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Subramanian K. R. S. Sankaranarayanan

Publications and source records attributed to Subramanian K. R. S. Sankaranarayanan.

At least 19 recordsLinked to original sources

Symbolic Ensemble Learning Enables Discovery of Fast Accurate Physics-Based Interatomic Potentials

Machine learning has transformed materials simulation by delivering force fields with ab initio accuracy, yet bridging the gap between high-dimensional regression and physical interpretability remains a grand challenge. Conventional analytical potentials offer transparency but often fail to capture the complexity of far-from-ground state regimes. Here, we introduce a hybrid symbolic-neural framework that unifies the interpretability of the Embedded Atom Method (EAM) with the adaptability of data-driven learning. Using Equation Learner Neural Networks (EqNNs) trained on density functional theory (DFT) data, we obtain interpretable models for aluminum through three distinct training protocols: random initialization trained via Monte Carlo Tree Search (MCTS) and gradient descent, and two transfer-learning strategies initialized from a copper potential - one employing MCTS followed by gradient descent, and the other using gradient descent only. We find that while all three resulting symbolic models achieve sub-10 meV/atom accuracy, they occupy distinct local minima in the functional landscape, exhibiting complementary trade-offs across phonon dispersion, surface energetics, and elastic response. By integrating these diverse functional forms through a weighted symbolic ensemble, we derive a composite potential that surpasses the fidelity of its constituent models. The resulting ensemble effectively mitigates individual biases, delivering superior consistency with DFT benchmarks across equation-of-state curvature, phonon spectra, and melting dynamics. This approach demonstrates that combining transfer learning with ensemble symbolic regression yields compact, transparent potentials capable of robust prediction across equilibrium and non-equilibrium states.

cond-mat.mtrl-sci↗

AutoMOOSE: An Agentic AI for Autonomous Phase-Field Simulation

Phase-field modeling links thermodynamics and kinetics to microstructural evolution, but multiphysics frameworks such as MOOSE require expertise to construct inputs, manage campaigns, diagnose failures, and validate results. We introduce AutoMOOSE, an open-source multi-agent framework that orchestrates the simulation lifecycle from a single natural-language prompt. Six specialized agents--Architect, Input Writer, Runner, Reviewer, Visualization, and a physics-grounded Skeptic--generate, execute, analyze, and adversarially test simulations against conservation laws, asymptotic limits, and scaling relations. We validate AutoMOOSE in two domains: non-conserved copper grain growth governed by Allen-Cahn dynamics and conserved Fe-Cr spinodal decomposition governed by Cahn-Hilliard dynamics. On a prospectively specified 25-task grain-growth benchmark spanning temperature, grain count, resolution, and model formulation, AutoMOOSE generates valid inputs for all 25 tasks, completes 19 simulations with measurable coarsening, and delivers 15 results that satisfy Burke-Turnbull kinetics ($R^2 \geq 0.90$) and survive Skeptic falsification. The failures trace to two identifiable generator defects. An ensemble of 1000 simulations recovers the prescribed activation energy to within 1% after finite-size extrapolation ($Q_\infty = 0.228$ eV versus $0.230$ eV). In the conserved domain, an agent-generated CALPHAD-based Fe-Cr simulation limits relative mass drift to $6.3 \times 10^{-6}$, dissipates free energy to a stable plateau, and evolves toward the equilibrium tie-line. Controlled ablations show that the full pipeline converts stochastic raw generation--3-7 successful tasks out of 8 across repeated trials--into consistent success on all 8 tasks. AutoMOOSE therefore provides a practical route from natural-language specification to reproducible, physics-validated phase-field simulation campaigns.

cs.AI↗

Sub-1-Angstrom-Resolution Imaging Reveals Phase Contrast Transition in Ice Ih Caused by Basal Stacking Faults

Phase-contrast transmission electron microscopy (TEM) of hexagonal ice (Ih) along [0001] sometimes shows a honeycomb-like pattern, often interpreted as individual oxygen columns in single crystals. Here, we show that this pattern commonly arises from intrinsic basal stacking faults instead. A translational boundary separating domains of comparable thickness, with an in-plane offset of $(\frac{2}{3} a_{1} + \frac{1}{3} a_{2})$, produces this honeycomb-like contrast. Stacking domains translated in nonequivalent directions yields patterns resembling cubic ice (Ic) along [111] but with a 3-fold symmetry. We imaged this structure at a record-breaking line resolution of 89 picometers, finer than the O-H covalent bond length. These findings highlight the defect tolerance of ice's molecular packing and clarify the structural relationships among hexagonal, stacking-disordered, and cubic ice phases. This resolution milestone opens new avenues for characterizing subtle structural perturbations of water in the solid state.

cond-mat.mtrl-sci↗

Physically Interpretable Interatomic Potentials via Symbolic Regression and Reinforcement Learning

The development of next-generation molecular simulation models requires moving beyond pre-defined functional forms toward machine learning (ML) techniques that directly capture multiscale physics. Here, we demonstrate such an approach using symbolic regression (SR) with equation learner networks and a reinforcement learning search engine to derive interpretable equations for interatomic interactions. Training data were generated through nested ensemble sampling with density functional theory (DFT) energetics, spanning crystalline to highly disordered states. The optimization of the learner network employed continuous-action Monte Carlo Tree Search (MCTS) combined with gradient descent, enabling efficient exploration of function space. For copper as a representative transition metal, an unconstrained search produced models that outperformed fixed-form Sutton-Chen EAM potentials. The SR-derived models (SR1 and SR2) reproduced key material properties - lattice constants, cohesive energies, equations of state, elastic constants, phonon dispersion, defect formation energies, surface/bulk energetics, and phase transformation with significantly improved accuracy. Furthermore, stringent melting simulations using two-phase solid-amorphous interfaces confirmed that SR models accurately capture the interplay of vibrational entropy, cohesive energy, and structural dynamics, surpassing SC-EAM in both qualitative and quantitative predictions. This highlights the potential of SR to deliver fast, accurate, flexible, and physically meaningful potentials, advancing predictive modeling across scales.

cond-mat.mtrl-sci↗

Harnessing Machine Learning for Quantum-Accurate Predictions of Non-Equilibrium Behavior in 2D Materials

Accurately predicting the non-equilibrium mechanical properties of two-dimensional (2D) materials is essential for understanding their deformation, thermo-mechanical properties, and failure mechanisms. In this study, we parameterize and evaluate two machine learning (ML) interatomic potentials, SNAP and Allegro, for modeling the non-equilibrium behavior of monolayer MoSe2. Using a density functional theory (DFT) derived dataset, we systematically compare their accuracy and transferability against the physics-based Tersoff force field. Our results show that SNAP and Allegro significantly outperform Tersoff, achieving near-DFT accuracy while maintaining computational efficiency. Allegro surpasses SNAP in both accuracy and efficiency due to its advanced neural network architecture. Both ML potentials demonstrate strong transferability, accurately predicting out-of-sample properties such as surface stability, inversion domain formation, and fracture toughness. Unlike Tersoff, SNAP and Allegro reliably model temperature-dependent edge stabilities and phase transformation pathways, aligning closely with DFT benchmarks. Notably, their fracture toughness predictions closely match experimental measurements, reinforcing their suitability for large-scale simulations of mechanical failure in 2D materials. This study establishes ML-based force fields as a powerful alternative to traditional potentials for modeling non-equilibrium mechanical properties in 2D materials.

cond-mat.mtrl-sci↗

Molecular-Resolution Imaging of Ice Crystallized from Liquid Water

Despite the ubiquity of ice, a molecular-resolution image of ice crystallized from liquid water or the resulting defect structure has never been obtained. Here, we report the stabilization and angstrom-resolution electron imaging of ice Ih crystallized from liquid water by developing cryogenic liquid-cell transmission electron microscopy (CRYOLIC-TEM). We combine lattice mapping with molecular dynamics simulations to reveal that ice formation is highly tolerant to nanoscale defects such as misoriented subdomains and trapped gas bubbles, which are stabilized by molecular-scale structural motifs. Importantly, bubble surfaces adopt low-energy nanofacets and create negligible strain fields in the surrounding crystal. These bubbles can dynamically nucleate, grow, migrate, dissolve, and coalesce under electron irradiation and be monitored in situ near a steady state. This work opens the door to understanding water crystallization behaviors at an unprecedented spatial resolution.

cond-mat.mtrl-sci↗

Evolutionary Search and Theoretical Study of Silicene Grain Boundaries' Mechanical Properties

Defects such as grain boundaries (GBs) are almost inevitable during the synthesis process of 2D materials. To take advantage of the fascinating properties of 2D materials, understanding the nature and impact of various GB structures on the pristine 2D sheet is crucial. In this work, using an evolutionary algorithm search, we predict a wide variety of silicene GB structures with very different atomic structures compared to those found in graphene or hexagonal boron-nitride. Twenty-one GBs with the lowest energy were validated by density functional theory (DFT) - a majority of which were previously unreported to our best knowledge. Based on the diversity of the GB predictions, we found that the formation energy and mechanical properties can be dramatically altered by adatoms positions within a GB and certain types of atomic structures, such as four-atom rings. To study the mechanical behavior of these GBs, we apply strain to the GB structures stepwise and use DFT calculations to investigate the mechanical properties of 9 representative structures. It is observed that GB structures based on pentagon-heptagon pairs are likely to have similar or higher in-plane stiffness and strength compared with the zigzag orientation of pristine silicene. However, an adatom located at the hollow site of a heptagon ring can significantly deteriorate the mechanical strength. For all the structures, the in-plane stiffness and strength were found to decrease with increasing formation energy. For the failure behavior of GB structures, it was found that GB structures based on pentagon-heptagon pairs have failure behavior similar to graphene. We also found that the GB structures with atoms positioned outside of the 2D plane tend to experience phase transitions before failure. Utilizing the evolutionary algorithm, we locate diverse silicene GBs and obtain useful information for their mechanical properties.

cond-mat.mtrl-sci↗

Machine learning for classifying and interpreting coherent X-ray speckle patterns

Speckle patterns produced by coherent X-ray have a close relationship with the internal structure of materials but quantitative inversion of the relationship to determine structure from speckle patterns is challenging. Here, we investigate the link between coherent X-ray speckle patterns and sample structures using a model 2D disk system and explore the ability of machine learning to learn aspects of the relationship. Specifically, we train a deep neural network to classify the coherent X-ray speckle patterns according to the disk number density in the corresponding structure. It is demonstrated that the classification system is accurate for both non-disperse and disperse size distributions.

cond-mat.mtrl-sci↗

Elucidation of Relaxation Dynamics Beyond Equilibrium Through AI-informed X-ray Photon Correlation Spectroscopy

Understanding and interpreting dynamics of functional materials \textit{in situ} is a grand challenge in physics and materials science due to the difficulty of experimentally probing materials at varied length and time scales. X-ray photon correlation spectroscopy (XPCS) is uniquely well-suited for characterizing materials dynamics over wide-ranging time scales, however spatial and temporal heterogeneity in material behavior can make interpretation of experimental XPCS data difficult. In this work we have developed an unsupervised deep learning (DL) framework for automated classification and interpretation of relaxation dynamics from experimental data without requiring any prior physical knowledge of the system behavior. We demonstrate how this method can be used to rapidly explore large datasets to identify samples of interest, and we apply this approach to directly correlate bulk properties of a model system to microscopic dynamics. Importantly, this DL framework is material and process agnostic, marking a concrete step towards autonomous materials discovery.

cond-mat.mtrl-sci↗

Efficient Probabilistic Computing with Stochastic Perovskite Nickelates

Probabilistic computing has emerged as a viable approach to solve hard optimization problems. Devices with inherent stochasticity can greatly simplify their implementation in electronic hardware. Here, we demonstrate intrinsic stochastic resistance switching controlled via electric fields in perovskite nickelates doped with hydrogen. The ability of hydrogen ions to reside in various metastable configurations in the lattice leads to a distribution of transport gaps. With experimentally characterized p-bits, a shared-synapse p-bit architecture demonstrates highly-parallelized and energy-efficient solutions to optimization problems such as integer factorization and Boolean-satisfiability. The results introduce perovskite nickelates as scalable potential candidates for probabilistic computing and showcase the potential of light-element dopants in next-generation correlated semiconductors.

cond-mat.mtrl-sci↗

BLAST: Bridging Length/time scales via Atomistic Simulation Toolkit

The ever-increasing power of supercomputers coupled with highly scalable simulation codes have made molecular dynamics an indispensable tool in applications ranging from predictive modeling of materials to computational design and discovery of new materials for a broad range of applications. Multi-fidelity scale bridging between the various flavors of molecular dynamics i.e. ab-initio, classical and coarse-grained models has remained a long-standing challenge. Here, we introduce our framework BLAST (Bridging Length/time scales via Atomistic Simulation Toolkit) that leverages machine learning principles to address this challenge. BLAST is a multi-fidelity scale bridging framework that provide users with the capabilities to train and develop their own classical atomistic and coarse-grained interatomic potentials (force fields) for molecular simulations. BLAST is designed to address several long-standing problems in the molecular simulations community, such as unintended misuse of existing force fields due to knowledge gap between developers and users, bottlenecks in traditional force field development approaches, and other issues relating to the accuracy, efficiency, and transferability of force fields. Here, we discuss several important aspects in force field development and highlight features in BLAST that enable its functionalities and ease of use.

cs.CE↗

Active Learning the Coarse-Grained Energy Landscape For Water Clusters From Sparse Training Data

ANNs are currently trained by generating large quantities (On the order of $10^{4}$ or greater) of structural data in hopes that the ANN has adequately sampled the energy landscape both near and far-from-equilibrium. This can, however, be a bit prohibitive when it comes to more accurate levels of quantum theory. As such it is desirable to train a model using the absolute minimal data set possible, especially when costs of high-fidelity calculations such as CCSD and QMC are high. Here, we present an Active Learning approach that iteratively trains an ANN model to faithfully replicate the coarse-grained energy surface of water clusters using only 426 total structures in its training data. Our active learning workflow starts with a sparse training dataset which is continually updated via a Monte Carlo scheme that sparsely queries the energy landscape and tests the network performance. Next, the network is retrained with an updated training set that includes failed configurations/energies from previous iteration until convergence is attained. Once trained, we generate an extensive test set of ~100,000 configurations sampled across clusters ranging from 1 to 200 molecules and demonstrate that the trained network adequately reproduces the energies (within mean absolute error (MAE) of ~ 2 meV/molecule) and forces (MAE ~ 40 meV/{Å}) compared to the reference model. More importantly, the trained ANN model also accurately captures both the structure as well as the free energy as a function of the various cluster sizes. Overall, this study reports a new active learning scheme with promising strategy to develop accurate force-fields for molecular simulations using extremely sparse training data sets.

physics.comp-ph↗

A coarse-grained deep neural network model for liquid water

We introduce a coarse-grained deep neural network model (CG-DNN) for liquid water that utilizes 50 rotational and translational invariant coordinates, and is trained exclusively against energies of ~30,000 bulk water configurations. Our CG-DNN potential accurately predicts both the energies and molecular forces of water; within 0.9 meV/molecule and 54 meV/angstrom of a reference (coarse-grained bond-order potential) model. The CG-DNN water model also provides good prediction of several structural, thermodynamic, and temperature dependent properties of liquid water, with values close to that obtained from the reference model. More importantly, CG-DNN captures the well-known density anomaly of liquid water observed in experiments. Our work lays the groundwork for a scheme where existing empirical water models can be utilized to develop fully flexible neural network framework that can subsequently be trained against sparse data from high-fidelity albeit expensive beyond-DFT calculations.

physics.comp-ph↗

Phase Segmentation in Atom-Probe Tomography Using Deep Learning-Based Edge Detection

Atom-probe tomography (APT) facilitates nano- and atomic-scale characterization and analysis of microstructural features. Specifically, APT is well suited to study the interfacial properties of granular or heterophase systems. Traditionally, the identification of the interface between, for precipitate and matrix phases, in APT data has been obtained either by extracting iso-concentration surfaces based on a user-supplied concentration value or by manually perturbing the concentration value until the iso-concentration surface qualitatively matches the interface. These approaches are subjective, not scalable, and may lead to inconsistencies due to local composition inhomogeneities. We propose a digital image segmentation approach based on deep neural networks that transfer learned knowledge from natural images to automatically segment the data obtained from APT into different phases. This approach not only provides an efficient way to segment the data and extract interfacial properties but does so without the need for expensive interface labeling for training the segmentation model. We consider here a system with a precipitate phase in a matrix and with three different interface modalities---layered, isolated, and interconnected---that are obtained for different relative geometries of the precipitate phase. We demonstrate the accuracy of our segmentation approach through qualitative visualization of the interfaces, as well as through quantitative comparisons with proximity histograms obtained by using more traditional approaches.

cond-mat.mtrl-sci↗

Comparing optimization strategies for force field parameterization

Classical molecular dynamics (MD) simulations enable modeling of materials and examination of microscopic details that are not accessible experimentally. The predictive capability of MD relies on the force field (FF) used to describe interatomic interactions. FF parameters are typically determined to reproduce selected material properties computed from density functional theory (DFT) and/or measured experimentally. A common practice in parameterizing FFs is to use least-squares local minimization algorithms. Genetic algorithms (GAs) have also been demonstrated as a viable global optimization approach, even for complex FFs. However, an understanding of the relative effectiveness and efficiency of different optimization techniques for the determination of FF parameters is still lacking. In this work, we evaluate various FF parameter optimization schemes, using as example a training data set calculated from DFT for different polymorphs of Ir$O_2$. The Morse functional form is chosen for the pairwise interactions and the optimization of the parameters against the training data is carried out using (1) multi-start local optimization algorithms: Simplex, Levenberg-Marquardt, and POUNDERS, (2) single-objective GA, and (3) multi-objective GA. Using random search as a baseline, we compare the algorithms in terms of reaching the lowest error, and number of function evaluations. We also compare the effectiveness of different approaches for FF parameterization using a test data set with known ground truth (i.e generated from a specific Morse FF). We find that the performance of optimization approaches differs when using the Test data vs. the DFT data. Overall, this study provides insight for selecting a suitable optimization method for FF parameterization, which in turn can enable more accurate prediction of material properties and chemical phenomena.

physics.comp-ph↗

Evolutionary optimization of a charge transfer ionic potential model for Ta/Ta-oxide hetero-interfaces

Tantalum, tantalum oxide and their hetero-interfaces are of tremendous technological interest in several applications spanning electronics, thermal management, catalysis and biochemistry. For example, local oxygen stoichiometry variation in TaOx memristors comprising of metallic (Ta) and insulating oxide (Ta2O5) have been shown to result in fast switching on the sub-nanosecond timescale over a billion cycles, relevant to neuromorphic computation. Despite its broad importance, an atomistic scale understanding of oxygen stoichiometry variation across Ta/TaOx hetero-interfaces, such as during early stages of oxidation and oxide growth, is not well understood. This is mainly due to the lack of a variable charge interatomic potential model for tantalum oxides that can accurately describe the ionic interactions in the metallic (Ta) and oxide (TaOx) environment as well as at their interfaces. To address this challenge, we introduce a charge transfer ionic potential (CTIP) model for Ta/Ta-oxide system by training against lattice parameters, cohesive energies, equations of state, and elastic properties of various experimentally observed Ta2O5 polymorphs. The best set of CTIP parameters are determined by employing a single-objective global optimization scheme driven by genetic algorithms followed by local Simplex optimization. Our newly developed CTIP potential accurately predicts structure, thermodynamics, energetic ordering of polymorphs, as well as elastic and surface properties of both Ta and Ta2O5, in excellent agreement with DFT calculations and experiments. We employ our newly parameterized CTIP potential to investigate the early stages of oxidation of Ta at different temperatures and atomic/molecular nature of the oxidizing species.

cond-mat.mtrl-sci↗

Perovskite Quantum Organismoids

A central characteristic of living beings is the ability to learn from and respond to their environment leading to habit formation and decision making1-3. This behavior, known as habituation, is universal among forms of life with a central nervous system, and interestingly observed even in single cellular organisms that do not possess a brain4-5. Here, we report the discovery of habituation based plasticity utilizing a perovskite quantum system by dynamical modulation of electron localization via reversible dopant incorporation. Microscopic mechanisms and pathways that enable this organismic collective charge-lattice interaction are elucidated by a combination of first-principles theory, synchrotron investigations, ab-initio dynamical simulations and in-situ environmental breathing studies. We implement a new learning algorithm inspired from the conductance relaxation behavior of perovskites that naturally incorporates habituation and demonstrate "learning to forget": a key feature of animal and human brains6. Most surprisingly, our results show that incorporating this elementary skill in learning dramatically boosts the capability of artificial cognitive systems.

cond-mat.mtrl-sci↗

In-situ 3D Imaging of Catalysis Induced Strain in Gold Nanoparticles

Multi-electron transfer processes, such as hydrogen and oxygen evolution reactions, are crucially important in energy and biological science but require favorable catalysts to achieve fast kinetics. Nanostructuring catalysts can dramatically improve their properties, which can be difficult to understand due to strain and size dependent thermodynamics, the influence of defects, and substrate dependent activities. Here, we report 3D imaging of single gold nanoparticles during catalysis of ascorbic acid decomposition using Bragg coherent diffractive imaging (BCDI) as a route to eliminate ensemble effects while elucidating the strain-activity connection. Local strains were measured in single nanoparticles and modeled using reactive molecular dynamics (RMD) simulations and finite element analysis (FEA) simulations. RMD reveals a new chemical pathway for local strain generation in the gold lattice: chemisorption of hydroxyl ions. FEA reveals that the RMD results are transferable to the larger nanocrystal sizes studied in the experiment. Our study reveals the strain-activity connection and opens a powerful new avenue for joint theoretical and experimental studies of multi-electron transfer processes catalyzed by nanocrystals.

cond-mat.mtrl-sci↗