arXiv subjects

Srirang Manohar

Publications and source records attributed to Srirang Manohar.

11 recordsLinked to original sources

arXiv2025

Artifacts in Photoacoustic Imaging: Origins and Mitigations

Photoacoustic imaging (PAI) is rapidly moving from the laboratory to the clinic, increasing the need to understand confounders which might adversely affect patient care. Over the past five years, landmark studies have shown the clinical utility of PAI, leading to regulatory approval of several devices. In this article, we describe the various causes of artifacts in PAI, providing schematic overviews and practical examples, simulated as well as experimental. This work serves two purposes: (1) educating clinical users to identify artifacts, understand their causes, and assess whether their impact, and (2) providing a reference of the limitations of current systems for those working to improve them. We explain how two aspects of PAI systems lead to artifacts: their inability to measure complete data sets, and embedded assumptions during reconstruction. We describe the physics underlying PAI, and propose a classification of the artifacts. The paper concludes by discussing possible advanced mitigation strategies.

physics.med-ph↗

arXiv2024

Super Phantoms: advanced models for testing medical imaging technologies

Phantoms are test objects used for initial testing and optimization of medical imaging techniques, but these rarely capture the complex properties of the tissue. Here we introduce super phantoms, that surpass standard phantoms being able to replicate complex anatomic and functional imaging properties of tissues and organs. These super phantoms can be computer models, inanimate physical objects, or ex-vivo organs. Testing on these super phantoms, will enable iterative improvements well before in-vivo studies, fostering innovation. We illustrate super phantom examples, address development challenges, and envision centralized facilities supporting multiple institutions in applying these models for medical advancements.

physics.med-ph↗

arXiv2023

An anthropomorphic thyroid phantom for ultrasound-guided radiofrequency ablation of nodules

Background: Needle-based procedures such as fine needle aspiration (FNA) and thermal ablation, are often applied for thyroid nodule diagnosis and therapeutic purposes, respectively. With blood vessels and nerves nearby, these procedures can pose risks in damaging surrounding critical structures. Purpose: The development and validation of innovative strategies to manage these risks require a test object with well-characterized physical properties. For this work, we focus on the application of ultrasound-guided thermal radio-frequency ablation (RFA). Methods: We have developed an anthropomorphic phantom mimicking the thyroid and surrounding anatomical and physiological structures that are relevant to ultrasound-guided thermal ablation. The phantom was composed of a mixture of polyacrylamide, water, and egg white extract and was cast using molds in multiple steps. The thermal, acoustical, and electrical characteristics were experimentally validated. The ablation zones were analyzed via non-destructive T2-weighted MRI scans utilizing the relaxometry changes of coagulated egg albumen, and the temperature distribution was monitored using an array of fiber Bragg sensors. Results: The physical properties of the phantom were verified both on ultrasound as well as its response to thermal ablation. The final temperature achieved (92°C), the median percentage of the nodule ablated (82.1%), the median volume ablated outside the nodule (0.8 mL), and the median number of critical structures affected (0) were quantified. Conclusion: An anthropomorphic phantom that can provide a realistic model for development and training in ultrasound-guided needle-based thermal interventions for thyroid nodules has been presented. In the future, this model can also be extended to novel needle-based diagnostic procedures.

physics.med-ph↗

arXiv2019

A Partially Learned Algorithm for Joint Photoacoustic Reconstruction and Segmentation

In an inhomogeneously illuminated photoacoustic image, important information like vascular geometry is not readily available when only the initial pressure is reconstructed. To obtain the desired information, algorithms for image segmentation are often applied as a post-processing step. In this work, we propose to jointly acquire the photoacoustic reconstruction and segmentation, by modifying a recently developed partially learned algorithm based on a convolutional neural network. We investigate the stability of the algorithm against changes in initial pressures and photoacoustic system settings. These insights are used to develop an algorithm that is robust to input and system settings. Our approach can easily be applied to other imaging modalities and can be modified to perform other high-level tasks different from segmentation. The method is validated on challenging synthetic and experimental photoacoustic tomography data in limited angle and limited view scenarios. It is computationally less expensive than classical iterative methods and enables higher quality reconstructions and segmentations than state-of-the-art learned and non-learned methods.

eess.IV↗

arXiv2017

A Framework for Directional and Higher-Order Reconstruction in Photoacoustic Tomography

Photoacoustic tomography is a hybrid imaging technique that combines high optical tissue contrast with high ultrasound resolution. Direct reconstruction methods such as filtered backprojection, time reversal and least squares suffer from curved line artefacts and blurring, especially in case of limited angles or strong noise. In recent years, there has been great interest in regularised iterative methods. These methods employ prior knowledge on the image to provide higher quality reconstructions. However, easy comparisons between regularisers and their properties are limited, since many tomography implementations heavily rely on the specific regulariser chosen. To overcome this bottleneck, we present a modular reconstruction framework for photoacoustic tomography. It enables easy comparisons between regularisers with different properties, e.g. nonlinear, higher-order or directional. We solve the underlying minimisation problem with an efficient first-order primal-dual algorithm. Convergence rates are optimised by choosing an operator dependent preconditioning strategy. Our reconstruction methods are tested on challenging 2D synthetic and experimental data sets. They outperform direct reconstruction approaches for strong noise levels and limited angle measurements, offering immediate benefits in terms of acquisition time and quality. This work provides a basic platform for the investigation of future advanced regularisation methods in photoacoustic tomography.

math.NA↗

arXiv2015

A method for delineation of bone surfaces in photoacoustic computed tomography of the finger

Photoacoustic imaging of interphalangeal peripheral joints is of interest in the context of using the synovial membrane as a surrogate marker of rheumatoid arthritis. Previous work has shown that ultrasound produced by absorption of light at the epidermis reflects on the bone surfaces within the finger. When the reflected signals are backprojected in the region of interest, artifacts are produced, confounding interpretation of the images. In this work, we present an approach where the photoacoustic signals known to originate from the epidermis, are treated as virtual ultrasound transmitters, and a separate reconstruction is performed as in ultrasound reflection imaging. This allows us to identify the bone surfaces. Further, the identification of the joint space is important as this provides a landmark to localize a region-of-interest in seeking the inflamed synovial membrane. The ability to delineate bone surfaces allows us not only to identify the artifacts, but also to identify the interphalangeal joint space without recourse to new US hardware or a new measurement. We test the approach on phantoms and on a healthy human finger.

physics.med-ph↗

arXiv2014

Initial results of finger imaging using Photoacoustic Computed Tomography

We present a photoacoustic computed tomography investigation on a healthy human finger, to image blood vessels with a focus on vascularity across the interphalangeal joints. The cross-sectional images were acquired using an imager specifically developed for this purpose. The images show rich detail of the digital blood vessels with diameters between 100 $μ$m and 1.5 mm in various orientations and at various depths. Different vascular layers in the skin including the subpapillary plexus could also be visualized. Acoustic reflections on the finger bone of photoacoustic signals from skin were visible in sequential slice images along the finger except at the location of the joint gaps. Not unexpectedly, the healthy synovial membrane at the joint gaps was not detected due to its small size and normal vascularization. Future research will concentrate on studying digits afflicted with rheumatoid arthritis to detect the inflamed synovium with its heightened vascularization, whose characteristics are potential markers for disease activity.

physics.med-ph↗

arXiv2013

A new acoustic lens material for large area detectors in photoacoustic breast tomography

Acoustic lenses made of acrylic plastic (PMMA) have been used to enlarge the acceptance angle of sensitive large surface area detectors and improve lateral resolution. However, PMMA lenses introduce image artifacts due to ultrasound internal reflections within the lenses. In this work we investigated this issue proposing a new lens material Stycast 1090SI. We characterized the acoustic properties of the proposed material in comparison with PMMA. Detector performance using negative lenses with the two materials, was tested using finite element simulation and experiment. Further the image quality of a photoacoustic tomography system was studied using k-Wave simulation and experiment. Our acoustic characterization showed that Stycast 1090SI has tissue-like acoustic impedance, high speed of sound and low acoustic attenuation. Both acoustic lenses show significant enlargement of detector acceptance angle and lateral resolution improvement. However, image artifacts induced by acoustic lenses are reduced using the proposed lens compared to PMMA lens.

physics.med-ph↗

arXiv2013

The 'nanobig rods' class of gold nanorods: optimized dimensions for improved in vivo therapeutic and imaging efficacy

Currently, gold nanorods can be synthesized in a wide range of sizes. However, for intended biological applications gold nanorods with approximate dimensions 50 nm x 15 nm are used. We investigate by computer simulation the effect of particle dimensions on the optical and thermal properties in the context of the specific applications of photoacoustic imaging. In addition we discuss the influence of particle size in overcoming the following biophysical barriers when administrated in vivo: extravasation, avoidance of uptake by organs of the reticuloendothelial system, penetration through the interstitium, binding capability and uptake by the target cells. Although more complex biological influences can be introduced in future analysis, the present work illustrates that larger gold nanorods, designated by us as "nanobig rods", may perform relatively better at meeting the requirements for successful in vivo applications compared to their smaller counterparts which are conventionally used.

physics.med-ph↗

arXiv2013

An optimized ultrasound detector for photoacoustic breast tomography

Photoacoustic imaging has proven to be able to detect vascularization-driven optical absorption contrast associated with tumors. In order to detect breast tumors located a few centimeter deep in tissue, a sensitive ultrasound detector is of crucial importance for photoacoustic mammography. Further, because the expected photoacoustic frequency bandwidth (a few MHz to tens of kHz) is inversely proportional to the dimensions of light absorbing structures (0.5 to 10+ mm), proper choices of materials and their geometries, and proper considerations in design have to be made for optimal photoacoustic detectors. In this study, we design and evaluate a specialized ultrasound detector for photoacoustic mammography. Based on the required detector sensitivity and its frequency response, a selection of active material and matching layers and their geometries is made leading to a functional detector models. By iteration between simulation of detector performances, fabrication and experimental characterization of functional models an optimized implementation is made and evaluated. The experimental results of the designed first and second functional detectors matched with the simulations. In subsequent bare piezoelectric samples the effect of lateral resonances was addressed and their influence minimized by sub-dicing the samples. Consequently, using simulations, the final optimized detector could be designed, with a center frequency of 1 MHz and a -6 dB bandwidth of ~80%. The minimum detectable pressure was measured to be 0.5 Pa, which will facilitate deeper imaging compared to the currrent systems. The detector should be capable of detecting vascularized tumors with resolution of 1-2 mm. Further improvements by proper electrical grounding and shielding and implementation of this design into an arrayed detector will pave the way for clinical applications of photoacoustic mammography.

physics.med-ph↗

arXiv2012

Speed-of-sound compensated photoacoustic tomography for accurate imaging

In most photoacoustic (PA) measurements, variations in speed-of-sound (SOS) of the subject are neglected under the assumption of acoustic homogeneity. Biological tissue with spatially heterogeneous SOS cannot be accurately reconstructed under this assumption. We present experimental and image reconstruction methods with which 2-D SOS distributions can be accurately acquired and reconstructed, and with which the SOS map can be used subsequently to reconstruct highly accurate PA tomograms. We begin with a 2-D iterative reconstruction approach in an ultrasound transmission tomography (UTT) setting, which uses ray refracted paths instead of straight ray paths to recover accurate SOS images of the subject. Subsequently, we use the SOS distribution in a new 2-D iterative approach, where refraction of rays originating from PA sources are accounted for in accurately retrieving the distribution of these sources. Both the SOS reconstruction and SOS-compensated PA reconstruction methods utilize the Eikonal equation to model acoustic wavefront propagation, which is solved using a high accuracy fast marching method (HAFMM). We validate the new reconstruction algorithms using numerical phantoms. For experiments we use the PER-PACT method which can be used to simultaneously acquire SOS and PA data from subjects. We test the reconstruction algorithms using experimental data acquired with the PER-PACT setup from challenging physical phantoms. The results show that it is important to take SOS inhomogeneities into account. The iterative reconstruction algorithms, that model acoustic refractive effects, yield artifact-free highly accurate images. Our approach of using the hybrid measurement method and the new reconstruction algorithms, is successful in substantially improving the quality of PA images with a minimization of blurring and artefacts.

physics.med-ph↗