arXiv subjects

Stefan Vogt-Geisse

Publications and source records attributed to Stefan Vogt-Geisse.

9 recordsLinked to original sources

arXiv2026

Binding Energies of Astrophysically Relevant Molecules on CO$_2$ Clusters: Benchmarking and the Donor-Acceptor Origin of Surface-Dependent Binding

Carbon dioxide (CO$_2$) is among the most abundant interstellar ices and has been observed by JWST in water-rich mixtures and pure CO$_2$ environments. Astrochemical models adopt binding energies (BEs) measured on water ice because few BEs are available for CO$_2$ ice. We calculate BE distributions for twelve adsorbates (N$_2$, CH$_4$, HCl, C$_2$H$_2$, H$_2$S, HF, HCN, H$_2$CO, HCOOH, HNC, CH$_3$OH, H$_2$O) on CO$_2$ clusters containing two to five molecules using DFT calibrated against CCSD(T)/CBS, a coupled-cluster treatment extrapolated to the complete-basis-set limit. Binding strength depends on whether the adsorbate requires the surface to donate a hydrogen bond (H-bond). CO$_2$ can accept an H-bond but cannot donate one, and all six species compared with water ice from Ahmad et al. (2026) bind more weakly on CO$_2$. The ratio of the BE on CO$_2$ to water ice ranges from 0.66 for H$_2$CO and 0.75 for H$_2$O to 0.87 for CH$_3$OH, 0.89 for HCOOH and 0.92 for C$_2$H$_2$. Formaldehyde is predicted to desorb near 57 K from CO$_2$-rich ice, compared with 85 K from water-rich ice, and could contribute to cold gas-phase H$_2$CO. Although the mean binding energies are changing with cluster size for several species, the differences can be traced to local binding interactions likely to remain important in larger ice models. The BEs vary by more than 500 K between sites, while the desorption peaks range from 11 K for CH$_4$ to 132 K for HCOOH. The limited H-bonding capacity of CO$_2$ may favour separation of mixed H$_2$O:CO$_2$ ice into CO$_2$-rich domains.

astro-ph.GA↗

arXiv2026

Theoretical determination of the binding energies of methanol and related species onto amorphous solid water ice

The formation and survival of complex organic molecules (COMs) in cold interstellar environments depends on their interactions with icy dust grain surfaces. Methanol, a key COM detected in cold cores and protoplanetary disks, is believed to form on amorphous solid water (ASW) through surface reactions and reside there until it is desorbed into the gas phase. We present a theoretical study of the binding energies (BEs) of methanol and its photolysis-derived species on ASW clusters by means of dispersion-corrected density functional theory (DFT) using a refined protocol implemented in the Binding Energy Evaluation Platform (BEEP). Molecules capable of hydrogen bonding, such as H2O, CH3OH, HCOOH, and OH, exhibit high BEs and broad BE distributions that reflect the structural heterogeneity of the ASW surface. In contrast, weakly interacting volatiles including CO, CO2, CH4, and CH3 display narrower distributions dominated by dispersion interactions. Open-shell radicals such as CH2OH and OH bind more strongly than HCO and CH3 due to their ability to form directional hydrogen bonds. Incorporation of our BEs into an astrochemical model, in conjunction with a recalculation of the pre-exponential factor using transition state theory, demonstrates the sensitivity of model results to the method of calculation of the grain-surface reaction rates. The new approach generally predicts a higher abundance of radicals on the ice that are key reactants for the formation of COMs when surface diffusion is assumed to be efficient. These findings emphasize the importance of incorporating BEs that have been determined in a self-consistent manner into astrochemical models, and provide reliable theoretical benchmarks for species with limited experimental data.

astro-ph.GA↗

arXiv2026

CO Diffusion on Interstellar Amorphous Solid Water: A Computational Study

Surface chemistry on interstellar dust grains is recognized as a central component in astrochemical models, representing a plausible formation route for many of the observed complex molecular species. However, key parameters governing interstellar surface chemistry, such as diffusion energy barriers, remain poorly constrained. In particular, surface diffusion constitutes a fundamental step for the synthesis of complex organic molecules and plays a crucial role in understanding the desorption process. In this paper, the diffusion dynamics of carbon monoxide (CO) on amorphous solid water (ASW) surfaces, representative of interstellar ices, is modeled with quantum-chemical methods. Employing a representative ensemble of water clusters, each made by 22 molecules, diffusion energy barriers between the binding sites are computed using Density Functional Theory. Diffusion rate coefficients are then determined by applying the harmonic approximation of Transition State Theory. The results, in agreement with experimental studies, revealed a wide distribution of diffusion energies. This reflects the intrinsic topological heterogeneity of ASW surfaces, and highlights how surface mobility significantly influences CO's desorption dynamics and, as a consequence, surface-mediated reactivity in interstellar environments. We show that key parameters commonly employed in astrochemical models, like the ratio between binding and diffusion energy, should be carefully revised.

astro-ph.GA↗

arXiv2025

CO Adsorption Sites on Interstellar Water Ices Explored with Machine Learning Potentials. Binding energy distributions and snowline

Context. Carbon monoxide (CO) is arguably the most important molecule for interstellar organic chemistry. Its binding to amorphous solid water (ASW) ice regulates both diffusion and desorption processes. Accurately characterizing the CO binding energy (BE) is essential for realistic astrochemical modeling. Aims. We aim to derive a statistically robust and physically accurate distribution of CO BEs on ASW surfaces, and to evaluate its implications for laboratory temperature-programmed desorption experiments and interstellar chemistry, with a focus on protoplanetary disks. Methods. We trained a machine-learned potential (MLP) on 8321 density functional theory (DFT) energies and gradients of CO interacting with differently-sized water clusters (22-60 water molecules). The DFT method was selected after extensive benchmark. With this potential we built realistic non-porous and porous ASW surfaces, and computed a BE distribution. We used symmetry-adapted perturbation theory to rationalize the interaction of CO on the different binding sites. Results. We find that both ASW morphologies yield similar Gaussian-like BE distributions with mean values near 900 K. However, the nature of the binding interactions is rather different and critically depends on surface roughness and dangling-OH bonds. Simulated TPD curves reproduce experimental trends across several coverage regimes. From an astrochemical point of view, the application of the full BE distribution has a dramatic influence on the CO distribution in protoplanetary disks, leading to a broader CO snowline region, improving predictions of CO gas-ice partitioning, and suggesting an equally broader distribution of organics in these objects.

astro-ph.GA↗

arXiv2024

Pathways to Interstellar Amides via Carbamoyl (NH2CO) Isomers by Radical-Neutral Reactions on Ice Grain Mantles

Explaining the formation pathways of amides on ice-grain mantels is crucial to understanding the prebiotic chemistry in an interstellar medium. In this computational study, we explore different radical-neutral formation pathways for some of the observed amides (formamide, acetamide, urea, and N-methylformamide) via intermediate carbamoyl (NH2CO) radical precursors and their isomers. We assess the relative energy of four NH2CO isomers in the gas phase and evaluate their binding energy on small water clusters to discern the affinity that the isomers present to an ice model. We consider three possible reaction pathways for the formation of the carbamoyl radicals, namely, the OH + HCN, CN + H2O, and NH2 + CO reaction channels. We computed the binding energy distribution for the HCN and CH3CN precursors on an ice model consisting of a set of clusters of 22 water molecules each to serve as a starting point for the reactivity study on the ice surface. The computations revealed that the lowest barrier to the formation of an NH2CO isomer corresponds to the NH2 + CO reaction (12.6 kJ/mol). The OH + HCN reaction pathway results in the exothermic formation of the N-radical form of carbamoyl HN(C=O)H with a reaction barrier of 26.7 kJ/mol. We found that the CN + H2O reaction displays a high energy barrier of 70.6 kJ/mol. Finally, we also probed the direct formation of the acetamide radical precursor via the OH + CH3CN reaction and found that the most probable outcome on interstellar ices is the H-abstraction reaction to yield CH2CN and H2O. Based on these results, we believe that including alternative reaction pathways, leading to the formation of amides via the N-radical form of carbamoyl, would provide an improvement in the prediction of the amide abundances in astrochemical models, especially regarding the chemistry of star-forming regions.

astro-ph.GA↗

arXiv2024

In-Depth Exploration of Catalytic Sites on Amorphous Solid Water: I. The Astrosynthesis of Aminomethanol

Chemical processes taking place on ice-grain mantles are pivotal to the complex chemistry of interstellar environments. In this study, we conducted a comprehensive analysis of the catalytic effects of an amorphous solid water (ASW) surface on the reaction between ammonia (NH$_3$) and formaldehyde (H$_2$CO) to form aminomethanol (NH$_2$CH$_2$OH) using density functional theory. We identified potential catalytic sites based on the binding energy distribution of NH$_3$ and H$_2$CO reactants, on a set-of-clusters surface model composed of 22 water molecules and found a total of 14 reaction paths. Our results indicate that the catalytic sites can be categorized into four groups, depending on the interactions of the carbonyl oxygen and the amino group with the ice surface in the reactant complex. A detailed analysis of the reaction mechanism using Intrinsic Reaction Coordinate and reaction force analysis revealed three distinct chemical events for this reaction: formation of the C--N bond, breaking of the N--H bond, and formation of the O--H hydroxyl bond. Depending on the type of catalytic site, these events can occur within a single, concerted, albeit asynchronous, step, or can be isolated in a step-wise mechanism, with the lowest overall transition state energy observed at 1.3 kcal mol$^{-1}$. A key requirement for the low-energy mechanism is the presence of a pair of dangling OH bonds on the surface, found at 5\% of the potential catalytic sites on an ASW porous surface.

astro-ph.GA↗

arXiv2024

The Astrochemistry Low-energy Electron Cross-Section (ALeCS) database I. Semi-empirical electron-impact ionization cross-section calculations and ionization rates

(Abridged) Electron-molecule interaction is a fundamental process in radiation-driven chemistry in space, from the interstellar medium to comets. Therefore, knowledge of interaction cross-sections is key. While there has been a plethora of studies of total ionization cross-sections, data is often spread over many sources, or not public or readily available. We introduce the Astrochemistry Low-energy Electron Cross-Section (ALeCS) database, a public database for electron interaction cross-sections and ionization rates for molecules of astrochemical interest. In this work, we present the first data release comprising total ionization cross-sections and ionization rates for over 200 neutral molecules. We include optimized geometries and molecular orbital energies at various levels of theory, and for a subset of the molecules, the ionization potentials. We compute total ionization cross-sections using the binary-encounter Bethe model and screening-corrected additivity rule, and ionization rates and reaction network coefficients for molecular cloud environments for $>$200 neutral molecules ranging from diatomics to complex organics. We demonstrate that our binary-encounter Bethe cross-sections agree well with experimental data. We show that the ionization rates scale roughly linearly with the number of constituent atoms in the molecule. We introduce and describe the public ALeCS database. For the initial release, we include total ionization cross-sections for $>$200 neutral molecules and several cations and anions calculated with different levels of quantum chemistry theory, the chemical reaction rates for the ionization, and network files in the formats of the two most popular astrochemical networks, the KIDA and UMIST. The database will be continuously updated for more molecules and interactions.

astro-ph.GA↗

arXiv2022

Binding Energy Evaluation Platform: A database of quantum chemical binding energy distributions for the astrochemical community

The quality of astrochemical models is highly dependent on reliable binding energy (BE) values that consider the morphological and energetic variety of binding sites on the surface of ice-grain mantles. Here, we present the Binding Energy Evaluation Platform (BEEP) and database that, using quantum chemical methods, produces full BE distributions of molecules bound to an amorphous solid water (ASW) surface model. BEEP is highly automatized and allows to sample binding sites on set of water clusters and to compute accurate BEs. Using our protocol, we computed 21 BE distributions of interstellar molecules and radicals on an amorphized set of 15-18 water clusters of 22 molecules each. The distributions contain between 225 and 250 unique binding sites. We apply a Gaussian fit and report the mean and standard deviation for each distribution. We compare with existing experimental results and find that the low and high coverage experimental BEs coincide well with the high BE tail and mean value of our distributions, respectively. Previously reported single BE theoretical values are broadly in line with ours, even though in some cases significant differences can be appreciated. We show how the use of different BE values impact a typical problem in astrophysics, such as the computation of snow lines in protoplanetary discs. BEEP will be publicly released so that the database can be expanded to other molecules or ice-models in a community effort.

astro-ph.IM↗

arXiv2020

High level ab initio binding energy distribution of molecules on interstellar ices: Hydrogen fluoride

The knowledge of the binding energy of molecules on astrophysically relevant ices can help to obtain an estimate of the desorption rate, i.e. the molecules residence time on the surface. This represents an important parameter for astrochemical models, crucial to determine the chemical fate of complex organic molecules formed on dust grains and observed in the densest regions of the interstellar medium. In this work, we propose a new robust procedure to study the interaction of atoms and molecules with interstellar ices, based on \textit{ab initio} molecular dynamics and density functional theory, validated by high-level \textit{ab initio} methods at a CCSD(T)/CBS level. We have applied this procedure to hydrogen fluoride (HF), a promising tracer of the molecular content of galaxies. In total we found 13 unique equilibrium structures of HF binding to small water clusters of up to 4 molecules, with binding energies ranging from 1208 to 7162 K. We computed a 22-molecules model of amorphous solid water (ASW) surface using \textit{ab initio} molecular dynamics simulations and carried out a systematic analysis of the binding sites of HF, in terms of binding modes and binding energies. Considering 10 different water clusters, we found a binding energy distribution with an average value of $5313\pm74$ K, and a dispersion of $921\pm115$ K. Finally, the effect of the electrostatic field of the 22 water molecules on the binding energies was investigated incrementally by symmetry adapted perturbation theory, in order to gauge the effect of the water environment. The results indicate that the extent of the electrostatic interaction of HF with ASW depends strongly on the properties of the binding site. We expect that this work will provide a solid foundation for a systematic development of a binding energy distribution database of molecules on interstellar surfaces.

astro-ph.GA↗