arXiv subjects

Stuart M. Shieber

Publications and source records attributed to Stuart M. Shieber.

At least 19 recordsLinked to original sources

arXiv2026

string2string Studio: An Interactive, In-Browser Platform for String-to-String Algorithms

We present string2string Studio, an interactive in-browser platform for string-to-string analysis across natural language processing, computational biology, and the digital humanities. The system integrates six main modules (alignment, distance, similarity, search, generation metrics, and BLAST homology search), operating at character, word, token, line, and residue levels. Its C++-based algorithms compile to WebAssembly, so core operations run locally by default without any installation or data upload. The interface reports scores with their "evidence" (alignments, edit paths, metric matches, search hits, and homology traces), making methods inspectable, debuggable, and comparable on shared inputs. Internal benchmarks show speedups of up to 2,500x over the Python predecessor, faster global/local alignment than a general-purpose native C aligner, and exact agreement with independent references under declared settings. For homology search, the scoped client-side blastn path closely matches NCBI BLAST+ rankings and statistics under matched parameters. A curated showcase and Learn mode present canonical algorithms and metrics as reusable demonstrations. string2string Studio is open-source and freely available at string2string.org.

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arXiv2023

string2string: A Modern Python Library for String-to-String Algorithms

We introduce string2string, an open-source library that offers a comprehensive suite of efficient algorithms for a broad range of string-to-string problems. It includes traditional algorithmic solutions as well as recent advanced neural approaches to tackle various problems in string alignment, distance measurement, lexical and semantic search, and similarity analysis -- along with several helpful visualization tools and metrics to facilitate the interpretation and analysis of these methods. Notable algorithms featured in the library include the Smith-Waterman algorithm for pairwise local alignment, the Hirschberg algorithm for global alignment, the Wagner-Fisher algorithm for edit distance, BARTScore and BERTScore for similarity analysis, the Knuth-Morris-Pratt algorithm for lexical search, and Faiss for semantic search. Besides, it wraps existing efficient and widely-used implementations of certain frameworks and metrics, such as sacreBLEU and ROUGE, whenever it is appropriate and suitable. Overall, the library aims to provide extensive coverage and increased flexibility in comparison to existing libraries for strings. It can be used for many downstream applications, tasks, and problems in natural-language processing, bioinformatics, and computational social sciences. It is implemented in Python, easily installable via pip, and accessible through a simple API. Source code, documentation, and tutorials are all available on our GitHub page: https://github.com/stanfordnlp/string2string.

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arXiv2022

The Harvard USPTO Patent Dataset: A Large-Scale, Well-Structured, and Multi-Purpose Corpus of Patent Applications

Innovation is a major driver of economic and social development, and information about many kinds of innovation is embedded in semi-structured data from patents and patent applications. Although the impact and novelty of innovations expressed in patent data are difficult to measure through traditional means, ML offers a promising set of techniques for evaluating novelty, summarizing contributions, and embedding semantics. In this paper, we introduce the Harvard USPTO Patent Dataset (HUPD), a large-scale, well-structured, and multi-purpose corpus of English-language patent applications filed to the United States Patent and Trademark Office (USPTO) between 2004 and 2018. With more than 4.5 million patent documents, HUPD is two to three times larger than comparable corpora. Unlike previously proposed patent datasets in NLP, HUPD contains the inventor-submitted versions of patent applications--not the final versions of granted patents--thereby allowing us to study patentability at the time of filing using NLP methods for the first time. It is also novel in its inclusion of rich structured metadata alongside the text of patent filings: By providing each application's metadata along with all of its text fields, the dataset enables researchers to perform new sets of NLP tasks that leverage variation in structured covariates. As a case study on the types of research HUPD makes possible, we introduce a new task to the NLP community--namely, binary classification of patent decisions. We additionally show the structured metadata provided in the dataset enables us to conduct explicit studies of concept shifts for this task. Finally, we demonstrate how HUPD can be used for three additional tasks: multi-class classification of patent subject areas, language modeling, and summarization.

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arXiv2019

Memory-Augmented Recurrent Neural Networks Can Learn Generalized Dyck Languages

We introduce three memory-augmented Recurrent Neural Networks (MARNNs) and explore their capabilities on a series of simple language modeling tasks whose solutions require stack-based mechanisms. We provide the first demonstration of neural networks recognizing the generalized Dyck languages, which express the core of what it means to be a language with hierarchical structure. Our memory-augmented architectures are easy to train in an end-to-end fashion and can learn the Dyck languages over as many as six parenthesis-pairs, in addition to two deterministic palindrome languages and the string-reversal transduction task, by emulating pushdown automata. Our experiments highlight the increased modeling capacity of memory-augmented models over simple RNNs, while inflecting our understanding of the limitations of these models.

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arXiv2019

Don't Take the Premise for Granted: Mitigating Artifacts in Natural Language Inference

Natural Language Inference (NLI) datasets often contain hypothesis-only biases---artifacts that allow models to achieve non-trivial performance without learning whether a premise entails a hypothesis. We propose two probabilistic methods to build models that are more robust to such biases and better transfer across datasets. In contrast to standard approaches to NLI, our methods predict the probability of a premise given a hypothesis and NLI label, discouraging models from ignoring the premise. We evaluate our methods on synthetic and existing NLI datasets by training on datasets containing biases and testing on datasets containing no (or different) hypothesis-only biases. Our results indicate that these methods can make NLI models more robust to dataset-specific artifacts, transferring better than a baseline architecture in 9 out of 12 NLI datasets. Additionally, we provide an extensive analysis of the interplay of our methods with known biases in NLI datasets, as well as the effects of encouraging models to ignore biases and fine-tuning on target datasets.

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arXiv2019

On Adversarial Removal of Hypothesis-only Bias in Natural Language Inference

Popular Natural Language Inference (NLI) datasets have been shown to be tainted by hypothesis-only biases. Adversarial learning may help models ignore sensitive biases and spurious correlations in data. We evaluate whether adversarial learning can be used in NLI to encourage models to learn representations free of hypothesis-only biases. Our analyses indicate that the representations learned via adversarial learning may be less biased, with only small drops in NLI accuracy.

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arXiv2019

Learning Neural Templates for Text Generation

While neural, encoder-decoder models have had significant empirical success in text generation, there remain several unaddressed problems with this style of generation. Encoder-decoder models are largely (a) uninterpretable, and (b) difficult to control in terms of their phrasing or content. This work proposes a neural generation system using a hidden semi-markov model (HSMM) decoder, which learns latent, discrete templates jointly with learning to generate. We show that this model learns useful templates, and that these templates make generation both more interpretable and controllable. Furthermore, we show that this approach scales to real data sets and achieves strong performance nearing that of encoder-decoder text generation models.

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arXiv2019

LSTM Networks Can Perform Dynamic Counting

In this paper, we systematically assess the ability of standard recurrent networks to perform dynamic counting and to encode hierarchical representations. All the neural models in our experiments are designed to be small-sized networks both to prevent them from memorizing the training sets and to visualize and interpret their behaviour at test time. Our results demonstrate that the Long Short-Term Memory (LSTM) networks can learn to recognize the well-balanced parenthesis language (Dyck-$1$) and the shuffles of multiple Dyck-$1$ languages, each defined over different parenthesis-pairs, by emulating simple real-time $k$-counter machines. To the best of our knowledge, this work is the first study to introduce the shuffle languages to analyze the computational power of neural networks. We also show that a single-layer LSTM with only one hidden unit is practically sufficient for recognizing the Dyck-$1$ language. However, none of our recurrent networks was able to yield a good performance on the Dyck-$2$ language learning task, which requires a model to have a stack-like mechanism for recognition.

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arXiv2018

On Evaluating the Generalization of LSTM Models in Formal Languages

Recurrent Neural Networks (RNNs) are theoretically Turing-complete and established themselves as a dominant model for language processing. Yet, there still remains an uncertainty regarding their language learning capabilities. In this paper, we empirically evaluate the inductive learning capabilities of Long Short-Term Memory networks, a popular extension of simple RNNs, to learn simple formal languages, in particular $a^nb^n$, $a^nb^nc^n$, and $a^nb^nc^nd^n$. We investigate the influence of various aspects of learning, such as training data regimes and model capacity, on the generalization to unobserved samples. We find striking differences in model performances under different training settings and highlight the need for careful analysis and assessment when making claims about the learning capabilities of neural network models.

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arXiv2017

Adapting Sequence Models for Sentence Correction

In a controlled experiment of sequence-to-sequence approaches for the task of sentence correction, we find that character-based models are generally more effective than word-based models and models that encode subword information via convolutions, and that modeling the output data as a series of diffs improves effectiveness over standard approaches. Our strongest sequence-to-sequence model improves over our strongest phrase-based statistical machine translation model, with access to the same data, by 6 M2 (0.5 GLEU) points. Additionally, in the data environment of the standard CoNLL-2014 setup, we demonstrate that modeling (and tuning against) diffs yields similar or better M2 scores with simpler models and/or significantly less data than previous sequence-to-sequence approaches.

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arXiv2017

Challenges in Data-to-Document Generation

Recent neural models have shown significant progress on the problem of generating short descriptive texts conditioned on a small number of database records. In this work, we suggest a slightly more difficult data-to-text generation task, and investigate how effective current approaches are on this task. In particular, we introduce a new, large-scale corpus of data records paired with descriptive documents, propose a series of extractive evaluation methods for analyzing performance, and obtain baseline results using current neural generation methods. Experiments show that these models produce fluent text, but fail to convincingly approximate human-generated documents. Moreover, even templated baselines exceed the performance of these neural models on some metrics, though copy- and reconstruction-based extensions lead to noticeable improvements.

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arXiv2016

Word Ordering Without Syntax

Recent work on word ordering has argued that syntactic structure is important, or even required, for effectively recovering the order of a sentence. We find that, in fact, an n-gram language model with a simple heuristic gives strong results on this task. Furthermore, we show that a long short-term memory (LSTM) language model is even more effective at recovering order, with our basic model outperforming a state-of-the-art syntactic model by 11.5 BLEU points. Additional data and larger beams yield further gains, at the expense of training and search time.

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arXiv2016

Sentence-Level Grammatical Error Identification as Sequence-to-Sequence Correction

We demonstrate that an attention-based encoder-decoder model can be used for sentence-level grammatical error identification for the Automated Evaluation of Scientific Writing (AESW) Shared Task 2016. The attention-based encoder-decoder models can be used for the generation of corrections, in addition to error identification, which is of interest for certain end-user applications. We show that a character-based encoder-decoder model is particularly effective, outperforming other results on the AESW Shared Task on its own, and showing gains over a word-based counterpart. Our final model--a combination of three character-based encoder-decoder models, one word-based encoder-decoder model, and a sentence-level CNN--is the highest performing system on the AESW 2016 binary prediction Shared Task.

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arXiv2016

Learning Global Features for Coreference Resolution

There is compelling evidence that coreference prediction would benefit from modeling global information about entity-clusters. Yet, state-of-the-art performance can be achieved with systems treating each mention prediction independently, which we attribute to the inherent difficulty of crafting informative cluster-level features. We instead propose to use recurrent neural networks (RNNs) to learn latent, global representations of entity clusters directly from their mentions. We show that such representations are especially useful for the prediction of pronominal mentions, and can be incorporated into an end-to-end coreference system that outperforms the state of the art without requiring any additional search.

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arXiv2011

Recognizing Uncertainty in Speech

We address the problem of inferring a speaker's level of certainty based on prosodic information in the speech signal, which has application in speech-based dialogue systems. We show that using phrase-level prosodic features centered around the phrases causing uncertainty, in addition to utterance-level prosodic features, improves our model's level of certainty classification. In addition, our models can be used to predict which phrase a person is uncertain about. These results rely on a novel method for eliciting utterances of varying levels of certainty that allows us to compare the utility of contextually-based feature sets. We elicit level of certainty ratings from both the speakers themselves and a panel of listeners, finding that there is often a mismatch between speakers' internal states and their perceived states, and highlighting the importance of this distinction.

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arXiv1995

Ellipsis and Higher-Order Unification

We present a new method for characterizing the interpretive possibilities generated by elliptical constructions in natural language. Unlike previous analyses, which postulate ambiguity of interpretation or derivation in the full clause source of the ellipsis, our analysis requires no such hidden ambiguity. Further, the analysis follows relatively directly from an abstract statement of the ellipsis interpretation problem. It predicts correctly a wide range of interactions between ellipsis and other semantic phenomena such as quantifier scope and bound anaphora. Finally, although the analysis itself is stated nonprocedurally, it admits of a direct computational method for generating interpretations.

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arXiv1994

Restricting the Weak-Generative Capacity of Synchronous Tree-Adjoining Grammars

The formalism of synchronous tree-adjoining grammars, a variant of standard tree-adjoining grammars (TAG), was intended to allow the use of TAGs for language transduction in addition to language specification. In previous work, the definition of the transduction relation defined by a synchronous TAG was given by appeal to an iterative rewriting process. The rewriting definition of derivation is problematic in that it greatly extends the expressivity of the formalism and makes the design of parsing algorithms difficult if not impossible. We introduce a simple, natural definition of synchronous tree-adjoining derivation, based on isomorphisms between standard tree-adjoining derivations, that avoids the expressivity and implementability problems of the original rewriting definition. The decrease in expressivity, which would otherwise make the method unusable, is offset by the incorporation of an alternative definition of standard tree-adjoining derivation, previously proposed for completely separate reasons, thereby making it practical to entertain using the natural definition of synchronous derivation. Nonetheless, some remaining problematic cases call for yet more flexibility in the definition; the isomorphism requirement may have to be relaxed. It remains for future research to tune the exact requirements on the allowable mappings.

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arXiv1994

Principles and Implementation of Deductive Parsing

We present a system for generating parsers based directly on the metaphor of parsing as deduction. Parsing algorithms can be represented directly as deduction systems, and a single deduction engine can interpret such deduction systems so as to implement the corresponding parser. The method generalizes easily to parsers for augmented phrase structure formalisms, such as definite-clause grammars and other logic grammar formalisms, and has been used for rapid prototyping of parsing algorithms for a variety of formalisms including variants of tree-adjoining grammars, categorial grammars, and lexicalized context-free grammars.

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