arXiv subjects

Stephen P. Ellner

Publications and source records attributed to Stephen P. Ellner.

6 recordsLinked to original sources

arXiv2020

Generalized Single Index Models and Jensen Effects on Reproduction and Survival

Environmental variability often has substantial impacts on natural populations and communities through its effects on the performance of individuals. Because organisms' responses to environmental conditions are often nonlinear (e.g., decreasing performance on both sides of an optimal temperature), the mean response is often different from the response in the mean environment. Ye et. al. 2020, proposed testing for the presence of such variance effects on individual or population growth rates by estimating the "Jensen Effect", the difference in average growth rates under varying versus fixed environments, in functional single index models for environmental effects on growth. In this paper, we extend this analysis to effect of environmental variance on reproduction and survival, which have count and binary outcomes. In the standard generalized linear models used to analyze such data the direction of the Jensen Effect is tacitly assumed a priori by the model's link function. Here we extend the methods of Ye et. al. 2020 using a generalized single index model to test whether this assumed direction is contradicted by the data. We show that our test has reasonable power under mild alternatives, but requires sample sizes that are larger than are often available. We demonstrate our methods on a long-term time series of plant ground cover on the Idaho steppe.

stat.ME↗

arXiv2015

Goodness of fit in nonlinear dynamics: Misspecified rates or misspecified states?

This paper introduces diagnostic tests for the nature of lack of fit in ordinary differential equation models (ODEs) proposed for data. We present a hierarchy of three possible sources of lack of fit: unaccounted-for stochastic variation, misspecification of functional forms in rate equations, and omission of dynamic variables in the description of the system. We represent lack of fit by allowing a parameter vector to vary over time, and propose generic testing procedures that do not rely on specific alternative models. Instead, different sources for lack of fit are characterized in terms of nonparametric relationships among latent variables. The tests are carried out through a combination of residual bootstrap and permutation methods. We demonstrate the effectiveness of these tests on simulated data and on real data from laboratory ecological experiments and electro-cardiogram data.

stat.ME↗

arXiv2012

Rapid contemporary evolution and clonal food web dynamics

Character evolution that affects ecological community interactions often occurs contemporaneously with temporal changes in population size, potentially altering the very nature of those dynamics. Such eco-evolutionary processes may be most readily explored in systems with short generations and simple genetics. Asexual and cyclically parthenogenetic organisms such as microalgae, cladocerans, and rotifers, which frequently dominate freshwater plankton communities, meet these requirements. Multiple clonal lines can coexist within each species over extended periods, until either fixation occurs or a sexual phase reshuffles the genetic material. When clones differ in traits affecting interspecific interactions, within-species clonal dynamics can have major effects on the population dynamics. We first consider a simple predator-prey system with two prey genotypes, parameterized with data on a well-studied experimental system, and explore how the extent of differences in defense against predation within the prey population determine dynamic stability versus instability of the system. We then explore how increased potential for evolution affects the community dynamics in a more general community model with multiple predator and multiple prey genotypes. These examples illustrate how microevolutionary "details" that enhance or limit the potential for heritable phenotypic change can have significant effects on contemporaneous community-level dynamics and the persistence and coexistence of species.

q-bio.PE↗

arXiv2012

Temporally variable dispersal and demography can accelerate the spread of invading species

We analyze how temporal variability in local demography and dispersal combine to affect the rate of spread of an invading species. Our model combines state-structured local demography (specified by an integral or matrix projection model) with general dispersal distributions that may depend on the state of the individual or its parent, and it allows very general patterns of stationary temporal variation in both local demography and in the frequency and distribution of dispersal distances. We show that expressions for the asymptotic spread rate and its sensitivity to parameters, that have been derived previously for less general models, continue to hold. Using these results, we show that random temporal variability in dispersal can accelerate population spread. Demographic variability can further accelerate spread if it is positively correlated with dispersal variability, for example if high-fecundity years are also years in which juveniles tend to settle further away from their parents. A simple model for the growth and spread of patches of an invasive plant (perennial pepperweed, Lepidium latifolium) illustrates these effects and shows that they can have substantial impacts on the predicted speed of an invasion wave. Temporal variability in dispersal has gotten very little attention in both the theoretical and empirical literatures on invasive species spread. Our results suggest that this needs to change.

q-bio.PE↗

arXiv2006

Effects of rapid prey evolution on predator-prey cycles

We study the qualitative properties of population cycles in a predator-prey system where genetic variability allows contemporary rapid evolution of the prey. Previous numerical studies have found that prey evolution in response to changing predation risk can have major quantitative and qualitative effects on predator-prey cycles, including: (i) large increases in cycle period, (ii) changes in phase relations (so that predator and prey are cycling exactly out of phase, rather than the classical quarter-period phase lag), and (iii) "cryptic" cycles in which total prey density remains nearly constant while predator density and prey traits cycle. Here we focus on a chemostat model motivated by our experimental system [Fussmann et al. 2000,Yoshida et al. 2003] with algae (prey) and rotifers (predators), in which the prey exhibit rapid evolution in their level of defense against predation. We show that the effects of rapid prey evolution are robust and general, and furthermore that they occur in a specific but biologically relevant region of parameter space: when traits that greatly reduce predation risk are relatively cheap (in terms of reductions in other fitness components), when there is coexistence between the two prey types and the predator, and when the interaction between predators and undefended prey alone would produce cycles. Because defense has been shown to be inexpensive, even cost-free, in a number of systems [Andersson and Levin 1999, Gagneux et al. 2006,Yoshida et al. 2004], our discoveries may well be reproduced in other model systems, and in nature. Finally, some of our key results are extended to a general model in which functional forms for the predation rate and prey birth rate are not specified.

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arXiv2004

Evolutionary tradeoff and equilibrium in an aquatic predator-prey system

Due to the conventional distinction between ecological (rapid) and evolutionary (slow)timescales, ecological and population models to date have typically ignored the effects of evolution. Yet the potential for rapid evolutionary change has been recently established and may be critical to understanding how populations adapt to changing environments. In this paper we examine the relationship between ecological and evolutionary dynamics, focusing on a well-studied experimental aquatic predator-prey system (Fussmann et al. 2000; Shertzer et al. 2002; Yoshida et al. 2003). Major properties of predator-prey cycles in this system are determined by ongoing evolutionary dynamics in the prey population. Under some conditions, however, the populations tend to apparently stable steady-state densities. These are the subject of the present paper. We examine a previously developed model for the system, to determine how evolution shapes properties of the equilibria, in particular the number and identity of coexisting prey genotypes. We then apply these results to explore how evolutionary dynamics can shape the responses of the system to "management": externally imposed alterations in conditions. Specifically, we compare the behavior of the system including evolutionary dynamics, with predictions that would be made if the potential for rapid evolutionary change is negelected. Finally, we posit some simple experiments to verify our prediction that evolution can have significant qualitative effects on observed population-level responses to changing conditions.

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