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Stéphane Joost

Publications and source records attributed to Stéphane Joost.

2 recordsLinked to original sources

Detecting animals in African Savanna with UAVs and the crowds

Unmanned aerial vehicles (UAVs) offer new opportunities for wildlife monitoring, with several advantages over traditional field-based methods. They have readily been used to count birds, marine mammals and large herbivores in different environments, tasks which are routinely performed through manual counting in large collections of images. In this paper, we propose a semi-automatic system able to detect large mammals in semi-arid Savanna. It relies on an animal-detection system based on machine learning, trained with crowd-sourced annotations provided by volunteers who manually interpreted sub-decimeter resolution color images. The system achieves a high recall rate and a human operator can then eliminate false detections with limited effort. Our system provides good perspectives for the development of data-driven management practices in wildlife conservation. It shows that the detection of large mammals in semi-arid Savanna can be approached by processing data provided by standard RGB cameras mounted on affordable fixed wings UAVs.

cs.CV↗

High performance computation of landscape genomic models integrating local indices of spatial association

Since its introduction, landscape genomics has developed quickly with the increasing availability of both molecular and topo-climatic data. The current challenges of the field mainly involve processing large numbers of models and disentangling selection from demography. Several methods address the latter, either by estimating a neutral model from population structure or by inferring simultaneously environmental and demographic effects. Here we present Sam$β$ada, an integrated approach to study signatures of local adaptation, providing rapid processing of whole genome data and enabling assessment of spatial association using molecular markers. Specifically, candidate loci to adaptation are identified by automatically assessing genome-environment associations. In complement, measuring the Local Indicators of Spatial Association (LISA) for these candidate loci allows to detect whether similar genotypes tend to gather in space, which constitutes a useful indication of the possible kinship relationship between individuals. In this paper, we also analyze SNP data from Ugandan cattle to detect signatures of local adaptation with Sam$β$ada, BayEnv, LFMM and an outlier method (FDIST approach in Arlequin) and compare their results. Sam$β$ada is an open source software for Windows, Linux and MacOS X available at \url{http://lasig.epfl.ch/sambada}

q-bio.PE↗