arXiv subjects

Sujan Mandal

Publications and source records attributed to Sujan Mandal.

4 recordsLinked to original sources

arXiv2026

Do Water Molecules Always Stabilize Resonances? Microhydration Effects on Thymine Shape Resonances

We investigate microhydration effects on the three low-lying {\pi}* shape resonances of thymine using the Resonance via Pad\'e approach in combination with the DLPNO-EA-EOM-CCSD method. For isolated thymine, the calculated resonance positions are benchmarked against projected CAP-EA-EOM-CCSD calculations and compared with available theoretical and experimental data. Upon hydration, the 1{\pi}* and 2{\pi}* resonances undergo systematic stabilization accompanied by significant increases in their lifetimes, whereas the 3{\pi}* resonance exhibits a more complex behavior. In particular, the lifetime of the lowest resonance increases from 39 fs in isolated thymine to 110 fs in the thymine(H2O)3 cluster. Detailed analysis reveals that the observed resonance shifts arise from competing contributions involving hydrogen bonding, electrostatic interactions, microsolvation-induced geometric distortion, and finite-basis-set effects. Ghost-atom calculations demonstrate that diffuse basis functions associated with nearby water molecules contribute appreciably to the apparent stabilization, while explicit inclusion of water molecules leads to genuine physical stabilization of the resonance states. Furthermore, calculations on multiple conformers of the monohydrated cluster show that resonance positions and lifetimes depend strongly on the local hydrogen-bonding arrangement and microsolvation geometry. These findings demonstrate that resonance stabilization in microhydrated nucleobases is governed by a subtle interplay between geometry, basis-set effects, and intermolecular interactions.

physics.chem-ph↗

arXiv2026

A reduced-cost two-component relativistic equation-of-motion coupled cluster method for the double electron attachment problem

We present a computationally efficient relativistic formulation of the equation-of-motion coupled-cluster method for the double electron attachment problem. In this work, the exact two-component Hamiltonian within the atomic mean-field approximation is employed, yielding results that are in close agreement with the corresponding four-component calculations. However, canonical DEA-EOM-CCSD calculations become prohibitively expensive for heavy elements and large basis sets due to the substantial memory requirements associated with complex 3p1h excitation manifold. To address this limitation, we introduce a state-specific frozen natural spinor basis that significantly reduces the virtual space through two controllable truncation thresholds. Furthermore, the use of Cholesky decomposition for the two-electron integrals provides an additional reduction in computational cost and memory. The performance of the proposed approach is demonstrated through calculations of double ionization potentials and excitation energies for group-12 and group-14 heavy elements. Vertical excitation energies for heavy chalcogen dimers are also presented. In addition, a range of diatomic spectroscopic constants is evaluated for group-13 halides.

physics.chem-ph↗

arXiv2026

Role of Native and Zwitterionic Glycine in Electron Attachment to DNA: From Dipole-Bound to Solvent-Bound Doorway States

Electron attachment to DNA is strongly influenced by its molecular environment, yet the role of amino acids under physiologically relevant conditions remains poorly understood. Here, we investigate the effect of native and zwitterionic glycine on electron attachment to thymine using high-level electron-affinity calculations and QM/MM molecular dynamics simulations. Under micro-solvated conditions, electron attachment occurs through a dipole-bound doorway state that evolves into a valence-bound anion via nonadiabatic coupling. The zwitterionic form of glycine strengthens stabilization of the diffuse electron owing to its larger internal charge separation, whereas the stability of the valence-bound anion is determined by the hydrogen-bonding geometry. Barrier-free proton transfer is observed only for specific binding motifs and substantially stabilizes the thymine-centered anion. In bulk solution, the doorway mechanism persists, with a solvent-bound state replacing the dipole-bound state as the initial electron-trapping state. The larger electrostatic field of zwitterionic glycine delays electron localization on thymine, while permanent proton transfer is observed only in selected native glycine trajectories and is absent throughout the present simulations of zwitterionic glycine. Despite these differences in electron-transfer dynamics, both amino acid forms provide similar stabilization of the thymine-centered anion after solvent reorganization. Our results establish the solvent-bound state as the condensed-phase analogue of the dipole-bound doorway state and reveal how amino acid environments modulate electron attachment pathways in realistic DNA systems.

physics.chem-ph↗

arXiv2025

A Third-Order Relativistic Algebraic Diagrammatic Construction Method for Double Ionization Potentials: Theory, Implementation, and Benchmark

We present a relativistic third-order algebraic diagrammatic construction (ADC(3)) approach for calculating double ionization potentials (DIPs). By employing the exact two-component atomic mean-field (X2CAMF) Hamiltonian in combination with a Cholesky decomposition (CD) representation of two-electron integrals and the frozen natural spinor (FNS) framework for virtual space truncation, we achieve a significant reduction in both memory requirements and computational cost. The DIPs obtained using the X2CAMF Hamiltonian show excellent agreement with results from fully relativistic four-component calculations. We have validated the accuracy of our implementation through comparisons with available experimental and theoretical data for inert gas atoms and diatomic species. The effect of higher-order relativistic corrections is also explored.

physics.chem-ph↗