arXiv subjects

Susanna C. Manrubia

Publications and source records attributed to Susanna C. Manrubia.

14 recordsLinked to original sources

arXiv2010

The struggle for space: Viral extinction through competition for cells

The design of protocols to suppress the propagation of viral infections is an enduring enterprise, especially hindered by limited knowledge of the mechanisms through which extinction of infection propagation comes about. We here report on a mechanism causing extinction of a propagating infection due to intraspecific competition to infect susceptible hosts. Beneficial mutations allow the pathogen to increase the production of progeny, while the host cell is allowed to develop defenses against infection. When the number of susceptible cells is unlimited, a feedback runaway co-evolution between host resistance and progeny production occurs. However, physical space limits the advantage that the virus can obtain from increasing offspring numbers, thus infection clearance may result from an increase in host defenses beyond a finite threshold. Our results might be relevant to better understand propagation of viral infections in tissues with mobility constraints, and the implications that environments with different geometrical properties might have in devising control strategies.

q-bio.PE↗

arXiv2010

Neutral networks of genotypes: Evolution behind the curtain

Our understanding of the evolutionary process has gone a long way since the publication, 150 years ago, of "On the origin of species" by Charles R. Darwin. The XXth Century witnessed great efforts to embrace replication, mutation, and selection within the framework of a formal theory, able eventually to predict the dynamics and fate of evolving populations. However, a large body of empirical evidence collected over the last decades strongly suggests that some of the assumptions of those classical models necessitate a deep revision. The viability of organisms is not dependent on a unique and optimal genotype. The discovery of huge sets of genotypes (or neutral networks) yielding the same phenotype --in the last term the same organism--, reveals that, most likely, very different functional solutions can be found, accessed and fixed in a population through a low-cost exploration of the space of genomes. The 'evolution behind the curtain' may be the answer to some of the current puzzles that evolutionary theory faces, like the fast speciation process that is observed in the fossil record after very long stasis periods.

q-bio.PE↗

arXiv2008

Fractal properties of isolines at varying altitude reveal different dominant geological processes on Earth

Geometrical properties of landscapes result from the geological processes that have acted through time. The quantitative analysis of natural relief represents an objective form of aiding in the visual interpretation of landscapes, as studies on coastlines, river networks, and global topography, have shown. Still, an open question is whether a clear relationship between the quantitative properties of landscapes and the dominant geomorphologic processes that originate them can be established. In this contribution, we show that the geometry of topographic isolines is an appropriate observable to help disentangle such a relationship. A fractal analysis of terrestrial isolines yields a clear identification of trenches and abyssal plains, differentiates oceanic ridges from continental slopes and platforms, localizes coastlines and river systems, and isolates areas at high elevation (or latitude) subjected to the erosive action of ice. The study of the geometrical properties of the lunar landscape supports the existence of a correspondence between principal geomorphic processes and landforms. Our analysis can be easily applied to other planetary bodies.

physics.geo-ph↗

arXiv2005

Biodiversity in model ecosystems, I: Coexistence conditions for competing species

This is the first of two papers where we discuss the limits imposed by competition to the biodiversity of species communities. In this first paper we study the coexistence of competing species at the fixed point of population dynamic equations. For many simple models, this imposes a limit on the width of the productivity distribution, which is more severe the more diverse the ecosystem is (Chesson, 1994). Here we review and generalize this analysis, beyond the ``mean-field''-like approximation of the competition matrix used in previous works, and extend it to structured food webs. In all cases analysed, we obtain qualitatively similar relations between biodiversity and competition: the narrower the productivity distribution is, the more species can stably coexist. We discuss how this result, considered together with environmental fluctuations, limits the maximal biodiversity that a trophic level can host.

q-bio.PE↗

arXiv2005

Biodiversity in model ecosystems, II: Species assembly and food web structure

This is the second of two papers dedicated to the relationship between population models of competition and biodiversity. Here we consider species assembly models where the population dynamics is kept far from fixed points through the continuous introduction of new species, and generalize to such models thecoexistence condition derived for systems at the fixed point. The ecological overlap between species with shared preys, that we define here, provides a quantitative measure of the effective interspecies competition and of the trophic network topology. We obtain distributions of the overlap from simulations of a new model based both on immigration and speciation, and show that they are in good agreement with those measured for three large natural food webs. As discussed in the first paper, rapid environmental fluctuations, interacting with the condition for coexistence of competing species, limit the maximal biodiversity that a trophic level can host. This horizontal limitation to biodiversity is here combined with either dissipation of energy or growth of fluctuations, which in our model limit the length of food webs in the vertical direction. These ingredients yield an effective model of food webs that produce a biodiversity profile with a maximum at an intermediate trophic level, in agreement with field studies.

q-bio.PE↗

arXiv2002

Scaling of voids and fractality in the galaxy distribution

We study here, from first principles, what properties of voids are to be expected in a fractal point distribution and how the void distribution is related to its morphology. We show this relation in various examples and apply our results to the distribution of galaxies. If the distribution of galaxies forms a fractal set, then this property results in a number of scaling laws to be fulfilled by voids. Consider a fractal set of dimension $D$ and its set of voids. If voids are ordered according to decreasing sizes (largest void has rank R=1, second largest R=2 and so on), then a relation between size $Λ$ and rank of the form $Λ(R) \propto R^{-z}$ must hold, with $z = d/D$, and where $d$ is the euclidean dimension of the space where the fractal is embedded. The physical restriction $D < d$ means that $z > 1$ in a fractal set. The average size $\bar Λ$ of voids depends on the upper ($Λ_u$) and the lower ($Λ_l$) cut-off as ${\bar Λ} \propto Λ_u^{1-D/d} Λ_l^{D/d}$. Current analysis of void sizes in the galaxy distribution do not show evidence of a fractal distribution, but are insufficient to rule it out. We identify possible shortcomings of current void searching algorithms, such as changes of shape in voids at different scales or merging of voids, and propose modifications useful to test fractality in the galaxy distribution.

astro-ph↗

arXiv2002

At the boundary between biological and cultural evolution: The origin of surname distributions

Surnames and nonrecombining alleles are inherited from a single parent in a highly similar way. A simple birth-death model with mutations can accurately describe this process. Exponentially growing and constant populations are investigated, and we study how different compositions of the founder populations can be observed in present-day diversity distributions. We analyse different quantities in the statistically stationary state, both through analytic and numerical methods. Our results compare favourably to field data for family sizes in several countries. We discuss the relationship between the distribution of surnames and the genetic diversity of a population.

cond-mat.stat-mech↗

arXiv2001

Replica-symmetry breaking in dynamical glasses

Systems of globally coupled logistic maps (GCLM) can display complex collective behaviour characterized by the formation of synchronous clusters. In the dynamical clustering regime, such systems possess a large number of coexisting attractors and might be viewed as dynamical glasses. Glass properties of GCLM in the thermodynamical limit of large system sizes $N$ are investigated. Replicas, representing orbits that start from various initial conditions, are introduced and distributions of their overlaps are numerically determined. We show that for fixed-field ensembles of initial conditions, as used in previous numerical studies, all attractors of the system become identical in the thermodynamical limit up to variations of order $1/\sqrt{N}$ because the initial value of the coupling field is characterized by vanishing fluctuations, and thus replica symmetry is recovered for $N\to \infty $. In contrast to this, when random-field ensembles of initial conditions are chosen, replica symmetry remains broken in the thermodynamical limit.

cond-mat.dis-nn↗

arXiv2001

Small-world behavior in a system of mobile elements

We analyze the propagation of activity in a system of mobile automata. A number r L^d of elements move as random walkers on a lattice of dimension d, while with a small probability p they can jump to any empty site in the system. We show that this system behaves as a Dynamic Small-World (DSW) and present analytic and numerical results for several quantities. Our analysis shows that the persistence time T* (equivalent to the persistence size L* of small-world networks) scales as T* ~ (r p)^(-t), with t = 1/(d+1).

cond-mat↗

arXiv2001

The shape of ecological networks

We study the statistics of ecosystems with a variable number of co-evolving species. The species interact in two ways: by prey-predator relationships and by direct competition with similar kinds. The interaction coefficients change slowly through successful adaptations and speciations. We treat them as quenched random variables. These interactions determine long-term topological features of the species network, which are found to agree with those of biological systems.

nlin.AO↗

arXiv2000

Vertical transmission of culture and the distribution of family names

A stochastic model for the evolution of a growing population is proposed, in order to explain empirical power-law distributions in the frequency of family names as a function of the family size. Preliminary results show that the predicted exponents are in good agreement with real data. The evolution of family-name distributions is discussed in the frame of vertical transmission of cultural features.

nlin.AO↗

arXiv1999

Mutual synchronization and clustering in randomly coupled chaotic dynamical networks

We introduce and study systems of randomly coupled maps (RCM) where the relevant parameter is the degree of connectivity in the system. Global (almost-) synchronized states are found (equivalent to the synchronization observed in globally coupled maps) until a certain critical threshold for the connectivity is reached. We further show that not only the average connectivity, but also the architecture of the couplings is responsible for the cluster structure observed. We analyse the different phases of the system and use various correlation measures in order to detect ordered non-synchronized states. Finally, it is shown that the system displays a dynamical hierarchical clustering which allows the definition of emerging graphs.

cond-mat↗

arXiv1999

Stochastic multiplicative processes with reset events

We study a stochastic multiplicative process with reset events. It is shown that the model develops a stationary power-law probability distribution for the relevant variable, whose exponent depends on the model parameters. Two qualitatively different regimes are observed, corresponding to intermittent and regular behaviour. In the boundary between them, the mean value of the relevant variable is time-independent, and the exponent of the stationary distribution equals -2. The addition of diffusion to the system modifies in a non-trivial way the profile of the stationary distribution. Numerical and analytical results are presented.

cond-mat↗

arXiv1999

Statistical properties of genealogical trees

We analyse the statistical properties of genealogical trees in a neutral model of a closed population with sexual reproduction and non-overlapping generations. By reconstructing the genealogy of an individual from the population evolution, we measure the distribution of ancestors appearing more than once in a given tree. After a transient time, the probability of repetition follows, up to a rescaling, a stationary distribution which we calculate both numerically and analytically. This distribution exhibits a universal shape with a non-trivial power law which can be understood by an exact, though simple, renormalization calculation. Some real data on human genealogy illustrate the problem, which is relevant to the study of the real degree of diversity in closed interbreeding communities.

cond-mat↗