arXiv subjects

Stephen J. Smith

Publications and source records attributed to Stephen J. Smith.

13 recordsLinked to original sources

arXiv2025

Characterization of a TES-based Anti-Coincidence Detector for Future Large Field-of-View X-ray Calorimetry Missions

Microcalorimeter instruments aboard future X-ray observatories will require an anti-coincidence (anti-co) detector to veto charged particle events and reduce the non-X-ray background. We have developed a large-format, TES-based prototype anti-coincidence detector that is particularly suitable for use with spatially-extended (~ 10 cm^2}) TES microcalorimeter arrays, as would be used for a future large field-of-view X-ray missions. This prototype was developed in the context of the Line Emission Mapper (LEM) probe concept, which required a ~ 14 cm^2 anti-co detector with > 95% live time and a low-energy threshold below 20 keV. Our anti-co design employs parallel networks of quasiparticle-trap-assisted electrothermal feedback TESs (QETs) to detect the athermal phonon signal produced in the detector substrate by incident charged particles. We developed multiple prototype anti-co designs featuring 12 channels and up to 6300 QETs. Here we focus on a design utilizing tungsten TESs and present characterization results. Broad energy range measurements have been performed (4.1 keV -- 5.5 MeV). Based on noise and responsivity measurements, the implied low-energy threshold is < 1 keV and a live time fraction of > 96% can be achieved up to 5.5 MeV. We also find evidence of mm-scale-or-better spatial resolution and discuss the potential utility of this for future missions. Finally, we discuss the early development of a soild-state physics model of the anti-co towards understanding phonon propagation and quasiparticle production in the detector.

astro-ph.IM↗

arXiv2024

The first cut is the cheapest: optimizing Athena/X-IFU-like TES detectors resolution by filter truncation

The X-ray Integral Field Unit (X-IFU) instrument on the future ESA mission Athena X-ray Observatory is a cryogenic micro-calorimeter array of Transition Edge Sensor (TES) detectors designed to provide spatially-resolved high-resolution spectroscopy. The onboard reconstruction software provides energy, spatial location and arrival time of incoming X-ray photons hitting the detector. A new processing algorithm based on a truncation of the classical optimal filter and called 0-padding, has been recently proposed aiming to reduce the computational cost without compromising energy resolution. Initial tests with simple synthetic data displayed promising results. This study explores the slightly better performance of the 0-padding filter and assess its final application to real data. The goal is to examine the larger sensitivity to instrumental conditions that was previously observed during the analysis of the simulations. This 0-padding technique is thoroughly tested using more realistic simulations and real data acquired from NASA and NIST laboratories employing X-IFU-like TES detectors. Different fitting methods are applied to the data, and a comparative analysis is performed to assess the energy resolution values obtained from these fittings. The 0-padding filter achieves energy resolutions as good as those obtained with standard filters, even with those of larger lengths, across different line complexes and instrumental conditions. This method proves to be useful for energy reconstruction of X-ray photons detected by the TES detectors provided proper corrections for baseline drift and jitter effects are applied. The finding is highly promising especially for onboard processing, offering efficiency in computational resources and facilitating the analysis of sources with higher count rates at high resolution.

astro-ph.IM↗

arXiv2023

Line Emission Mapper (LEM): Probing the physics of cosmic ecosystems

The Line Emission Mapper (LEM) is an X-ray Probe for the 2030s that will answer the outstanding questions of the Universe's structure formation. It will also provide transformative new observing capabilities for every area of astrophysics, and to heliophysics and planetary physics as well. LEM's main goal is a comprehensive look at the physics of galaxy formation, including stellar and black-hole feedback and flows of baryonic matter into and out of galaxies. These processes are best studied in X-rays, and emission-line mapping is the pressing need in this area. LEM will use a large microcalorimeter array/IFU, covering a 30x30' field with 10" angular resolution, to map the soft X-ray line emission from objects that constitute galactic ecosystems. These include supernova remnants, star-forming regions, superbubbles, galactic outflows (such as the Fermi/eROSITA bubbles in the Milky Way and their analogs in other galaxies), the Circumgalactic Medium in the Milky Way and other galaxies, and the Intergalactic Medium at the outskirts and beyond the confines of galaxies and clusters. LEM's 1-2 eV spectral resolution in the 0.2-2 keV band will make it possible to disentangle the faintest emission lines in those objects from the bright Milky Way foreground, providing groundbreaking measurements of the physics of these plasmas, from temperatures, densities, chemical composition to gas dynamics. While LEM's main focus is on galaxy formation, it will provide transformative capability for all classes of astrophysical objects, from the Earth's magnetosphere, planets and comets to the interstellar medium and X-ray binaries in nearby galaxies, AGN, and cooling gas in galaxy clusters. In addition to pointed observations, LEM will perform a shallow all-sky survey that will dramatically expand the discovery space.

astro-ph.IM↗

arXiv2022

First Flight Performance of the Micro-X Microcalorimeter X-Ray Sounding Rocket

The flight of the Micro-X sounding rocket on July 22, 2018 marked the first operation of Transition-Edge Sensors and their SQUID readouts in space. The instrument combines the microcalorimeter array with an imaging mirror to take high-resolution spectra from extended X-ray sources. The first flight target was the Cassiopeia~A Supernova Remnant. While a rocket pointing malfunction led to no time on-target, data from the flight was used to evaluate the performance of the instrument and demonstrate the flight viability of the payload. The instrument successfully achieved a stable cryogenic environment, executed all flight operations, and observed X-rays from the on-board calibration source. The flight environment did not significantly affect the performance of the detectors compared to ground operation. The flight provided an invaluable test of the impact of external magnetic fields and the instrument configuration on detector performance. This flight provides a milestone in the flight readiness of these detector and readout technologies, both of which have been selected for future X-ray observatories.

astro-ph.IM↗

arXiv2021

Maximum diameter of $3$- and $4$-colorable graphs

P. Erdős, J. Pach, R. Pollack, and Z. Tuza [J. Combin. Theory, B 47 (1989), 279--285] made conjectures for the maximum diameter of connected graphs without a complete subgraph $K_{k+1}$, which have order $n$ and minimum degree $δ$. Settling a weaker version of a problem, by strengthening the $K_{k+1}$-free condition to $k$-colorable, we solve the problem for $k=3$ and $k=4$ using a unified linear programming duality approach. The case $k=4$ is a substantial simplification of the result of É. Czabarka, P. Dankelmann, and L. A. Székely [Europ. J. Comb., 30 (2009), 1082--1089].

math.CO↗

arXiv2020

An infinite antichain of planar tanglegrams

Contrary to the expectation arising from the tanglegram Kuratowski theorem of É. Czabarka, L.A. Székely and S. Wagner [SIAM J. Discrete Math. 31(3): 1732--1750, (2017)], we construct an infinite antichain of planar tanglegrams with respect to the induced subtanglegram partial order. R.E. Tarjan, R. Laver, D.A. Spielman and M. Bóna, and possibly others, showed that the partially ordered set of finite permutations ordered by deletion of entries contains an infinite antichain, i.e. there exists an infinite collection of permutations, such that none of them contains another as a pattern. Our construction adds a twist to the construction of Spielman and Bóna [Electr. J. Comb, Vol. 7. N2.]

math.CO↗

arXiv2020

New Light on Cortical Neuropeptides and Synaptic Network Plasticity

Neuropeptides, members of a large and evolutionarily ancient family of proteinaceous cell-cell signaling molecules, are widely recognized as extremely potent regulators of brain function and behavior. At the cellular level, neuropeptides are known to act mainly via modulation of ion channel and synapse function, but functional impacts emerging at the level of complex cortical synaptic networks have resisted mechanistic analysis. New findings from single-cell RNA-seq transcriptomics now illuminate intricate patterns of cortical neuropeptide signaling gene expression and new tools now offer powerful molecular access to cortical neuropeptide signaling. Here we highlight some of these new findings and tools, focusing especially on prospects for experimental and theoretical exploration of peptidergic and synaptic networks interactions underlying cortical function and plasticity.

q-bio.NC↗

arXiv2018

Testing the X-IFU calibration requirements: an example for quantum efficiency and energy resolution

With its array of 3840 Transition Edge Sensors (TESs) operated at 90 mK, the X-Ray Integral Field Unit (X-IFU) on board the ESA L2 mission Athena will provide spatially resolved high-resolution spectroscopy (2.5 eV FWHM up to 7 keV) over the 0.2 to 12 keV bandpass. The in-flight performance of the X-IFU will be strongly affected by the calibration of the instrument. Uncertainties in the knowledge of the overall system, from the filter transmission to the energy scale, may introduce systematic errors in the data, which could potentially compromise science objectives - notably those involving line characterisation e.g. turbulence velocity measurements - if not properly accounted for. Defining and validating calibration requirements is therefore of paramount importance. In this paper, we put forward a simulation tool based on the most up-to-date configurations of the various subsystems (e.g. filters, detector absorbers) which allows us to estimate systematic errors related to uncertainties in the instrumental response. Notably, the effect of uncertainties in the energy resolution and of the instrumental quantum efficiency on X-IFU observations is assessed, by taking as a test case the measurements of the iron K complex in the hot gas surrounding clusters of galaxies. In-flight and ground calibration of the energy resolution and the quantum efficiency is also addressed. We demonstrate that provided an accurate calibration of the instrument, such effects should be low in both cases with respect to statistics during observations.

astro-ph.IM↗

arXiv2016

Probabilistic Fluorescence-Based Synapse Detection

Brain function results from communication between neurons connected by complex synaptic networks. Synapses are themselves highly complex and diverse signaling machines, containing protein products of hundreds of different genes, some in hundreds of copies, arranged in precise lattice at each individual synapse. Synapses are fundamental not only to synaptic network function but also to network development, adaptation, and memory. In addition, abnormalities of synapse numbers or molecular components are implicated in most mental and neurological disorders. Despite their obvious importance, mammalian synapse populations have so far resisted detailed quantitative study. In human brains and most animal nervous systems, synapses are very small and very densely packed: there are approximately 1 billion synapses per cubic millimeter of human cortex. This volumetric density poses very substantial challenges to proteometric analysis at the critical level of the individual synapse. The present work describes new probabilistic image analysis methods for single-synapse analysis of synapse populations in both animal and human brains.

cs.CV↗

arXiv2016

Development of frequency domain multiplexing for the X-ray Integral Field Unit (X-IFU) on the Athena

We are developing the frequency domain multiplexing (FDM) read-out of transition-edge sensor (TES) microcalorimeters for the X-ray Integral Field Unit (X-IFU) instrument on board of the future European X-Ray observatory Athena. The X-IFU instrument consists of an array of $\sim$3840 TESs with a high quantum efficiency ($>$90 \%) and spectral resolution $ΔE$=2.5 eV $@$ 7 keV ($E/ΔE\sim$2800). FDM is currently the baseline readout system for the X-IFU instrument. Using high quality factor LC filters and room temperature electronics developed at SRON and low-noise two stage SQUID amplifiers provided by VTT, we have recently demonstrated good performance with the FDM readout of Mo/Au TES calorimeters with Au/Bi absorbers. An integrated noise equivalent power resolution of about 2.0 eV at 1.7 MHz has been demonstrated with a pixel from a new TES array from NASA/Goddard (GSFC-A2). We have achieved X-ray energy resolutions $\sim$2.5 eV at AC bias frequency at 1.7 MHz in the single pixel read-out. We have also demonstrated for the first time an X-ray energy resolution around 3.0 eV in a 6 pixel FDM read-out with TES array (GSFC-A1). In this paper we report on the single pixel performance of these microcalorimeters under MHz AC bias, and further results of the performance of these pixels under FDM.

astro-ph.IM↗

arXiv2013

The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience

We describe a scalable database cluster for the spatial analysis and annotation of high-throughput brain imaging data, initially for 3-d electron microscopy image stacks, but for time-series and multi-channel data as well. The system was designed primarily for workloads that build connectomes---neural connectivity maps of the brain---using the parallel execution of computer vision algorithms on high-performance compute clusters. These services and open-science data sets are publicly available at http://openconnecto.me. The system design inherits much from NoSQL scale-out and data-intensive computing architectures. We distribute data to cluster nodes by partitioning a spatial index. We direct I/O to different systems---reads to parallel disk arrays and writes to solid-state storage---to avoid I/O interference and maximize throughput. All programming interfaces are RESTful Web services, which are simple and stateless, improving scalability and usability. We include a performance evaluation of the production system, highlighting the effectiveness of spatial data organization.

cs.DC↗

arXiv2011

Proximity Effects and Nonequilibrium Superconductivity in Transition-Edge Sensors

We have recently shown that normal-metal/superconductor (N/S) bilayer TESs (superconducting Transition-Edge Sensors) exhibit weak-link behavior.1 Here we extend our understanding to include TESs with added noise-mitigating normal-metal structures (N structures). We find TESs with added Au structures also exhibit weak-link behavior as evidenced by exponential temperature dependence of the critical current and Josephson-like oscillations of the critical current with applied magnetic field. We explain our results in terms of an effect converse to the longitudinal proximity effect (LoPE)1, the lateral inverse proximity effect (LaiPE), for which the order parameter in the N/S bilayer is reduced due to the neighboring N structures. Resistance and critical current measurements are presented as a function of temperature and magnetic field taken on square Mo/Au bilayer TESs with lengths ranging from 8 to 130 μm with and without added N structures. We observe the inverse proximity effect on the bilayer over in-plane distances many tens of microns and find the transition shifts to lower temperatures scale approximately as the inverse square of the in- plane N-structure separation distance, without appreciable broadening of the transition width. We also present evidence for nonequilbrium superconductivity and estimate a quasiparticle lifetime of 1.8 \times 10-10 s for the bilayer. The LoPE model is also used to explain the increased conductivity at temperatures above the bilayer's steep resistive transition.

cond-mat.supr-con↗

arXiv2009

Longitudinal Proximity Effects in Superconducting Transition-Edge Sensors

We have found experimentally that the critical current of a square superconducting transition-edge sensor (TES) depends exponentially upon the side length L and the square root of the temperature T. As a consequence, the effective transition temperature Tc of the TES is current-dependent and at fixed current scales as 1/L^2. We also have found that the critical current can show clear Fraunhofer-like oscillations in an applied magnetic field, similar to those found in Josephson junctions. The observed behavior has a natural theoretical explanation in terms of longitudinal proximity effects if the TES is regarded as a weak link between superconducting leads. We have observed the proximity effect in these devices over extraordinarily long lengths exceeding 100 um.

cond-mat.supr-con↗