arXiv subjects

Somali Chaterji

Publications and source records attributed to Somali Chaterji.

21 records · Page 2Linked to original sources

arXiv2020

Artificial Intelligence for Digital Agriculture at Scale: Techniques, Policies, and Challenges

Digital agriculture has the promise to transform agricultural throughput. It can do this by applying data science and engineering for mapping input factors to crop throughput, while bounding the available resources. In addition, as the data volumes and varieties increase with the increase in sensor deployment in agricultural fields, data engineering techniques will also be instrumental in collection of distributed data as well as distributed processing of the data. These have to be done such that the latency requirements of the end users and applications are satisfied. Understanding how farm technology and big data can improve farm productivity can significantly increase the world's food production by 2050 in the face of constrained arable land and with the water levels receding. While much has been written about digital agriculture's potential, little is known about the economic costs and benefits of these emergent systems. In particular, the on-farm decision making processes, both in terms of adoption and optimal implementation, have not been adequately addressed. For example, if some algorithm needs data from multiple data owners to be pooled together, that raises the question of data ownership. This paper is the first one to bring together the important questions that will guide the end-to-end pipeline for the evolution of a new generation of digital agricultural solutions, driving the next revolution in agriculture and sustainability under one umbrella.

cs.CY↗

arXiv2019

Resilient Cyberphysical Systems and their Application Drivers: A Technology Roadmap

Cyberphysical systems (CPS) are ubiquitous in our personal and professional lives, and they promise to dramatically improve micro-communities (e.g., urban farms, hospitals), macro-communities (e.g., cities and metropolises), urban structures (e.g., smart homes and cars), and living structures (e.g., human bodies, synthetic genomes). The question that we address in this article pertains to designing these CPS systems to be resilient-from-the-ground-up, and through progressive learning, resilient-by-reaction. An optimally designed system is resilient to both unique attacks and recurrent attacks, the latter with a lower overhead. Overall, the notion of resilience can be thought of in the light of three main sources of lack of resilience, as follows: exogenous factors, such as natural variations and attack scenarios; mismatch between engineered designs and exogenous factors ranging from DDoS (distributed denial-of-service) attacks or other cybersecurity nightmares, so called "black swan" events, disabling critical services of the municipal electrical grids and other connected infrastructures, data breaches, and network failures; and the fragility of engineered designs themselves encompassing bugs, human-computer interactions (HCI), and the overall complexity of real-world systems. In the paper, our focus is on design and deployment innovations that are broadly applicable across a range of CPS application areas.

cs.CY↗

arXiv2018

ATHENA: Automated Tuning of Genomic Error Correction Algorithms using Language Models

The performance of most error-correction algorithms that operate on genomic sequencer reads is dependent on the proper choice of its configuration parameters, such as the value of k in k-mer based techniques. In this work, we target the problem of finding the best values of these configuration parameters to optimize error correction. We perform this in a data-driven manner, due to the observation that different configuration parameters are optimal for different datasets, i.e., from different instruments and organisms. We use language modeling techniques from the Natural Language Processing (NLP) domain in our algorithmic suite, Athena, to automatically tune the performance-sensitive configuration parameters. Through the use of N-Gram and Recurrent Neural Network (RNN) language modeling, we validate the intuition that the EC performance can be computed quantitatively and efficiently using the perplexity metric, prevalent in NLP. After training the language model, we show that the perplexity metric calculated for runtime data has a strong negative correlation with the correction of the erroneous NGS reads. Therefore, we use the perplexity metric to guide a hill climbing-based search, converging toward the best $k$-value. Our approach is suitable for both de novo and comparative sequencing (resequencing), eliminating the need for a reference genome to serve as the ground truth. This is important because the use of a reference genome often carries forward the biases along the stages of the pipeline.

cs.NE↗