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Stephan Mohr

Publications and source records attributed to Stephan Mohr.

23 records · Page 2Linked to original sources

Daubechies Wavelets for Linear Scaling Density Functional Theory

We demonstrate that Daubechies wavelets can be used to construct a minimal set of optimized localized contracted basis functions in which the Kohn-Sham orbitals can be represented with an arbitrarily high, controllable precision. Ground state energies and the forces acting on the ions can be calculated in this basis with the same accuracy as if they were calculated directly in a Daubechies wavelets basis, provided that the amplitude of these contracted basis functions is sufficiently small on the surface of the localization region, which is guaranteed by the optimization procedure described in this work. This approach reduces the computational costs of DFT calculations, and can be combined with sparse matrix algebra to obtain linear scaling with respect to the number of electrons in the system. Calculations on systems of 10,000 atoms or more thus become feasible in a systematic basis set with moderate computational resources. Further computational savings can be achieved by exploiting the similarity of the contracted basis functions for closely related environments, e.g. in geometry optimizations or combined calculations of neutral and charged systems.

cond-mat.mtrl-sci↗

Minima Hopping Guided Path Search: An Efficient Method for Finding Complex Chemical Reaction Pathways

The Minima Hopping global optimization method uses physically realizable molecular dynamics moves in combination with an energy feedback that guarantees the escape from any potential energy funnel. For the purpose of finding reactions pathways, we argue that Minima Hopping is particularly suitable as a guide through the potential energy landscape and as a generator for pairs of minima that can be used as input structures for methods capable of finding transition states between two minima. For Lennard-Jones benchmark systems we compared this Minima Hopping guided path search method to a known approach for the exploration of potential energy landscapes that is based on deterministic mode-following. Although we used a stabilized mode-following technique that reliably allows to follow distinct directions when escaping from a local minimum, we observed that Minima Hopping guided path search is far superior in finding lowest-barrier reaction pathways. We therefore suggest that Minima Hopping guided path search can be used as a simple and efficient way to identify energetically low-lying chemical reaction pathways. Finally we applied the Minima Hopping guided path search approach to 75-atom and 102-atom Lennard Jones systems. For the 75-atom system we found pathways whose highest energies are significantly lower than the highest energy along the previously published lowest-barrier pathway. Furthermore, many of these pathways contain a smaller number of intermediate transition states than the previously publish lowest-barrier pathway. In case of the 102-atom system Minima Hopping guided path search found a previously unknown and energetically low-lying funnel.

cond-mat.mtrl-sci↗

Metrics for measuring distances in configuration spaces

In order to characterize molecular structures we introduce configurational fingerprint vectors which are counterparts of quantities used experimentally to identify structures. The Euclidean distance between the configurational fingerprint vectors satisfies the properties of a metric and can therefore safely be used to measure dissimilarities between configurations in the high dimensional configuration space. We show that these metrics correlate well with the RMSD between two configurations if this RMSD is obtained from a global minimization over all translations, rotations and permutations of atomic indices. We introduce a Monte Carlo approach to obtain this global minimum of the RMSD between configurations.

cond-mat.mtrl-sci↗

Boron aggregation in the ground states of boron-carbon fullerenes

We present novel structural motifs for boron-carbon nano-cages of the stochiometries B12C48 and B12C50, based on first principle calculations. These configurations are distinct from those proposed so far by the fact that the boron atoms are not isolated and distributed over the entire surface of the cages, but rather aggregate at one location to form a patch. Our putative ground state of B12C48 is 1.8 eV lower in energy than the previously proposed ground state and violates all the suggested empirical rules for constructing low energy fullerenes. The B12C50 configuration is energetically even more favorable than B12C48, showing that structures derived from the C60 Buckminsterfullerene are not necessarily magic sizes for heterofullerenes.

cond-mat.mtrl-sci↗

Efficient moves for global geometry optimization methods and their application to binary systems

We show that molecular dynamics based moves in the Minima Hopping (MH) method are more efficient than saddle point crossing moves which select the lowest possible saddle point. For binary systems we incorporate identity exchange moves in a way that allows to avoid the generation of high energy configurations. Using this modified Minima Hopping method we reexamine the binary Lennard Jones (BLJ) benchmark system with up to 100 atoms and we find a large number of new putative global minima structures.

cond-mat.stat-mech↗