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Steven W. Flavell

Publications and source records attributed to Steven W. Flavell.

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MIMIC-MJX: Neuromechanical Emulation of Animal Behavior

The primary output of the nervous system is movement and behavior. While recent advances have democratized pose tracking during complex behavior, kinematic trajectories alone provide only indirect access to the underlying control processes. Here we present MIMIC-MJX, a framework for learning biomechanically grounded neural control policies from kinematics. MIMIC-MJX provides a platform for modeling the generative process of motor control by training neural controllers that learn to actuate biomechanical animal models in physics simulation to reproduce real kinematic trajectories. We demonstrate that our implementation is accurate, fast, and generalizable to diverse animal body models, and that it can be trained with modest amounts of motion data. MIMIC-MJX can be used to model motor control policies and simulate behavioral experiments, illustrating its potential as an integrative modeling framework for neuroscience.

q-bio.NC

Schrodinger dynamics and Berry phase of undulatory locomotion

Spectral mode representations play an essential role in various areas of physics, from quantum mechanics to fluid turbulence, but they are not yet extensively used to characterize and describe the behavioral dynamics of living systems. Here, we show that mode-based linear models inferred from experimental live-imaging data can provide an accurate low-dimensional description of undulatory locomotion in worms, centipedes, robots, and snakes. By incorporating physical symmetries and known biological constraints into the dynamical model, we find that the shape dynamics are generically governed by Schrodinger equations in mode space. The eigenstates of the effective biophysical Hamiltonians and their adiabatic variations enable the efficient classification and differentiation of locomotion behaviors in natural, simulated, and robotic organisms using Grassmann distances and Berry phases. While our analysis focuses on a widely studied class of biophysical locomotion phenomena, the underlying approach generalizes to other physical or living systems that permit a mode representation subject to geometric shape constraints.

physics.bio-ph