arXiv subjects

Sooyong Chae

Publications and source records attributed to Sooyong Chae.

3 recordsLinked to original sources

arXiv2026

Gestational Stage Prediction from Cervical Tissue Analysis Using Imaging Mueller Polarimetry Data

Preterm birth is associated with premature cervical remodeling, yet current clinical assessments cannot detect the underlying microstructural changes in collagen organization. We apply imaging Mueller polarimetry to murine cervical tissue at three gestational stages (early, mid, late) and develop classification methods to predict gestational stage from polarimetric maps. Using Lu-Chipman decomposition, we extract orientation and azimuth local variability maps that capture collagen fiber alignment and disorder. We evaluate two approaches under 20-fold leave-one-out cross-validation: an analytical threshold classifier on mean azimuth local variability, and a lightweight CNN ensemble (approximately 76k parameters) operating on spatially resolved maps. The ensemble achieves 70..0% sample-level accuracy, outperforming the analytical baseline (55.0%), with strong performance on early (71.0%) and late (86.0%) gestation. Spatial prediction maps confirm that classification accuracy is highest in the stroma, where collagen remodeling is most prominent. These results demonstrate that Mueller polarimetry combined with deep learning models can detect gestational collagen remodeling noninvasively, offering a potential pathway toward objective cervical assessment for preterm birth risk.

physics.med-ph↗

arXiv2026

Intensity-based Segmentation of Tissue Images Using a U-Net with a Pretrained ResNet-34 Encoder: Application to Mueller Microscopy

Manual annotation of the images of thin tissue sections remains a time-consuming step in Mueller microscopy and limits its scalability. We present a novel automated approach using only the total intensity M11 element of the Mueller matrix as an input to a U-Net architecture with a pretrained ResNet-34 encoder. The network was trained to distinguish four classes in the images of murine uterine cervix sections: background, internal os, cervical tissue, and vaginal wall. With only 70 cervical tissue sections, the model achieved 89.71% pixel accuracy and 80.96% mean tissue Dice coefficient on the held-out test dataset. Transfer learning from ImageNet enables accurate segmentation despite limited size of training dataset typical of specialized biomedical imaging. This intensity-based framework requires minimal preprocessing and is readily extensible to other imaging modalities and tissue types, with publicly available graphical annotation tools for practical deployment.

eess.IV↗

arXiv2024

Machine Learning Model for Complete Reconstruction of Diagnostic Polarimetric Images from partial Mueller polarimetry data

The translation of imaging Mueller polarimetry to clinical practice is often hindered by large footprint and relatively slow acquisition speed of the existing instruments. Using polarization-sensitive camera as a detector may reduce instrument dimensions and allow data streaming at video rate. However, only the first three rows of a complete 4x4 Mueller matrix can be measured. To overcome this hurdle we developed a machine learning approach using sequential neural network algorithm for the reconstruction of missing elements of a Mueller matrix from the measured elements of the first three rows. The algorithm was trained and tested on the dataset of polarimetric images of various excised human tissues (uterine cervix, colon, skin, brain) acquired with two different imaging Mueller polarimeters operating in either reflection (wide-field imaging system) or transmission (microscope) configurations at different wavelengths of 550 nm and 385 nm, respectively. The reconstruction performance was evaluated using various error metrics, all of which confirmed low error values. The execution time of the trained neural network algorithm was about 300 microseconds for a single image pixel. It suggests that a machine learning approach with parallel processing of all image pixels combined with the partial Mueller polarimeter operating at video rate can effectively substitute for the complete Mueller polarimeter and produce accurate maps of depolarization, linear retardance and orientation of the optical axis of biological tissues, which can be used for medical diagnosis in clinical settings.

physics.optics↗