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Stefan Balev

Publications and source records attributed to Stefan Balev.

4 recordsLinked to original sources

The Shortest Temporal Exploration Problem

A temporal graph is a graph for which the edge set can change from one time step to the next. This paper considers undirected temporal graphs defined over L time steps and connected at each time step. We study the Shortest Temporal Exploration Problem (STEXP) that, given all the evolution of the graph, asks for a temporal walk that starts at a given vertex, moves over at most one edge at each time step, visits all the vertices, takes at most L time steps and traverses the smallest number of edges. . We prove that every constantly connected temporal graph with n vertices can be explored with O(n 1.5 ) edges traversed within O(n 3.5 ) time steps. This result improves the upper bound of O(n 2 ) edges for an exploration provided by the upper bound of time steps for an exploration which is also O(n 2 ). Morever, we study the case where the graph has a diameter bounded by a parameter k at each time step and we prove that there exists an exploration which takes O(kn 2 ) time steps and traverses O(kn) edges. Finally, the case where the underlying graph is a cycle is studied and tight bounds are provided on the number of edges traversed in the worst-case if L $\ge$ 2n -3.

math.OC

Morphogenesis of complex networks: a reaction diffusion framework for spatial graphs

A large variety of real systems are composed by entities in relationships which can be represented by networks. In many of these systems, elements are embedded in the space and location information impacts properties and evolution. Local interactions between elements generate different kinds of equilibrium and often indicate a self-organized behaviour. In this paper we are interested in essential mechanisms behind morphogenesis of spatial networks such as street networks. We propose a multi-layer model, where a reaction-diffusion mechanism governs the growth of spatial networks. We study its evolution with some metrics.

physics.soc-ph

Morphogenesis of street networks. A reaction-diffusion system for self-organized cities

Urban morphogenesis is the process of formation of its elements and the specialization of its suburbs. Street networks are the structural part of the system. Understand their formation reveals crucial information about urban transformation and dynamics behind its functioning. In this work we focus on the morphogenesis of street networks and we study it through a spatial network generator model. This latter is composed by three layers (a reaction-diffusion layer, a dynamic vector field and a spatial network) surrounded by an environment. The emerging network feeds back to its morphogenetic elements, driving the model to an unexpected behaviour. We applied the model in a real urban context (Fécamp town, Normandy, France) and we measure properties of obtained networks.

physics.soc-ph

Lagrangian Approaches for a class of Matching Problems in Computational Biology

This paper presents efficient algorithms for solving the problem of aligning a protein structure template to a query amino-acid sequence, known as protein threading problem. We consider the problem as a special case of graph matching problem. We give formal graph and integer programming models of the problem. After studying the properties of these models, we propose two kinds of Lagrangian relaxation for solving them. We present experimental results on real life instances showing the efficiency of our approaches.

q-bio.QM