arXiv subjects

Steven G. Murray

Publications and source records attributed to Steven G. Murray.

At least 19 recordsLinked to original sources

arXiv2026

Inferring Cosmology and Astrophysics from the High-redshift 21cm Signal with SKA-Low

The Square Kilometre Array's low frequency telescope (SKA-Low) will enable inference of astrophysical and cosmological parameters from the redshifted 21 cm signal, probing the Cosmic Dawn and Epoch of Reionisation. While the power spectrum is the primary target for initial detection, the inherently non-Gaussian nature of the 21 cm signal, driven by the patchy evolution of ionised regions and spin temperature fluctuations, encodes rich information accessible through higher-order statistics and morphological measurements. Extracting these constraints requires diverse inference tools, encompassing both sophisticated modelling frameworks (analytical, semi-numerical, numerical, and emulators) used to predict the 21 cm signal, and advanced inference techniques (Bayesian, simulation-based, field-level) to connect statistics to the underlying physics. This chapter reviews these tools and explores the constraining power of different statistical probes accessible with SKA-Low, including the power spectrum, statistics beyond order two, moments of the signal distribution, and morphological measures. Combining these complementary statistics is crucial for breaking parameter degeneracies and unveiling the properties of the early Universe. We specifically assess the potential of the initial SKA-Low configuration (AA*) to measure galaxy and IGM properties, demonstrating its capability for early science results. This chapter forms part of a comprehensive set detailing the Epoch of Reionisation and Cosmic Dawn science case for the SKA-Low telescope.

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arXiv2026

21cmEMUv3: a hybrid diffusion-LSTM emulator of 21cmFAST summary observables

We are witnessing a surge in observations of the cosmic dawn (CD) and epoch of reionisation (EoR), driving an increasing demand for fast and robust theoretical interpretation frameworks. In response, machine learning (ML), and emulation in particular, has emerged as a powerful approach to accelerate and enhance inference pipelines. In this work, we present 21cmEMUv3, an emulator trained on 21cmFASTv3 simulations that model both atomically and molecularly cooling galaxies. 21cmEMUv3 is conditioned on $\sigma_8$ and ten astrophysical parameters to produce seven summary observables: (i) the cylindrical 21cm power spectrum (PS), emulated for the first time at such high resolution and accuracy across a wide redshift range of $z \sim$ 6--30; (ii) the spherically-averaged 21cm PS; (iii) the mean neutral fraction of the intergalactic medium (IGM); (iv) the mean 21cm spin temperature; (v) the global 21cm signal; (vi) the ultraviolet (UV) luminosity functions (LFs); and (vii) the Thomson scattering optical depth. Notably, the cylindrical 21cm PS is emulated via score-based diffusion, while the remaining six summaries are emulated via long-short term memory (LSTM) networks, all achieving sub-percent median accuracy. We use the emulator to reinterpret current 21cm PS upper limits from HERA, for the first time using state-of-the-art hydrodynamical simulations to inform priors on star formation inside molecularly cooling galaxies. We find that our inferred soft-band X-ray luminosity per unit star formation rate is consistent with extrapolations of high-mass X-ray binaries to the low-metallicity regimes expected in the first galaxies, excluding values below $10^{39.2}$ erg s$^{-1}M^{-1}_\odot \rm{yr}$ at $95\%$ confidence. Finally, we produce forecasts for the detection of the cosmic 21cm PS with the Square Kilometre Array for different array configurations. The 21cmEMU package is publicly available.

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arXiv2026

The EDGES Analysis Pipeline: Description and Validation

The sky-averaged redshifted 21-cm signal from Cosmic Dawn is expected to provide a unique view of the first compact objects. However, its measurement remains daunting. Difficulties are driven by the large dynamic contrast between the intervening foregrounds and the signal-of-interest, which places extremely high demands on instrumental calibration and data quality measures. The ongoing debate within the field concerning the evidence of a potential first detection by the EDGES experiment highlights the need for a more robust set of analysis methods and tools that are reliable and accessible. In this paper, we detail for the first time the precise calibration and analysis methodology adopted in previous EDGES data releases. These methods are presented in the context of a new open-source end-to-end analysis and simulation package for 21-cm global signal experiments that both formalizes these methods and provides general tools for the broader community. Finally, we describe the raw data used in previous EDGES papers and release these data publicly for extended scrutiny.

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arXiv2025

First Results from HERA Phase II

We report the first upper limits on the power spectrum of 21-cm fluctuations during the Epoch of Reionization and Cosmic Dawn from Phase II of the Hydrogen Epoch of Reionization Array (HERA) experiment. HERA Phase II constitutes several significant improvements in the signal chain compared to Phase I, most notably resulting in expanded frequency bandwidth, from 50-250 MHz. In these first upper limits, we investigate a small two-week subset of the available Phase II observations, with a focus on identifying new systematic characteristics of the instrument, and establishing an analysis pipeline to account for them. We report 2$\sigma$ upper limits in eight spectral bands, spanning $5.6 \leq z \leq 24.4$ that are consistent with thermal noise at the $2\sigma$ level for $k \gtrsim 0.6-0.9 h{\rm Mpc}^{-1}$ (band dependent). Our tightest limit during Cosmic Dawn ($z>12$) is $1.13\times 10^6 {\rm mK}^2$ at ($k=0.55 h{\rm Mpc}^{-1}, z=16.78$), and during the EoR ($5.5<z<12$) it is $1.78\times 10^3 {\rm mK}^2$ at ($k=0.70 h{\rm Mpc}^{-1}, z=7.05$). We find that mutual coupling has become our dominant systematic, leaking foreground power that strongly contaminates the low-$k$ modes, resulting in the loss of modes from $k=0.35-0.55$ compared to Phase I data.

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arXiv2025

Exploring One-point Statistics in HERA Phase I Data: Effects of Foregrounds and Systematics on Measuring One-Point Statistics

Measuring one-point statistics in redshifted 21 cm intensity maps offers an opportunity to explore non-Gaussian features of the early universe. We assess the impact of instrumental effects on measurements made with the Hydrogen Epoch of Reionization Array (HERA) by forward modeling observational and simulation data. Using HERA Phase I observations over 94 nights, we examine the second (m2, variance) and third (m3) moments of images. We employ the DAYENU-filtering method for foreground removal and reduce simulated foreground residuals to 10% of the 21 cm signal residuals. In noiseless cosmological simulations, the amplitudes of one-point statistics measurements are significantly reduced by the instrument response and further reduced by wedge-filtering. Analyses with wedge-filtered observational data, along with expected noise simulations, show that systematics alter the probability distribution of the map pixels. Likelihood analysis based on the observational data shows m2 measurements disfavor the cold reionization model characterized by inefficient X-ray heating, in line with other power spectra measurements. Small signals in m3 due to the instrument response of the Phase I observation and wedge-filtering make it challenging to use these non-Gaussian statistics to explore model parameters. Forecasts with the full HERA array predict high signal-to-noise ratios for m2, m3, and S3 assuming no foregrounds, but wedge-filtering drastically reduces these ratios. This work demonstrates conclusively that a comprehensive understanding of instrumental effects on m2 and m3 is essential for their use as a cosmological probe, given their dependence on the underlying model.

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arXiv2025

EDGES-3: Instrument Design and Commissioning

EDGES-3 is the third iteration of the EDGES experiment, designed to measure the predicted global absorption feature in the radio spectrum produced by neutral hydrogen gas at cosmic dawn, a critical observation determining when and how the first stars populated the universe. The EDGES-3 instrument has been redesigned to include both the analog and digital electronics within the antenna, allowing for in-situ calibration and removal of the lossy balun found in EDGES-2. EDGES-3 has been on multiple deployments in the past 4 years; to Oregon, Devon Island, Adak Island, and is currently installed and taking data in the outback of Western Australia. This paper provides an accounting of the challenges inherent in the detection of the global, cosmological 21-cm signal, the strategies EDGES employs to mitigate each of these challenges, a description of the instrument, and a report on the Western Australia deployment along with observational data.

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arXiv2025

Sample Variance Denoising in Cylindrical 21-cm Power Spectra

State-of-the-art simulations of reionisation-era 21-cm signal have limited volumes, generally orders of magnitude smaller than observations. Consequently, the Fourier modes in common between simulation and observation have limited overlap, especially in cylindrical (2D) k-space that is natural for 21-cm interferometry. This makes sample variance (i.e. the deviation of the simulated sample from the population mean due to finite box size) a potential issue when interpreting upcoming 21-cm observations. We introduce \texttt{21cmPSDenoiser}, a score-based diffusion model that can be applied to a single, forward-modelled realisation of the 21-cm 2D power spectrum (PS), predicting the corresponding \textit{population mean} on-the-fly during Bayesian inference. Individual samples of 2D Fourier amplitudes of wave modes relevant to current 21-cm observations can deviate from the mean by over 50\% for 300 cMpc simulations, even when only considering stochasticity due to sampling of Gaussian initial conditions. \texttt{21cmPSDenoiser} reduces this deviation by an order of magnitude, outperforming current state-of-the-art sample variance mitigation techniques like Fixing \& Pairing by a factor of few at almost no additional computational cost ($\sim6$s per PS). Unlike emulators, the denoiser is not tied to a particular model or simulator since its input is a (model-agnostic) realisation of the 2D 21-cm PS. Indeed, we confirm that it generalises to PS produced with a different 21-cm simulator than those on which it was trained. To quantify the improvement in parameter recovery, we simulate a 21-cm PS detection by the Hydrogen Epoch of Reionization Arrays (HERA) and run different inference pipelines corresponding to commonly-used approximations. We find that using \texttt{21cmPSDenoiser} in the inference pipeline outperforms other approaches, yielding an unbiased posterior that is 50\% narrower.

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arXiv2025

A Bayesian approach to modelling spectrometer data chromaticity corrected using beam factors -- II. Model priors and posterior odds

The reliable detection of the global 21-cm signal, a key tracer of Cosmic Dawn and the Epoch of Reionization, requires meticulous data modelling and robust statistical frameworks for model validation and comparison. In Paper I of this series, we presented the Beam-Factor-based Chromaticity Correction (BFCC) model for spectrometer data processed using BFCC to suppress instrumentally induced spectral structure. We demonstrated that the BFCC model, with complexity calibrated by Bayes factor-based model comparison (BFBMC), enables unbiased recovery of a 21-cm signal consistent with the one reported by EDGES from simulated data. Here, we extend the evaluation of the BFCC model to lower amplitude 21-cm signal scenarios where deriving reliable conclusions about a model's capacity to recover unbiased 21-cm signal estimates using BFBMC is more challenging. Using realistic simulations of chromaticity-corrected EDGES-low spectrometer data, we evaluate three signal amplitude regimes -- null, moderate, and high. We then conduct a Bayesian comparison between the BFCC model and three alternative models previously applied to 21-cm signal estimation from EDGES data. To mitigate biases introduced by systematics in the 21-cm signal model fit, we incorporate the Bayesian Null-Test-Evidence-Ratio (BaNTER) validation framework and implement a Bayesian inference workflow based on posterior odds of the validated models. We demonstrate that, unlike BFBMC alone, this approach consistently recovers 21-cm signal estimates that align with the true signal across all amplitude regimes, advancing robust global 21-cm signal detection methodologies.

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arXiv2025

fftvis: A Non-Uniform Fast Fourier Transform Based Interferometric Visibility Simulator

The detection and characterization of the 21cm signal from the Epoch of Reionization (EoR) demands extraordinary precision in radio interferometric observations and analysis. For modern low-frequency arrays, achieving the dynamic range necessary to detect this signal requires simulation frameworks to validate analysis techniques and characterize systematic effects. However, the computational expense of direct visibility calculations grows rapidly with sky model complexity and array size, posing a potential bottleneck for scalable forward modeling. In this paper, we present fftvis, a high-performance visibility simulator built on the Flatiron Non-Uniform Fast-Fourier Transform (finufft) algorithm. We show that fftvis matches the well-validated matvis simulator to near numerical precision while delivering substantial runtime reductions, up to two orders of magnitude for dense, many-element arrays. We provide a detailed description of the fftvis algorithm and benchmark its computational performance, memory footprint, and numerical accuracy against matvis, including a validation study against analytic solutions for diffuse sky models. We further assess the utility of fftvis in validating 21cm analysis pipelines through a study of the dynamic range in simulated delay and fringe-rate spectra. Our results establish fftvis as a fast, precise, and scalable simulation tool for 21cm cosmology experiments, enabling end-to-end validation of analysis pipelines.

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arXiv2025

A general Bayesian model-validation framework based on null-test evidence ratios, with an example application to global 21-cm cosmology

Comparing composite models for multi-component observational data is a prevalent scientific challenge. When fitting composite models, there exists the potential for systematics from a poor fit of one model component to be absorbed by another, resulting in the composite model providing an accurate fit to the data in aggregate but yielding biased a posteriori estimates for individual components. We begin by defining a classification scheme for composite model comparison scenarios, identifying two categories: category I, where models with accurate and predictive components are separable through Bayesian comparison of the unvalidated composite models, and category II, where models with accurate and predictive components may not be separable due to interactions between components, leading to spurious detections or biased signal estimation. To address the limitations of category II model comparisons, we introduce the Bayesian Null Test Evidence Ratio-based (BaNTER) validation framework. Applying this classification scheme and BaNTER to a composite model comparison problem in 21-cm cosmology, where minor systematics from imperfect foreground modelling can bias global 21-cm signal recovery, we validate six composite models using mock data. We show that incorporating BaNTER alongside Bayes-factor-based comparison reliably ensures unbiased inferences of the signal of interest across both categories, positioning BaNTER as a valuable addition to Bayesian inference workflows with potential applications across diverse fields.

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arXiv2024

Impacts and Statistical Mitigation of Missing Data on the 21cm Power Spectrum: A Case Study with the Hydrogen Epoch of Reionization Array

The precise characterization and mitigation of systematic effects is one of the biggest roadblocks impeding the detection of the fluctuations of cosmological 21cm signals. Missing data in radio cosmological experiments, often due to radio frequency interference (RFI), poses a particular challenge to power spectrum analysis as it could lead to the ringing of bright foreground modes in Fourier space, heavily contaminating the cosmological signals. Here we show that the problem of missing data becomes even more arduous in the presence of systematic effects. Using a realistic numerical simulation, we demonstrate that partially flagged data combined with systematic effects can introduce significant foreground ringing. We show that such an effect can be mitigated through inpainting the missing data. We present a rigorous statistical framework that incorporates the process of inpainting missing data into a quadratic estimator of the 21cm power spectrum. Under this framework, the uncertainties associated with our inpainting method and its impact on power spectrum statistics can be understood. These results are applied to the latest Phase II observations taken by the Hydrogen Epoch of Reionization Array, forming a crucial component in power spectrum analyses as we move toward detecting 21cm signals in the ever more noisy RFI environment.

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arXiv2024

The EDGES measurement disfavors an excess radio background during the cosmic dawn

In 2018 the EDGES experiment claimed the first detection of the global cosmic 21cm signal, which featured an absorption trough centered around $z \sim 17$ with a depth of approximately -500mK. This amplitude is deeper than the standard prediction (in which the radio background is determined by the cosmic microwave background) by a factor of two and potentially hints at the existence of a radio background excess. While this result was obtained by fitting the data with a phenomenological flattened-Gaussian shape for the cosmological signal, here we develop a physical model for the inhomogeneous radio background sourced by the first galaxies hosting population III stars. Star formation in these galaxies is quenched at lower redshifts due to various feedback mechanisms, so they serve as a natural candidate for the excess radio background hinted by EDGES, without violating present day measurements by ARCADE2. We forward-model the EDGES sky temperature data, jointly sampling our physical model for the cosmic signal, a foreground model, and residual calibration errors. We compare the Bayesian evidences obtained by varying the complexity and prior ranges for the systematics. We find that the data is best explained by a model with seven log-polynomial foreground terms, and that it requires calibration residuals. Interestingly, the presence of a cosmic 21cm signal with a non-standard depth is decisively disfavored. This is contrary to previous EDGES analysis in the context of extra radio background models, serving as a caution against using a ''pseudo-likelihood'' built on a model (flattened Gaussian) that is different from the one being used for inference. We make our simulation code and associated emulator publicly-available.

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arXiv2024

Direct Optimal Mapping Image Power Spectrum and its Window Functions

The key to detecting neutral hydrogen during the epoch of reionization (EoR) is to separate the cosmological signal from the dominating foreground radiation. We developed direct optimal mapping (DOM) to map interferometric visibilities; it contains only linear operations, with full knowledge of point spread functions from visibilities to images. Here, we demonstrate a fast Fourier transform-based image power spectrum and its window functions computed from the DOM images. We use noiseless simulation, based on the Hydrogen Epoch of Reionization Array Phase I configuration, to study the image power spectrum properties. The window functions show $<10^{-11}$ of the integrated power leaks from the foreground-dominated region into the EoR window; the 2D and 1D power spectra also verify the separation between the foregrounds and the EoR.

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arXiv2024

21cmSense v2: A modular, open-source 21cm sensitivity calculator

The 21cm line of neutral hydrogen is a powerful probe of the high-redshift universe (Cosmic Dawn and the Epoch of Reionization), with an unprecedented potential to inform us about key processes of early galaxy formation, the first stars and even cosmology and structure formation, via intensity mapping. It is the subject of a number of current and upcoming low-frequency radio experiments. This paper presents 21cmSense v2.0, which is a Python package that provides a modular framework for calculating the sensitivity of these experiments, in order to enhance the process of their design and forecasting their power for parameter inference. Version 2.0 of 21cmSense has been re-written from the ground up to be more modular and extensible than its venerable predecessor (Pober et al., 2013, 2014), and to provide a more user-friendly interface. The package is freely available both to use and contribute towards at https://github.com/rasg-affiliates/21cmSense.

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arXiv2024

A demonstration of the effect of fringe-rate filtering in the Hydrogen Epoch of Reionization Array delay power spectrum pipeline

Radio interferometers targeting the 21cm brightness temperature fluctuations at high redshift are subject to systematic effects that operate over a range of different timescales. These can be isolated by designing appropriate Fourier filters that operate in fringe-rate (FR) space, the Fourier pair of local sidereal time (LST). Applications of FR filtering include separating effects that are correlated with the rotating sky vs. those relative to the ground, down-weighting emission in the primary beam sidelobes, and suppressing noise. FR filtering causes the noise contributions to the visibility data to become correlated in time however, making interpretation of subsequent averaging and error estimation steps more subtle. In this paper, we describe fringe rate filters that are implemented using discrete prolate spheroidal sequences, and designed for two different purposes -- beam sidelobe/horizon suppression (the `mainlobe' filter), and ground-locked systematics removal (the `notch' filter). We apply these to simulated data, and study how their properties affect visibilities and power spectra generated from the simulations. Included is an introduction to fringe-rate filtering and a demonstration of fringe-rate filters applied to simple situations to aid understanding.

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arXiv2024

Hydrogen Epoch of Reionization Array (HERA) Phase II Deployment and Commissioning

This paper presents the design and deployment of the Hydrogen Epoch of Reionization Array (HERA) phase II system. HERA is designed as a staged experiment targeting 21 cm emission measurements of the Epoch of Reionization. First results from the phase I array are published as of early 2022, and deployment of the phase II system is nearing completion. We describe the design of the phase II system and discuss progress on commissioning and future upgrades. As HERA is a designated Square Kilometer Array (SKA) pathfinder instrument, we also show a number of "case studies" that investigate systematics seen while commissioning the phase II system, which may be of use in the design and operation of future arrays. Common pathologies are likely to manifest in similar ways across instruments, and many of these sources of contamination can be mitigated once the source is identified.

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arXiv2023

matvis: A matrix-based visibility simulator for fast forward modelling of many-element 21 cm arrays

Detection of the faint 21 cm line emission from the Cosmic Dawn and Epoch of Reionisation will require not only exquisite control over instrumental calibration and systematics to achieve the necessary dynamic range of observations but also validation of analysis techniques to demonstrate their statistical properties and signal loss characteristics. A key ingredient in achieving this is the ability to perform high-fidelity simulations of the kinds of data that are produced by the large, many-element, radio interferometric arrays that have been purpose-built for these studies. The large scale of these arrays presents a computational challenge, as one must simulate a detailed sky and instrumental model across many hundreds of frequency channels, thousands of time samples, and tens of thousands of baselines for arrays with hundreds of antennas. In this paper, we present a fast matrix-based method for simulating radio interferometric measurements (visibilities) at the necessary scale. We achieve this through judicious use of primary beam interpolation, fast approximations for coordinate transforms, and a vectorised outer product to expand per-antenna quantities to per-baseline visibilities, coupled with standard parallelisation techniques. We validate the results of this method, implemented in the publicly-available matvis code, against a high-precision reference simulator, and explore its computational scaling on a variety of problems.

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arXiv2023

Bayesian estimation of cross-coupling and reflection systematics in 21cm array visibility data

Observations with radio arrays that target the 21-cm signal originating from the early Universe suffer from a variety of systematic effects. An important class of these are reflections and spurious couplings between antennas. We apply a Hamiltonian Monte Carlo sampler to the modelling and mitigation of these systematics in simulated Hydrogen Epoch of Reionisation Array (HERA) data. This method allows us to form statistical uncertainty estimates for both our models and the recovered visibilities, which is an important ingredient in establishing robust upper limits on the Epoch of Reionisation (EoR) power spectrum. In cases where the noise is large compared to the EoR signal, this approach can constrain the systematics well enough to mitigate them down to the noise level for both systematics studied. Incoherently averaging the recovered power spectra can further reduce the noise and improve recovery. Where the noise level is lower than the EoR, our modelling can mitigate the majority of the reflections and coupling with there being only a minor level of residual systematics. Our approach performs similarly to existing filtering/fitting techniques used in the HERA pipeline, but with the added benefit of rigorously propagating uncertainties. In all cases it does not significantly attenuate the underlying signal.

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