycine:uracil complex), glycine stabilizes the nucleobase-centered resonances through hydrogen bonding, increasing the lifetime of TNI. At the same time, a glycine-centered resonance shows the ability of amino acids to capture the electron density and move it away from the uracil nucleobase. At the micro-solvation level, this modeling indicates that amino acids would have more influence on nucleobase-centered resonances in the TNI than that displayed by the corresponding aqueous environment.

physics.chem-ph