arXiv subjects

Subhadip Chakraborti

Publications and source records attributed to Subhadip Chakraborti.

13 recordsLinked to original sources

arXiv2025

Density-dependent transport coefficients in two-dimensional cellular aggregates

The large-scale collective behavior of biological systems can be characterized by macroscopic transport, which arises from the non-equilibrium microscopic interactions among individual constituents. A prominent example is the formation of dynamic aggregates by motile eukaryotic cells or bacteria mediated by active contractile forces. In this work, we develop the two-dimensional fluctuating hydrodynamics theory based on the microscopic dynamics of a model system of aggregation by \textit{Neisseria gonorrhoeae} bacteria. The derivation of two macroscopic transport coefficients of bulk diffusivity and conductivity which determine hydrodynamic current of cells is the central result of this work. By showing how transport coefficients depend on cell density and microscopic parameters of the system we predict transport slowdown during the colony formation process. This study provides valuable analytical tools for quantifying hydrodynamic transport in experimental systems involving cellular aggregation occurring due to intermittent contractile dipole forces.

cond-mat.stat-mech↗

arXiv2024

Fluctuating Hydrodynamics Describes Transport in Cellular Aggregates

Biological functionality of cellular aggregates is largely influenced by the activity and displacements of individual constituent cells. From a theoretical perspective this activity can be characterized by hydrodynamic transport coefficients of diffusivity and conductivity. Motivated by the clustering dynamics of bacterial microcolonies we propose a model of active multicellular aggregates and use recently developed macroscopic fluctuation theory to derive a fluctuating hydrodynamics for this model system. Both semi-analytic theory and microscopic simulations show that the hydrodynamic transport coefficients are affected by non-equilibrium microscopic parameters and significantly decrease inside of the clusters. We further find that the Einstein relation connecting the transport coefficients and fluctuations breaks down in the parameter regime where the detailed balance is not satisfied. This study offers valuable tools for experimental investigation of hydrodynamic transport in other systems of cellular aggregates such as tumor spheroids and organoids.

cond-mat.soft↗

arXiv2023

Blast waves in the zero temperature hard sphere gas: double scaling structure

We study the blast generated by sudden localized release of energy in a cold gas. Specifically, we consider one-dimensional hard-rod gas and two-dimensional hard disc gas. For this problem, the Taylor-von Neumann-Sedov (TvNS) solution of Euler equations has a self-similar form. The shock wave remains infinitely strong for the zero-temperature gas, so the solution applies indefinitely. The TvNS solution ignores dissipation, however. We show that this is erroneous in the core region which, in two dimensions, expands as $t^{2/5}$ while the shock wave propagates as $t^{1/2}$. A new self-similar solution depending on the scaling variable $r/t^{2/5}$ describes the core, while the TvNS solution describes the bulk. We demonstrate this from a numerical solution of the Navier-Stokes (NS) equations and from molecular dynamics simulations for a gas of hard discs in two dimensions and hard rods in one dimension. In both cases, the shock front position predicted by NS equations and by the TvNS solution agrees with that predicted by molecular dynamics simulations. However, the NS equations fail to describe the near-core form of the scaling functions.

cond-mat.stat-mech↗

arXiv2022

Boltzmann's entropy during free expansion of an interacting ideal gas

In this work we study the evolution of Boltzmann's entropy in the context of free expansion of a one dimensional interacting gas inside a box. Boltzmann's entropy is defined for single microstates and is given by the phase-space volume occupied by microstates with the same value of macrovariables which are coarse-grained physical observables. We demonstrate the idea of typicality in the growth of the Boltzmann's entropy for two choices of macro-variables -- the single particle phase space distribution and the hydrodynamic fields. Due to the presence of interaction, the growth curves for both these entropies are observed to converge to a monotonically increasing limiting curve, on taking the appropriate order of limits, of large system size and small coarse graining scale. Moreover, we observe that the limiting growth curves for the two choices of entropies are identical as implied by local thermal equilibrium. We also discuss issues related to finite size and finite coarse gaining scale which lead interesting features such as oscillations in the entropy growth curve. We also discuss shocks observed in the hydrodynamic fields.

cond-mat.stat-mech↗

arXiv2022

Entropy growth during free expansion of an ideal gas

To illustrate Boltzmann's construction of an entropy function that is defined for a microstate of a macroscopic system, we present here the simple example of the free expansion of a one dimensional gas of non-interacting point particles. The construction requires one to define macrostates, corresponding to macroscopic variables. We define a macrostate $M$ by specifying the fraction of particles in rectangular boxes $Δx Δv$ of the single particle position-velocity space $\{x,v\}$. We verify that when the number of particles is large the Boltzmann entropy, $S_B(t)$, of a typical microstate of a nonequilibrium ensemble coincides with the Gibbs entropy of the coarse-grained time-evolved one-particle distribution associated with this ensemble. $S_B(t)$ approaches its maximum possible value for the dynamical evolution of the given initial state. The rate of approach depends on the size of $Δv$ in the definition of the macrostate, going to zero at any fixed time $t$ when $Δv \to 0$. Surprisingly the different curves $S_B(t)$ collapse when time is scaled with $Δv$ as: $t \sim τ/Δv$. We find an explicit expression for $S_B(τ)$ in the limit $Δv \to 0$. We also consider a different, more hydrodynamical, definition of macrostates for which $S_B(t)$ is monotone increasing, unlike the previous one which has small decaying oscillations near its maximum value. Our system is non-ergodic, non-chaotic and non-interacting; our results thus illustrate that these concepts are not as relevant as sometimes claimed, for observing macroscopic irreversibility and entropy increase. Rather, the notions of initial conditions, typicality, large numbers and coarse-graining are the important factors. We demonstrate these ideas through extensive simulations as well as analytic results.

cond-mat.stat-mech↗

arXiv2022

A splash in a one-dimensional cold gas

We consider a set of hard point particles distributed uniformly with a specified density on the positive half-line and all initially at rest. The particle masses alternate between two values, $m$ and $M$. The particles interact via collisions that conserve energy and momentum. We study the cascade of activity that results when the left-most particle is given a positive velocity. At long times we find that this leads to two fascinating features in the observed dynamics. First, in the bulk of the gas, a shock front develops separating the cold gas from a thermalized region. The shock-front travels sub-ballistically, with the bulk described by self-similar solutions of Euler hydrodynamics. Second, there is a splash region formed by the recoiled particles which move ballistically with negative velocities. The splash region is completely non-hydrodynamic and we propose two conjectures for the long time particle dynamics in this region. We provide a detailed analytic understanding of these coexisting regimes. These are supported by the results of molecular dynamics simulations.

cond-mat.stat-mech↗

arXiv2021

Blast in a One-Dimensional Cold Gas: From Newtonian Dynamics to Hydrodynamics

A gas composed of a large number of atoms evolving according to Newtonian dynamics is often described by continuum hydrodynamics. Proving this rigorously is an outstanding open problem, and precise numerical demonstrations of the equivalence of the hydrodynamic and microscopic descriptions are rare. We test this equivalence in the context of the evolution of a blast wave, a problem that is expected to be at the limit where hydrodynamics could work. We study a one-dimensional gas at rest with instantaneous localized release of energy for which the hydrodynamic Euler equations admit a self-similar scaling solution. Our microscopic model consists of hard point particles with alternating masses, which is a nonintegrable system with strong mixing dynamics. Our extensive microscopic simulations find a remarkable agreement with Euler hydrodynamics, with deviations in a small core region that are understood as arising due to heat conduction.

cond-mat.stat-mech↗

arXiv2021

Transport and fluctuations in mass aggregation processes: mobility driven clustering

We calculate the bulk-diffusion coefficient and the conductivity in a broad class of conserved-mass aggregation processes on a ring of discrete sites. These processes involve chipping and fragmentation of masses, which diffuse around and aggregate upon contact with their neighboring masses. We find that, even in the absence of microscopic time reversibility, the systems satisfy an Einstein relation, which connects the ratio of the conductivity and the bulk-diffusion coefficient to mass fluctuation. Interestingly, when aggregation dominates over chipping, the conductivity or, equivalently, the mobility, gets enhanced. The enhancement in conductivity, in accordance with the Einstein relation, results in large mass fluctuations, implying a {\it mobility driven clustering} in the system. Indeed, in a certain parameter regime, we demonstrate that the conductivity diverges beyond a critical density, signaling the onset of a condensation transition observed in the past. In a striking similarity to Bose-Einstein condensation, the condensate formation along with the diverging conductivity thus underlies a dynamic "superfluidlike" transition in these nonequilibrium systems. Notably, the bulk-diffusion coefficient remains finite in all cases. Our analytic results are in a quite good agreement with simulations.

cond-mat.stat-mech↗

arXiv2021

The Taylor-von Neumann-Sedov blast-wave solution: comparisons with microscopic simulations of a one-dimensional gas

We study the response of an infinite system of point particles on the line initially at rest on the instantaneous release of energy in a localized region. We make a detailed comparison of the hydrodynamic variables predicted by Euler equations for non-dissipative ideal compressible gas and the results of direct microscopic simulations. At long times the profiles of the three conserved variables evolve to self-similar scaling forms, with a scaling exponent as predicted by the Taylor-von Neumann-Sedov (TvNS) blast-wave solution. The scaling functions obtained from the microscopic dynamics show a remarkable agreement with the TvNS predictions, except at the blast core, where the TvNS solution predicts a diverging temperature which is not observed in simulations. We show that the effect of heat conduction becomes important and present results from a numerical solution of the full Navier-Stokes-Fourier equations. A different scaling form is observed in the blast core and this is carefully analyzed. Our microscopic model is the one-dimensional alternate mass hard-particle gas which has the ideal gas equation of state but is non-integrable and known to display fast equilibration.

cond-mat.stat-mech↗

arXiv2020

Hard core run and tumble particles on a one dimensional lattice

We study the large scale behavior of a collection of hard core run and tumble particles on a one dimensional lattice with periodic boundary conditions. Each particle has persistent motion in one direction decided by an associated spin variable until the direction of spin is reversed. We map the run and tumble model to a mass transfer model with fluctuating directed bonds. We calculate the steady state single site mass distribution in the mass model within a mean field approximation for larger spin-flip rates and by analyzing an appropriate coalescence fragmentation model for small spin-flip rates. We also calculate the hydrodynamic coefficients of diffusivity and conductivity for both large and small spin-flip rates and show that the Einstein relation is violated in both regimes. We also show how the non-gradient nature of the process can be taken into account in a systematic manner to calculate the hydrodynamic coefficients.

cond-mat.stat-mech↗

arXiv2020

Hydrodynamics, superfluidity and giant number fluctuations in a model of self-propelled particles

We derive hydrodynamics of a prototypical one dimensional model, having variable-range hopping, which mimics passive diffusion and ballistic motion of active, or self-propelled, particles. The model has two main ingredients - the hardcore interaction and the competing mechanisms of short and long range hopping. We calculate two density-dependent transport coefficients - the bulk-diffusion coefficient and the conductivity, the ratio of which, despite violation of detailed balance, is connected to number fluctuation by an Einstein relation. In the limit of infinite range hopping, the model exhibits, upon tuning density $ρ$ (or activity), a "superfluid" transition from a finitely conducting state to an infinitely conducting one, characterized by a divergence in conductivity $χ(ρ) \sim (ρ-ρ_c)^{-1}$ with $ρ_c$ being the critical density. The diverging conductivity greatly increases particle (or vacancy) mobility and induces "giant" number fluctuations in the system.

cond-mat.stat-mech↗

arXiv2019

Additivity and density fluctuations in Vicsek-like models of self-propelled particles

We study coarse-grained density fluctuations in the disordered phase of the paradigmatic Vicsek-like models of self-propelled particles with alignment interactions and random self-propulsion velocities. By numerically integrating a fluctuation-response relation - the direct consequence of an additivity property, we compute logarithm of the large-deviation probabilities of the coarse-grained subsystem density, while the system is in the disordered fluid phase with vanishing macroscopic velocity. The large-deviation probabilities, computed within additivity, agree remarkably well with that obtained from direct microscopic simulations of the models. Our results provide an evidence of the existence of an equilibrium-like chemical potential, which governs the coarse-grained density fluctuations in the Vicsek-like models. Moreover, comparison of the particle-number fluctuations among several self-propelled particle systems suggests a common mechanism through which the number fluctuations arise in such systems.

cond-mat.stat-mech↗

arXiv2016

Additivity, density fluctuations, and nonequilibrium thermodynamics for active Brownian particles

Using an additivity property, we study particle-number fluctuations in a system of interacting self-propelled particles, called active Brownian particles (ABPs), which consists of repulsive disks with random self-propulsion velocities. From a fluctuation-response relation - a direct consequence of additivity, we formulate a thermodynamic theory which captures the previously observed features of nonequilibrium phase transition in the ABPs from a homogeneous fluid phase to an inhomogeneous phase of coexisting gas and liquid. We substantiate the predictions of additivity by analytically calculating the subsystem particle-number distributions in the homogeneous fluid phase away from criticality where analytically obtained distributions are compatible with simulations in the ABPs.

cond-mat.stat-mech↗