SearcharxivSearch

arXiv subjects

Stephanie Keller-Schmidt

Publications and source records attributed to Stephanie Keller-Schmidt.

2 recordsLinked to original sources

Anomalous scaling in an age-dependent branching model

We introduce a one-parametric family of tree growth models, in which branching probabilities decrease with branch age $τ$ as $τ^{-α}$. Depending on the exponent $α$, the scaling of tree depth with tree size $n$ displays a transition between the logarithmic scaling of random trees and an algebraic growth. At the transition ($α=1$) tree depth grows as $(\log n)^2$. This anomalous scaling is in good agreement with the trend observed in evolution of biological species, thus providing a theoretical support for age-dependent speciation and associating it to the occurrence of a critical point.

q-bio.PE

A model of macro-evolution as a branching process based on innovations

We introduce a model for the evolution of species triggered by generation of novel features and exhaustive combination with other available traits. Under the assumption that innovations are rare, we obtain a bursty branching process of speciations. Analysis of the trees representing the branching history reveals structures qualitatively different from those of random processes. For a tree with n leaves, the average distance of leaves from root scales as (log n)^2 to be compared to log n for random branching. The mean values and standard deviations for the tree shape indices depth (Sackin index) and imbalance (Colless index) of the model are compatible with those of real phylogenetic trees from databases. Earlier models, such as the Aldous' branching (AB) model, show a larger deviation from data with respect to the shape indices.

q-bio.PE