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Sora Shiratani

Publications and source records attributed to Sora Shiratani.

4 recordsLinked to original sources

Lifting the fog - a case for non-reversible "lifted" Markov chains

Phase transitions appear all over science, and are familiar from everyday life, as water boiling, sugar melting into caramel or as nematic molecules turning smectic in liquid-crystal displays. The dynamics of phase transitions can be extremely slow, as for example when fog in winter does not lift, that is when the coarsening takes much time from many tiny water droplets to fewer but larger rain drops that feel the pull of gravity. The dynamics of phase transitions is relevant also for the performance of computer algorithms. In the ubiquitous Metropolis Monte Carlo algorithm, the mixing dynamics towards equilibrium leads towards the solution of a sampling problem. It is governed by the same reversibility and detailed-balance principles as the overdamped physical dynamics of fog. For the phase-separated Lennard-Jones system, we describe here how the coarsening dynamics of non-reversible "lifted" variants of the Metropolis algorithm proceeds on much faster time scales, with the microscopic non-reversibility translating into large-scale relative motion of droplets that is impossible under the Ostwald-ripening condition of reversibility. A density-displacement coupling moves droplets relative to each other through a lensing effect. Efficient implementations of the long-range Metropolis algorithm and its non-reversible lifting (event-chain Monte Carlo) allow us to show that, in consequence, the coarsening growth exponent is larger under lifting. For large system sizes, the computing problem is thus solved infinitely faster than before, with the outcome strictly unchanged with respect to the Metropolis algorithm. We also discuss the larger setting of our findings, namely that "lifted" non-reversible algorithms can be set up for generic reversible sampling methods, with applications going much beyond our example of lifting fog.

cond-mat.stat-mech

Stochastic parameter optimization analysis of dynamical quantum critical phenomena in long-range transverse-field Ising chain

The quantum phase transition of the one-dimensional long-range transverse-field Ising model is explored by combining the quantum Monte Carlo method and stochastic parameter optimization, specifically achieved by tuning correlation ratios so that space and imaginary time are isotropic. In our simulations, the simulator automatically determines the parameters to sample from, even without prior knowledge of the critical point and universality class. The leading-order finite-size corrections are eliminated by comparing two systems with different sizes; this procedure is also performed automatically. Varying the decay exponent of the long-range interaction, $σ$, we investigate $σ$-dependence of the dynamical exponent and the other critical exponents precisely in the mean-field, non-universal, and two-dimensional classical Ising universality regimes. We successfully obtained numerical evidence supporting $σ= 7/4$ as the universality boundary between the latter two.

cond-mat.stat-mech

Vortex reversal is a precursor of confined bacterial turbulence

Active turbulence, or chaotic self-organized collective motion, is often observed in concentrated suspensions of motile bacteria and other systems of self-propelled interacting agents. To date, there is no fundamental understanding of how geometrical confinement orchestrates active turbulence and alters its physical properties. Here, by combining large-scale experiments, computer modeling, and analytical theory, we have discovered a generic sequence of transitions occurring in bacterial suspensions confined in cylindrical wells of varying radii. With increasing the well's radius, we observed that persistent vortex motion gives way to periodic vortex reversals, four-vortex pulsations, and then well-developed active turbulence. Using computational modeling and analytical theory, we have shown that vortex reversal results from the nonlinear interaction of the first three azimuthal modes that become unstable with the radius increase. The analytical results account for our key experimental findings. To further validate our approach, we reconstructed equations of motion from experimental data. Our findings shed light on the universal properties of confined bacterial active matter and can be applied to various biological and synthetic active systems.

cond-mat.soft

Route to turbulence via oscillatory states in polar active fluid under confinement

We report a novel route to active turbulence, observed in numerical simulations of a polar active fluid model under confinement. To deal with large-scale computations with arbitrary geometries, we developed a GPU-based scheme that can be used for any boundary shape in a unified manner. For the circular confinement, as the radius was increased, we found a series of transitions first from a single stationary vortex to an oscillating pair of vortices, then through reentrant transitions between oscillatory and chaotic dynamics before finally reaching the active turbulence. The first transition turned out to be hysteretic, with the emergence of the oscillatory state consistent with the subcritical Hopf bifurcation. In dumbbell-shaped boundaries composed of two overlapping circles, we observed a transition comparable to the ferromagnetic-antiferromagnetic vortex-order transition reported in previous experiments, but the transition point turned out to show a qualitatively different geometry dependence.

cond-mat.stat-mech