arXiv subjects

Stefan Haar

Publications and source records attributed to Stefan Haar.

16 recordsLinked to original sources

arXiv2025

Secret Protection in Labeled Petri Nets

We study the secret protection problem (SPP), where the objective is to find a policy of minimal cost ensuring that every execution path from an initial state to a secret state contains a sufficient number of protected events. The problem was originally introduced and studied in the setting of finite automata. In this paper, we extend the framework to labeled Petri nets. We consider two variants of the problem: the Parikh variant, where all occurrences of protected events along an execution path contribute to the security requirement, and the indicator variant, where each protected event is counted only once per execution path. We show that both variants can be solved in exponential space for labeled Petri nets, and that their decision versions are ExpSpace-complete. As a consequence, there is no polynomial-time or polynomial-space algorithm for these problems.

cs.FL↗

arXiv2025

Quantum Petri Nets with Event Structure semantics

Classical Petri nets provide a canonical model of concurrency, with unfolding semantics linking nets, occurrence nets, and event structures. No comparable framework exists for quantum concurrency: existing ''quantum Petri nets'' lack rigorous concurrent and sound quantum semantics, analysis tools, and unfolding theory. We introduce Quantum Petri Nets (QPNs), Petri nets equipped with a quantum valuation compatible with the quantum event structure semantics of Clairambault, De Visme, and Winskel (2019). Our contributions are: (i) a local definition of Quantum Occurrence Nets (LQONs) compatible with quantum event structures, (ii) a construction of QPNs with a well-defined unfolding semantics, (iii) a compositional framework for QPNs. This establishes a semantically well grounded model of quantum concurrency, bridging Petri net theory and quantum programming.

cs.LO↗

arXiv2025

Quantum Petri Nets with Event Structures semantics

cs.LO↗

arXiv2025

Continuous Petri Nets Faithfully Fluidify Most Permissive Boolean Networks

The analysis of biological networks has benefited from the richness of Boolean networks (BNs) and the associated theory. These results have been further fortified in recent years by the emergence of Most Permissive (MP) semantics, combining efficient analysis methods with a greater capacity of explaining pathways to states hitherto thought unreachable, owing to limitations of the classical update modes. While MPBNs are understood to capture any behaviours that can be observed at a lower level of abstraction, all the way down to continuous refinements, the specifics and potential of the models and analysis, especially attractors, across the abstraction scale remain unexplored. Here, we fluidify MPBNs by means of Continuous Petri nets (CPNs), a model of (uncountably infinite) dynamic systems that has been successfully explored for modelling and theoretical purposes. CPNs create a formal link between MPBNs and their continuous dynamical refinements such as ODE models. The benefits of CPNs extend beyond the model refinement, and constitute well established theory and analysis methods, recently augmented by abstract and symbolic reachability graphs. These structures are shown to compact the possible behaviours of the system with focus on events which drive the choice of long-term behaviour in which the system eventually stabilises. The current paper brings an important keystone to this novel methodology for biological networks, namely the proof that extant PN encoding of BNs instantiated as a CPN simulates the MP semantics. In spite of the underlying dynamics being continuous, the analysis remains in the realm of discrete methods, constituting an extension of all previous work.

cs.DM↗

arXiv2024

Attractor Basins in Concurrent Systems

A crucial question in analyzing a concurrent system is to determine its long-run behaviour, and in particular, whether there are irreversible choices in its evolution, leading into parts of the reachability space from which there is no return to other parts. Casting this problem in the unifying framework of safe Petri nets, our previous work has provided techniques for identifying attractors, i.e. terminal strongly connected components of the reachability space. What we aim at is to determine the attraction basins associated to those attractors; that is, those states from where all infinite runs are doomed to end in the given attractor, as opposed to those that are free to evolve differently. Here, we provide a solution for the case of safe Petri nets. Our algorithm uses net unfoldings and provides a map of all of those configurations (concurrent executions of the system) that lead onto cliff-edges, i.e. any maximal extension for those configurations lies in some basin that is considered fatal.

cs.FL↗

arXiv2023

Taking Complete Finite Prefixes To High Level, Symbolically

Unfoldings are a well known partial-order semantics of P/T Petri nets that can be applied to various model checking or verification problems. For high-level Petri nets, the so-called symbolic unfolding generalizes this notion. A complete finite prefix of a P/T Petri net's unfolding contains all information to verify, e.g., reachability of markings. We unite these two concepts and define complete finite prefixes of the symbolic unfolding of high-level Petri nets. For a class of safe high-level Petri nets, we generalize the well-known algorithm by Esparza et al. for constructing small such prefixes. We evaluate this extended algorithm through a prototype implementation on four novel benchmark families. Additionally, we identify a more general class of nets with infinitely many reachable markings, for which an approach with an adapted cut-off criterion extends the complete prefix methodology, in the sense that the original algorithm cannot be applied to the P/T net represented by a high-level net.

cs.LO↗

arXiv2022

Avoid One's Doom: Finding Cliff-Edge Configurations in Petri Nets

A crucial question in analyzing a concurrent system is to determine its long-run behaviour, and in particular, whether there are irreversible choices in its evolution, leading into parts of the reachability space from which there is no return to other parts. Casting this problem in the unifying framework of safe Petri nets, our previous work has provided techniques for identifying attractors, i.e. terminal strongly connected components of the reachability space, whose attraction basins we wish to determine. Here, we provide a solution for the case of safe Petri nets. Our algorithm uses net unfoldings and provides a map of all of the system's configurations (concurrent executions) that act as cliff-edges, i.e. any maximal extension for those configurations lies in some basin that is considered fatal. The computation turns out to require only a relatively small prefix of the unfolding, just twice the depth of Esparza's complete prefix.

cs.FL↗

arXiv2020

Most Permissive Semantics of Boolean Networks

As shown in (http://dx.doi.org/10.1101/2020.03.22.998377), the usual update modes of Boolean networks (BNs), including synchronous and (generalized) asynchronous, fail to capture behaviors introduced by multivalued refinements. Thus, update modes do not allow a correct abstract reasoning on dynamics of biological systems, as they may lead to reject valid BN models.This technical report lists the main definitions and properties of the most permissive semantics of BNs introduced in http://dx.doi.org/10.1101/2020.03.22.998377. This semantics meets with a correct abstraction of any multivalued refinements, with any update mode. It subsumes all the usual updating modes, while enabling new behaviors achievable by more concrete models. Moreover, it appears that classical dynamical analyzes of reachability and attractors have a simpler computational complexity:- reachability can be assessed in a polynomial number of iterations. The computation of iterations is in NP in the very general case, and is linear when local functions are monotonic, or with some usual representations of functions of BNs (binary decision diagrams, Petri nets, automata networks, etc.). Thus, reachability is in P with locally-monotonic BNs, and P$^{\text{NP}}$ otherwise (instead of being PSPACE-complete with update modes);- deciding wherever a configuration belongs to an attractor is in coNP with locally-monotonic BNs, and coNP$^{\text{coNP}}$ otherwise (instead of PSPACE-complete with update modes).Furthermore, we demonstrate that the semantics completely captures any behavior achievable with any multilevel or ODE refinement of the BN; and the semantics is minimal with respect to this model refinement criteria: to any most permissive trajectory, there exists a multilevel refinement of the BN which can reproduce it.In brief, the most permissive semantics of BNs enables a correct abstract reasoning on dynamics of BNs, with a greater tractability than previously introduced update modes.

cs.FL↗

arXiv2019

Concurrency in Boolean networks

Boolean networks (BNs) are widely used to model the qualitative dynamics of biological systems. Besides the logical rules determining the evolution of each component with respect to the state of its regulators, the scheduling of component updates can have a dramatic impact on the predicted behaviours. In this paper, we explore the use of Read (contextual) Petri Nets (RPNs) to study dynamics of BNs from a concurrency theory perspective. After showing bi-directional translations between RPNs and BNs and analogies between results on synchronism sensitivity, we illustrate that usual updating modes for BNs can miss plausible behaviours, i.e., incorrectly conclude on the absence/impossibility of reaching specific configurations. We propose an encoding of BNs capitalizing on the RPN semantics enabling more behaviour than the generalized asynchronous updating mode. The proposed encoding ensures a correct abstraction of any multivalued refinement, as one may expect to achieve when modelling biological systems with no assumption on its time features.

cs.LO↗

arXiv2018

Combining Refinement of Parametric Models with Goal-Oriented Reduction of Dynamics

Parametric models abstract part of the specification of dynamical models by integral parameters. They are for example used in computational systems biology, notably with parametric regulatory networks, which specify the global architecture (interactions) of the networks, while parameterising the precise rules for drawing the possible temporal evolutions of the states of the components. A key challenge is then to identify the discrete parameters corresponding to concrete models with desired dynamical properties. This paper addresses the restriction of the abstract execution of parametric regulatory (discrete) networks by the means of static analysis of reachability properties (goal states). Initially defined at the level of concrete parameterised models, the goal-oriented reduction of dynamics is lifted to parametric networks, and is proven to preserve all the minimal traces to the specified goal states. It results that one can jointly perform the refinement of parametric networks (restriction of domain of parameters) while reducing the necessary transitions to explore and preserving reachability properties of interest.

cs.LO↗

arXiv2018

Parameter Space Abstraction and Unfolding Semantics of Discrete Regulatory Networks

The modelling of discrete regulatory networks combines a graph specifying the pairwise influences between the variables of the system, and a parametrisation from which can be derived a discrete transition system. Given the influence graph only, the exploration of admissible parametrisations and the behaviours they enable is computationally demanding due to the combinatorial explosions of both parametrisation and reachable state space. This article introduces an abstraction of the parametrisation space and its refinement to account for the existence of given transitions, and for constraints on the sign and observability of influences. The abstraction uses a convex sublattice containing the concrete parametrisation space specified by its infimum and supremum parametrisations. It is shown that the computed abstractions are optimal, i.e., no smaller convex sublattice exists. Although the abstraction may introduce over-approximation, it has been proven to be conservative with respect to reachability of states. Then, an unfolding semantics for Parametric Regulatory Networks is defined, taking advantage of concurrency between transitions to provide a compact representation of reachable transitions. A prototype implementation is provided: it has been applied to several examples of Boolean and multi-valued networks, showing its tractability for networks with numerous components.

cs.DM↗

arXiv2016

Relationship between the Reprogramming Determinants of Boolean Networks and their Interaction Graph

In this paper, we address the formal characterization of targets triggering cellular trans-differentiation in the scope of Boolean networks with asynchronous dynamics. Given two fixed points of a Boolean network, we are interested in all the combinations of mutations which allow to switch from one fixed point to the other, either possibly, or inevitably. In the case of existential reachability, we prove that the set of nodes to (permanently) flip are only and necessarily in certain connected components of the interaction graph. In the case of inevitable reachability, we provide an algorithm to identify a subset of possible solutions.

cs.DM↗

arXiv2015

Unfolding-Based Process Discovery

This paper presents a novel technique for process discovery. In contrast to the current trend, which only considers an event log for discovering a process model, we assume two additional inputs: an independence relation on the set of logged activities, and a collection of negative traces. After deriving an intermediate net unfolding from them, we perform a controlled folding giving rise to a Petri net which contains both the input log and all independence-equivalent traces arising from it. Remarkably, the derived Petri net cannot execute any trace from the negative collection. The entire chain of transformations is fully automated. A tool has been developed and experimental results are provided that witness the significance of the contribution of this paper.

cs.LO↗

arXiv2011

Computing the Reveals Relation in Occurrence Nets

Petri net unfoldings are a useful tool to tackle state-space explosion in verification and related tasks. Moreover, their structure allows to access directly the relations of causal precedence, concurrency, and conflict between events. Here, we explore the data structure further, to determine the following relation: event a is said to reveal event b iff the occurrence of a implies that b inevitably occurs, too, be it before, after, or concurrently with a. Knowledge of reveals facilitates in particular the analysis of partially observable systems, in the context of diagnosis, testing or verification; it can also be used to generate more concise representations of behaviours via abstractions. The reveals relation was previously introduced in the context of fault diagnosis, where it was shown that the reveals relation was decidable: for a given pair a,b in the unfolding U of a safe Petri net N, a finite prefix P of U is sufficient to decide whether or not a reveals b. In this paper, we first considerably improve the bound on |P|. We then show that there exists an efficient algorithm for computing the relation on a given prefix. We have implemented the algorithm and report on experiments.

cs.LO↗

arXiv2008

Monotony in Service Orchestrations

Web Service orchestrations are compositions of different Web Services to form a new service. The services called during the orchestration guarantee a given performance to the orchestrater, usually in the form of contracts. These contracts can be used by the orchestrater to deduce the contract it can offer to its own clients, by performing contract composition. An implicit assumption in contract based QoS management is: "the better the component services perform, the better the orchestration's performance will be". Thus, contract based QoS management for Web services orchestrations implicitly assumes monotony. In some orchestrations, however, monotony can be violated, i.e., the performance of the orchestration improves when the performance of a component service degrades. This is highly undesirable since it can render the process of contract composition inconsistent. In this paper we define monotony for orchestrations modelled by Colored Occurrence Nets (CO-nets) and we characterize the classes of monotonic orchestrations. We show that few orchestrations are indeed monotonic, mostly since latency can be traded for quality of data. We also propose a sound refinement of monotony, called conditional monotony, which forbids this kind of cheating and show that conditional monotony is widely satisfied by orchestrations. This finding leads to reconsidering the way SLAs should be formulated.

cs.NI↗

arXiv2007

Blocking a transition in a Free Choice net and what it tells about its throughput

In a live and bounded Free Choice Petri net, pick a non-conflicting transition. Then there exists a unique reachable marking in which no transition is enabled except the selected one. For a routed live and bounded Free Choice net, this property is true for any transition of the net. Consider now a live and bounded stochastic routed Free Choice net, and assume that the routings and the firing times are independent and identically distributed. Using the above results, we prove the existence of asymptotic firing throughputs for all transitions in the net. Furthermore the vector of the throughputs at the different transitions is explicitly computable up to a multiplicative constant.

cs.OH↗