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Su-Chan Park

Publications and source records attributed to Su-Chan Park.

50 records · Page 3Linked to original sources

Evolution in random fitness landscapes: the infinite sites model

We consider the evolution of an asexually reproducing population in an uncorrelated random fitness landscape in the limit of infinite genome size, which implies that each mutation generates a new fitness value drawn from a probability distribution $g(w)$. This is the finite population version of Kingman's house of cards model [J.F.C. Kingman, \textit{J. Appl. Probab.} \textbf{15}, 1 (1978)]. In contrast to Kingman's work, the focus here is on unbounded distributions $g(w)$ which lead to an indefinite growth of the population fitness. The model is solved analytically in the limit of infinite population size $N \to \infty$ and simulated numerically for finite $N$. When the genome-wide mutation probability $U$ is small, the long time behavior of the model reduces to a point process of fixation events, which is referred to as a \textit{diluted record process} (DRP). The DRP is similar to the standard record process except that a new record candidate (a number that exceeds all previous entries in the sequence) is accepted only with a certain probability that depends on the values of the current record and the candidate. We develop a systematic analytic approximation scheme for the DRP. At finite $U$ the fitness frequency distribution of the population decomposes into a stationary part due to mutations and a traveling wave component due to selection, which is shown to imply a reduction of the mean fitness by a factor of $1-U$ compared to the $U \to 0$ limit.

q-bio.PE↗

Nonequilibrium Phase Transitions into Absorbing States: Focused around the pair contact process with diffusion

Systems with absorbing (trapped) states may exhibit a nonequilibrium phase transition from a noise-free inactive phase into an ever-lasting active phase. We briefly review the absorbing critical phenomena and universality classes, and discuss over the controversial issues on the pair contact process with diffusion (PCPD). Two different approaches are proposed to clarify its universality issue, which unveil strong evidences that the PCPD belongs to a new universality class other than the directed percolation class.

cond-mat.stat-mech↗

Nontrivial critical crossover between directed percolation models: Effect of infinitely many absorbing states

At non-equilibrium phase transitions into absorbing (trapped) states, it is well known that the directed percolation (DP) critical scaling is shared by two classes of models with a single (S) absorbing state and with infinitely many (IM) absorbing states. We study the crossover behavior in one dimension, arising from a considerable reduction of the number of absorbing states (typically from the IM-type to the S-type DP models), by following two different (excitatory or inhibitory) routes which make the auxiliary field density abruptly jump at the crossover. Along the excitatory route, the system becomes overly activated even for an infinitesimal perturbation and its crossover becomes discontinuous. Along the inhibitory route, we find continuous crossover with the universal crossover exponent $ϕ\simeq 1.78(6)$, which is argued to be equal to $ν_\|$, the relaxation time exponent of the DP universality class on a general footing. This conjecture is also confirmed in the case of the directed Ising (parity-conserving) class. Finally, we discuss the effect of diffusion to the IM-type models and suggest an argument why diffusive models with some hybrid-type reactions should belong to the DP class.

cond-mat.stat-mech↗

Crossover from the pair contact process with diffusion to directed percolation

Crossover behaviors from the pair contact process with diffusion (PCPD) and the driven PCPD (DPCPD) to the directed percolation (DP) are studied in one dimension by introducing a single particle annihilation/branching dynamics. The crossover exponents $ϕ$ are estimated numerically as $1/ϕ\simeq 0.58\pm0.03$ for the PCPD and $1/ϕ\simeq 0.49 \pm 0.02$ for the DPCPD. Nontriviality of the PCPD crossover exponent strongly supports non-DP nature of the PCPD critical scaling, which is further evidenced by the anomalous critical amplitude scaling near the PCPD point. In addition, we find that the DPCPD crossover is consistent with the mean field prediction of the tricritical DP class as expected.

cond-mat.stat-mech↗

Monte Carlo simulations of bosonic reaction-diffusion systems and comparison to Langevin equation description

Using the Monte Carlo simulation method for bosonic reaction-diffusion systems introduced recently [S.-C. Park, Phys. Rev. E {\bf 72}, 036111 (2005)], one dimensional bosonic models are studied and compared to the corresponding Langevin equations derived from the coherent state path integral formalism. For the single species annihilation model, the exact asymptotic form of the correlation functions is conjectured and the full equivalence of the (discrete variable) master equation and the (continuous variable) Langevin equation is confirmed numerically. We also investigate the cyclically coupled model of bosons which is related to the pair contact process with diffusion (PCPD). From the path integral formalism, Langevin equations which are expected to describe the critical behavior of the PCPD are derived and compared to the Monte Carlo simulations of the discrete model.

cond-mat.stat-mech↗

Monte Carlo simulations of bosonic reaction-diffusion systems

An efficient Monte Carlo simulation method for bosonic reaction-diffusion systems which are mainly used in the renormalization group (RG) study is proposed. Using this method, one dimensional bosonic single species annihilation model is studied and, in turn, the results are compared with RG calculations. The numerical data are consistent with RG predictions. As a second application, a bosonic variant of the pair contact process with diffusion (PCPD) is simulated and shown to share the critical behavior with the PCPD. The invariance under the Galilean transformation of this boson model is also checked and discussion about the invariance in conjunction with other models are in order.

cond-mat.stat-mech↗

Generating Function for Particle-Number Probability Distribution in Directed Percolation

We derive a generic expression for the generating function (GF) of the particle-number probability distribution (PNPD) for a simple reaction diffusion model that belongs to the directed percolation universality class. Starting with a single particle on a lattice, we show that the GF of the PNPD can be written as an infinite series of cumulants taken at zero momentum. This series can be summed up into a complete form at the level of a mean-field approximation. Using the renormalization group techniques, we determine logarithmic corrections for the GF at the upper critical dimension. We also find the critical scaling form for the PNPD and check its universality numerically in one dimension. The critical scaling function is found to be universal up to two non-universal metric factors.

cond-mat.stat-mech↗

Driven Pair Contact Process with Diffusion

The pair contact process with diffusion (PCPD) has been recently investigated extensively, but its critical behavior is not yet clearly established. By introducing biased diffusion, we show that the external driving is relevant and the driven PCPD exhibits a mean-field-type critical behavior even in one dimension. In systems which can be described by a single-species bosonic field theory, the Galilean invariance guarantees that the driving is irrelevant. The well-established directed percolation (DP) and parity conserving (PC) classes are such examples. This leads us to conclude that the PCPD universality class should be distinct from the DP or PC class. Moreover, it implies that the PCPD is generically a multi-species model and a field theory of two species is suitable for proper description.

cond-mat.stat-mech↗

Cluster mean-field approximations with the coherent-anomaly-method analysis for the driven pair contact process with diffusion

The cluster mean-field approximations are performed, up to 13 cluster sizes, to study the critical behavior of the driven pair contact process with diffusion (DPCPD) and its precedent, the PCPD in one dimension. Critical points are estimated by extrapolating our data to the infinite cluster size limit, which are in good accordance with recent simulation results. Within the cluster mean-field approximation scheme, the PCPD and the DPCPD share the same mean-field critical behavior. The application of the coherent anomaly method, however, shows that the two models develop different coherent anomalies, which lead to different true critical scaling. The values of the critical exponents for the particle density, the pair density, the correlation length, and the relaxation time are fairly well estimated for the DPCPD. These results support and complement our recent simulation results for the DPCPD.

cond-mat.stat-mech↗

Derivation of continuum stochastic equations for discrete growth models

We present a formalism to derive the stochastic differential equations (SDEs) for several solid-on-solid growth models. Our formalism begins with a mapping of the microscopic dynamics of growth models onto the particle systems with reactions and diffusion. We then write the master equations for these corresponding particle systems and find the SDEs for the particle densities. Finally, by connecting the particle densities with the growth heights, we derive the SDEs for the height variables. Applying this formalism to discrete growth models, we find the Edwards-Wilkinson equation for the symmetric body-centered solid-on-solid (BCSOS) model, the Kardar-Parisi-Zhang equation for the asymmetric BCSOS model and the generalized restricted solid-on-solid (RSOS) model, and the Villain--Lai--Das Sarma equation for the conserved RSOS model. In addition to the consistent forms of equations for growth models, we also obtain the coefficients associated with the SDEs.

cond-mat.stat-mech↗

Universality class of the restricted solid-on-solid model with hopping

We study the restricted solid-on-solid (RSOS) model with finite hopping distance $l_{0}$, using both analytical and numerical methods. Analytically, we use the hard-core bosonic field theory developed by the authors [Phys. Rev. E {\bf 62}, 7642 (2000)] and derive the Villain-Lai-Das Sarma (VLD) equation for the $l_{0}=\infty$ case which corresponds to the conserved RSOS (CRSOS) model and the Kardar-Parisi-Zhang (KPZ) equation for all finite values of $l_{0}$. Consequently, we find that the CRSOS model belongs to the VLD universality class and the RSOS models with any finite hopping distance belong to the KPZ universality class. There is no phase transition at a certain finite hopping distance contrary to the previous result. We confirm the analytic results using the Monte Carlo simulations for several values of the finite hopping distance.

cond-mat.stat-mech↗

Two-point correlation functions of the diffusion-limited annihilation in one dimension

Two-point density-density correlation functions for the diffusive binary reaction system $A+A\to\emptyset$ are obtained in one dimension via Monte Carlo simulation. The long-time behavior of these correlation functions clearly deviates from that of a recent analytical prediction of Bares and Mobilia [Phys. Rev. Lett. {\bf 83}, 5214 (1999)]. An alternative expression for the asymptotic behavior is conjectured from numerical data.

cond-mat.stat-mech↗

Path-Integral Formulation of Stochastic Processes for the Exclusive Particle Systems

We present the systematic formalism to derive the path-integral formulation for the hard-core particle systems far from equilibrium. Writing the master equation for a stochastic process of the system in terms of the annihilation and creation operators with the mixed commutation relations, we find the Kramers-Moyal coefficients for the corresponding Fokker-Planck equation (FPE) and the stochastic differential equation (SDE) is derived by connecting these coefficients in the FPE to those in the SDE. Finally, the SDE is mapped onto the field-theory using the path-integral, giving the field-theoretic action which may be analyzed by the renormalization group method. We apply this formalism to the two-species reaction-diffusion system with the drift, finding a universal decay expoent for the long-time behavior of the average concentration of particles in arbitrary dimensions.

cond-mat.stat-mech↗

Comment on ``Solution of Classical Stochastic One-Dimensional Many-Body Systems''

In a recent Letter, Bares and Mobilia proposed the method to find solutions of the stochastic evolution operator $H=H_0 + {γ\over L} H_1$ with a non-trivial quartic term $H_1$. They claim, ``Because of the conservation of probability, an analog of the Wick theorem applies and all multipoint correlation functions can be computed.'' Using the Wick theorem, they expressed the density correlation functions as solutions of a closed set of integro-differential equations. In this Comment, however, we show that applicability of Wick theorem is restricted to the case $γ= 0$ only.

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