arXiv subjects

Sonali Agarwal

Publications and source records attributed to Sonali Agarwal.

At least 37 records · Page 2Linked to original sources

arXiv2023

Semantic rule Web-based Diagnosis and Treatment of Vector-Borne Diseases using SWRL rules

Vector-borne diseases (VBDs) are a kind of infection caused through the transmission of vectors generated by the bites of infected parasites, bacteria, and viruses, such as ticks, mosquitoes, triatomine bugs, blackflies, and sandflies. If these diseases are not properly treated within a reasonable time frame, the mortality rate may rise. In this work, we propose a set of ontologies that will help in the diagnosis and treatment of vector-borne diseases. For developing VBD's ontology, electronic health records taken from the Indian Health Records website, text data generated from Indian government medical mobile applications, and doctors' prescribed handwritten notes of patients are used as input. This data is then converted into correct text using Optical Character Recognition (OCR) and a spelling checker after pre-processing. Natural Language Processing (NLP) is applied for entity extraction from text data for making Resource Description Framework (RDF) medical data with the help of the Patient Clinical Data (PCD) ontology. Afterwards, Basic Formal Ontology (BFO), National Vector Borne Disease Control Program (NVBDCP) guidelines, and RDF medical data are used to develop ontologies for VBDs, and Semantic Web Rule Language (SWRL) rules are applied for diagnosis and treatment. The developed ontology helps in the construction of decision support systems (DSS) for the NVBDCP to control these diseases.

cs.AI↗

arXiv2022

Semantic Sensor Network Ontology based Decision Support System for Forest Fire Management

The forests are significant assets for every country. When it gets destroyed, it may negatively impact the environment, and forest fire is one of the primary causes. Fire weather indices are widely used to measure fire danger and are used to issue bushfire warnings. It can also be used to predict the demand for emergency management resources. Sensor networks have grown in popularity in data collection and processing capabilities for a variety of applications in industries such as medical, environmental monitoring, home automation etc. Semantic sensor networks can collect various climatic circumstances like wind speed, temperature, and relative humidity. However, estimating fire weather indices is challenging due to the various issues involved in processing the data streams generated by the sensors. Hence, the importance of forest fire detection has increased day by day. The underlying Semantic Sensor Network (SSN) ontologies are built to allow developers to create rules for calculating fire weather indices and also the convert dataset into Resource Description Framework (RDF). This research describes the various steps involved in developing rules for calculating fire weather indices. Besides, this work presents a Web-based mapping interface to help users visualize the changes in fire weather indices over time. With the help of the inference rule, it designed a decision support system using the SSN ontology and query on it through SPARQL. The proposed fire management system acts according to the situation, supports reasoning and the general semantics of the open-world followed by all the ontologies

cs.AI↗

arXiv2022

Impact of the composition of feature extraction and class sampling in medicare fraud detection

With healthcare being critical aspect, health insurance has become an important scheme in minimizing medical expenses. Following this, the healthcare industry has seen a significant increase in fraudulent activities owing to increased insurance, and fraud has become a significant contributor to rising medical care expenses, although its impact can be mitigated using fraud detection techniques. To detect fraud, machine learning techniques are used. The Centers for Medicaid and Medicare Services (CMS) of the United States federal government released "Medicare Part D" insurance claims is utilized in this study to develop fraud detection system. Employing machine learning algorithms on a class-imbalanced and high dimensional medicare dataset is a challenging task. To compact such challenges, the present work aims to perform feature extraction following data sampling, afterward applying various classification algorithms, to get better performance. Feature extraction is a dimensionality reduction approach that converts attributes into linear or non-linear combinations of the actual attributes, generating a smaller and more diversified set of attributes and thus reducing the dimensions. Data sampling is commonlya used to address the class imbalance either by expanding the frequency of minority class or reducing the frequency of majority class to obtain approximately equal numbers of occurrences for both classes. The proposed approach is evaluated through standard performance metrics. Thus, to detect fraud efficiently, this study applies autoencoder as a feature extraction technique, synthetic minority oversampling technique (SMOTE) as a data sampling technique, and various gradient boosted decision tree-based classifiers as a classification algorithm. The experimental results show the combination of autoencoders followed by SMOTE on the LightGBM classifier achieved best results.

cs.LG↗

arXiv2022

Anomaly detection in surveillance videos using transformer based attention model

Surveillance footage can catch a wide range of realistic anomalies. This research suggests using a weakly supervised strategy to avoid annotating anomalous segments in training videos, which is time consuming. In this approach only video level labels are used to obtain frame level anomaly scores. Weakly supervised video anomaly detection (WSVAD) suffers from the wrong identification of abnormal and normal instances during the training process. Therefore it is important to extract better quality features from the available videos. WIth this motivation, the present paper uses better quality transformer-based features named Videoswin Features followed by the attention layer based on dilated convolution and self attention to capture long and short range dependencies in temporal domain. This gives us a better understanding of available videos. The proposed framework is validated on real-world dataset i.e. ShanghaiTech Campus dataset which results in competitive performance than current state-of-the-art methods. The model and the code are available at https://github.com/kapildeshpande/Anomaly-Detection-in-Surveillance-Videos

cs.CV↗

arXiv2022

Empirical Analysis of Lifelog Data using Optimal Feature Selection based Unsupervised Logistic Regression (OFS-ULR) Model with Spark Streaming

Recent advancement in the field of pervasive healthcare monitoring systems causes the generation of a huge amount of lifelog data in real-time. Chronic diseases are one of the most serious health challenges in developing and developed countries. According to WHO, this accounts for 73% of all deaths and 60% of the global burden of diseases. Chronic disease classification models are now harnessing the potential of lifelog data to explore better healthcare practices. This paper is to construct an optimal feature selection-based unsupervised logistic regression model (OFS-ULR) to classify chronic diseases. Since lifelog data analysis is crucial due to its sensitive nature; thus the conventional classification models show limited performance. Therefore, designing new classifiers for the classification of chronic diseases using lifelog data is the need of the age. The vital part of building a good model depends on pre-processing of the dataset, identifying important features, and then training a learning algorithm with suitable hyper parameters for better performance. The proposed approach improves the performance of existing methods using a series of steps such as (i) removing redundant or invalid instances, (ii) making the data labelled using clustering and partitioning the data into classes, (iii) identifying the suitable subset of features by applying either some domain knowledge or selection algorithm, (iv) hyper parameter tuning for models to get best results, and (v) performance evaluation using Spark streaming environment. For this purpose, two-time series datasets are used in the experiment to compute the accuracy, recall, precision, and f1-score. The experimental analysis proves the suitability of the proposed approach as compared to the conventional classifiers and our newly constructed model achieved highest accuracy and reduced training complexity among all among all.

cs.LG↗

arXiv2022

An optimized hybrid solution for IoT based lifestyle disease classification using stress data

Stress, anxiety, and nervousness are all high-risk health states in everyday life. Previously, stress levels were determined by speaking with people and gaining insight into what they had experienced recently or in the past. Typically, stress is caused by an incidence that occurred a long time ago, but sometimes it is triggered by unknown factors. This is a challenging and complex task, but recent research advances have provided numerous opportunities to automate it. The fundamental features of most of these techniques are electro dermal activity (EDA) and heart rate values (HRV). We utilized an accelerometer to measure body motions to solve this challenge. The proposed novel method employs a test that measures a subject's electrocardiogram (ECG), galvanic skin values (GSV), HRV values, and body movements in order to provide a low-cost and time-saving solution for detecting stress lifestyle disease in modern times using cyber physical systems. This study provides a new hybrid model for lifestyle disease classification that decreases execution time while picking the best collection of characteristics and increases classification accuracy. The developed approach is capable of dealing with the class imbalance problem by using WESAD (wearable stress and affect dataset) dataset. The new model uses the Grid search (GS) method to select an optimized set of hyper parameters, and it uses a combination of the Correlation coefficient based Recursive feature elimination (CoC-RFE) method for optimal feature selection and gradient boosting as an estimator to classify the dataset, which achieves high accuracy and helps to provide smart, accurate, and high-quality healthcare systems. To demonstrate the validity and utility of the proposed methodology, its performance is compared to those of other well-established machine learning models.

eess.SP↗

arXiv2022

BT-Unet: A self-supervised learning framework for biomedical image segmentation using Barlow Twins with U-Net models

Deep learning has brought the most profound contribution towards biomedical image segmentation to automate the process of delineation in medical imaging. To accomplish such task, the models are required to be trained using huge amount of annotated or labelled data that highlights the region of interest with a binary mask. However, efficient generation of the annotations for such huge data requires expert biomedical analysts and extensive manual effort. It is a tedious and expensive task, while also being vulnerable to human error. To address this problem, a self-supervised learning framework, BT-Unet is proposed that uses the Barlow Twins approach to pre-train the encoder of a U-Net model via redundancy reduction in an unsupervised manner to learn data representation. Later, complete network is fine-tuned to perform actual segmentation. The BT-Unet framework can be trained with a limited number of annotated samples while having high number of unannotated samples, which is mostly the case in real-world problems. This framework is validated over multiple U-Net models over diverse datasets by generating scenarios of a limited number of labelled samples using standard evaluation metrics. With exhaustive experiment trials, it is observed that the BT-Unet framework enhances the performance of the U-Net models with significant margin under such circumstances.

eess.IV↗

arXiv2022

Modality specific U-Net variants for biomedical image segmentation: A survey

With the advent of advancements in deep learning approaches, such as deep convolution neural network, residual neural network, adversarial network; U-Net architectures are most widely utilized in biomedical image segmentation to address the automation in identification and detection of the target regions or sub-regions. In recent studies, U-Net based approaches have illustrated state-of-the-art performance in different applications for the development of computer-aided diagnosis systems for early diagnosis and treatment of diseases such as brain tumor, lung cancer, alzheimer, breast cancer, etc., using various modalities. This article contributes in presenting the success of these approaches by describing the U-Net framework, followed by the comprehensive analysis of the U-Net variants by performing 1) inter-modality, and 2) intra-modality categorization to establish better insights into the associated challenges and solutions. Besides, this article also highlights the contribution of U-Net based frameworks in the ongoing pandemic, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) also known as COVID-19. Finally, the strengths and similarities of these U-Net variants are analysed along with the challenges involved in biomedical image segmentation to uncover promising future research directions in this area.

eess.IV↗

arXiv2022

RCA-IUnet: A residual cross-spatial attention guided inception U-Net model for tumor segmentation in breast ultrasound imaging

The advancements in deep learning technologies have produced immense contributions to biomedical image analysis applications. With breast cancer being the common deadliest disease among women, early detection is the key means to improve survivability. Medical imaging like ultrasound presents an excellent visual representation of the functioning of the organs; however, for any radiologist analysing such scans is challenging and time consuming which delays the diagnosis process. Although various deep learning based approaches are proposed that achieved promising results, the present article introduces an efficient residual cross-spatial attention guided inception U-Net (RCA-IUnet) model with minimal training parameters for tumor segmentation using breast ultrasound imaging to further improve the segmentation performance of varying tumor sizes. The RCA-IUnet model follows U-Net topology with residual inception depth-wise separable convolution and hybrid pooling (max pooling and spectral pooling) layers. In addition, cross-spatial attention filters are added to suppress the irrelevant features and focus on the target structure. The segmentation performance of the proposed model is validated on two publicly available datasets using standard segmentation evaluation metrics, where it outperformed the other state-of-the-art segmentation models.

eess.IV↗

arXiv2021

CHS-Net: A Deep learning approach for hierarchical segmentation of COVID-19 infected CT images

The pandemic of novel SARS-CoV-2 also known as COVID-19 has been spreading worldwide, causing rampant loss of lives. Medical imaging such as CT, X-ray, etc., plays a significant role in diagnosing the patients by presenting the visual representation of the functioning of the organs. However, for any radiologist analyzing such scans is a tedious and time-consuming task. The emerging deep learning technologies have displayed its strength in analyzing such scans to aid in the faster diagnosis of the diseases and viruses such as COVID-19. In the present article, an automated deep learning based model, COVID-19 hierarchical segmentation network (CHS-Net) is proposed that functions as a semantic hierarchical segmenter to identify the COVID-19 infected regions from lungs contour via CT medical imaging using two cascaded residual attention inception U-Net (RAIU-Net) models. RAIU-Net comprises of a residual inception U-Net model with spectral spatial and depth attention network (SSD) that is developed with the contraction and expansion phases of depthwise separable convolutions and hybrid pooling (max and spectral pooling) to efficiently encode and decode the semantic and varying resolution information. The CHS-Net is trained with the segmentation loss function that is the defined as the average of binary cross entropy loss and dice loss to penalize false negative and false positive predictions. The approach is compared with the recently proposed approaches and evaluated using the standard metrics like accuracy, precision, specificity, recall, dice coefficient and Jaccard similarity along with the visualized interpretation of the model prediction with GradCam++ and uncertainty maps. With extensive trials, it is observed that the proposed approach outperformed the recently proposed approaches and effectively segments the COVID-19 infected regions in the lungs.

eess.IV↗

arXiv2021

MAG-Net: Multi-task attention guided network for brain tumor segmentation and classification

Brain tumor is the most common and deadliest disease that can be found in all age groups. Generally, MRI modality is adopted for identifying and diagnosing tumors by the radiologists. The correct identification of tumor regions and its type can aid to diagnose tumors with the followup treatment plans. However, for any radiologist analysing such scans is a complex and time-consuming task. Motivated by the deep learning based computer-aided-diagnosis systems, this paper proposes multi-task attention guided encoder-decoder network (MAG-Net) to classify and segment the brain tumor regions using MRI images. The MAG-Net is trained and evaluated on the Figshare dataset that includes coronal, axial, and sagittal views with 3 types of tumors meningioma, glioma, and pituitary tumor. With exhaustive experimental trials the model achieved promising results as compared to existing state-of-the-art models, while having least number of training parameters among other state-of-the-art models.

eess.IV↗

arXiv2021

White blood cell subtype detection and classification

Machine learning has endless applications in the health care industry. White blood cell classification is one of the interesting and promising area of research. The classification of the white blood cells plays an important part in the medical diagnosis. In practise white blood cell classification is performed by the haematologist by taking a small smear of blood and careful examination under the microscope. The current procedures to identify the white blood cell subtype is more time taking and error-prone. The computer aided detection and diagnosis of the white blood cells tend to avoid the human error and reduce the time taken to classify the white blood cells. In the recent years several deep learning approaches have been developed in the context of classification of the white blood cells that are able to identify but are unable to localize the positions of white blood cells in the blood cell image. Following this, the present research proposes to utilize YOLOv3 object detection technique to localize and classify the white blood cells with bounding boxes. With exhaustive experimental analysis, the proposed work is found to detect the white blood cell with 99.2% accuracy and classify with 90% accuracy.

cs.CV↗

arXiv2021

Impact of Attention on Adversarial Robustness of Image Classification Models

Adversarial attacks against deep learning models have gained significant attention and recent works have proposed explanations for the existence of adversarial examples and techniques to defend the models against these attacks. Attention in computer vision has been used to incorporate focused learning of important features and has led to improved accuracy. Recently, models with attention mechanisms have been proposed to enhance adversarial robustness. Following this context, this work aims at a general understanding of the impact of attention on adversarial robustness. This work presents a comparative study of adversarial robustness of non-attention and attention based image classification models trained on CIFAR-10, CIFAR-100 and Fashion MNIST datasets under the popular white box and black box attacks. The experimental results show that the robustness of attention based models may be dependent on the datasets used i.e. the number of classes involved in the classification. In contrast to the datasets with less number of classes, attention based models are observed to show better robustness towards classification.

cs.CV↗

arXiv2021

Recommending best course of treatment based on similarities of prognostic markers

With the advancement in the technology sector spanning over every field, a huge influx of information is inevitable. Among all the opportunities that the advancements in the technology have brought, one of them is to propose efficient solutions for data retrieval. This means that from an enormous pile of data, the retrieval methods should allow the users to fetch the relevant and recent data over time. In the field of entertainment and e-commerce, recommender systems have been functioning to provide the aforementioned. Employing the same systems in the medical domain could definitely prove to be useful in variety of ways. Following this context, the goal of this paper is to propose collaborative filtering based recommender system in the healthcare sector to recommend remedies based on the symptoms experienced by the patients. Furthermore, a new dataset is developed consisting of remedies concerning various diseases to address the limited availability of the data. The proposed recommender system accepts the prognostic markers of a patient as the input and generates the best remedy course. With several experimental trials, the proposed model achieved promising results in recommending the possible remedy for given prognostic markers.

cs.IR↗

arXiv2021

Machine learning equipped web based disease prediction and recommender system

Worldwide, several cases go undiagnosed due to poor healthcare support in remote areas. In this context, a centralized system is needed for effective monitoring and analysis of the medical records. A web-based patient diagnostic system is a central platform to store the medical history and predict the possible disease based on the current symptoms experienced by a patient to ensure faster and accurate diagnosis. Early disease prediction can help the users determine the severity of the disease and take quick action. The proposed web-based disease prediction system utilizes machine learning based classification techniques on a data set acquired from the National Centre of Disease Control (NCDC). $K$-nearest neighbor (K-NN), random forest and naive bayes classification approaches are utilized and an ensemble voting algorithm is also proposed where each classifier is assigned weights dynamically based on the prediction confidence. The proposed system is also equipped with a recommendation scheme to recommend the type of tests based on the existing symptoms of the patient, so that necessary precautions can be taken. A centralized database ensures that the medical data is preserved and there is transparency in the system. The tampering into the system is prevented by giving the no "updation" rights once the diagnosis is created.

cs.CV↗

arXiv2021

BERT-Based Sentiment Analysis: A Software Engineering Perspective

Sentiment analysis can provide a suitable lead for the tools used in software engineering along with the API recommendation systems and relevant libraries to be used. In this context, the existing tools like SentiCR, SentiStrength-SE, etc. exhibited low f1-scores that completely defeats the purpose of deployment of such strategies, thereby there is enough scope for performance improvement. Recent advancements show that transformer based pre-trained models (e.g., BERT, RoBERTa, ALBERT, etc.) have displayed better results in the text classification task. Following this context, the present research explores different BERT-based models to analyze the sentences in GitHub comments, Jira comments, and Stack Overflow posts. The paper presents three different strategies to analyse BERT based model for sentiment analysis, where in the first strategy the BERT based pre-trained models are fine-tuned; in the second strategy an ensemble model is developed from BERT variants, and in the third strategy a compressed model (Distil BERT) is used. The experimental results show that the BERT based ensemble approach and the compressed BERT model attain improvements by 6-12% over prevailing tools for the F1 measure on all three datasets.

cs.CV↗

arXiv2021

Hate speech detection using static BERT embeddings

With increasing popularity of social media platforms hate speech is emerging as a major concern, where it expresses abusive speech that targets specific group characteristics, such as gender, religion or ethnicity to spread violence. Earlier people use to verbally deliver hate speeches but now with the expansion of technology, some people are deliberately using social media platforms to spread hate by posting, sharing, commenting, etc. Whether it is Christchurch mosque shootings or hate crimes against Asians in west, it has been observed that the convicts are very much influenced from hate text present online. Even though AI systems are in place to flag such text but one of the key challenges is to reduce the false positive rate (marking non hate as hate), so that these systems can detect hate speech without undermining the freedom of expression. In this paper, we use ETHOS hate speech detection dataset and analyze the performance of hate speech detection classifier by replacing or integrating the word embeddings (fastText (FT), GloVe (GV) or FT + GV) with static BERT embeddings (BE). With the extensive experimental trails it is observed that the neural network performed better with static BE compared to using FT, GV or FT + GV as word embeddings. In comparison to fine-tuned BERT, one metric that significantly improved is specificity.

cs.CL↗

arXiv2021

Pinball-OCSVM for early-stage COVID-19 diagnosis with limited posteroanterior chest X-ray images

The infection of respiratory coronavirus disease 2019 (COVID-19) starts with the upper respiratory tract and as the virus grows, the infection can progress to lungs and develop pneumonia. The conventional way of COVID-19 diagnosis is reverse transcription polymerase chain reaction (RT-PCR), which is less sensitive during early stages; especially if the patient is asymptomatic, which may further cause more severe pneumonia. In this context, several deep learning models have been proposed to identify pulmonary infections using publicly available chest X-ray (CXR) image datasets for early diagnosis, better treatment and quick cure. In these datasets, presence of less number of COVID-19 positive samples compared to other classes (normal, pneumonia and Tuberculosis) raises the challenge for unbiased learning of deep learning models. All deep learning models opted class balancing techniques to solve this issue; which however should be avoided in any medical diagnosis process. Moreover, the deep learning models are also data hungry and need massive computation resources. Therefore for quicker diagnosis, this research proposes a novel pinball loss function based one-class support vector machine (PB-OCSVM), that can work in presence of limited COVID-19 positive CXR samples with objectives to maximize the learning efficiency and to minimize the false predictions. The performance of the proposed model is compared with conventional OCSVM and existing deep learning models, and the experimental results prove that the proposed model outperformed over state-of-the-art methods. To validate the robustness of the proposed model, experiments are also performed with noisy CXR images and UCI benchmark datasets.

eess.IV↗