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T. L. Beck

Publications and source records attributed to T. L. Beck.

At least 19 recordsLinked to original sources
arXiv2025

The edge-on disk Tau042021: icy grains at high altitudes and a wind containing astronomical PAHs

Spectra of the nearly edge-on protoplanetary disks observed with the JWST have shown ice absorption bands of varying optical depths and peculiar profiles, challenging radiative transfer modelling and our understanding of dust and ice in disks. We build models including dust grain size, shape, and composition to reproduce JWST IFU spectroscopy of the large edge-on disk Tau042021. We explore radiative transfer models using different dust grain size distributions, including grains of effective radii a_eff = 0.005-3000 microns. Scattering properties of distributions of triaxial ellipsoidal grains are calculated. We consider compositions with silicates, amorphous carbon, and mixtures of H2O, CO2, and CO. We use RADMC-3D Monte Carlo radiative transfer models of Tau042021 to simulate the spectral cubes observed with JWST-NIRSpec and MIRI. We compare the results to observations, including H2O at 3.05 microns, CO at 4.67 microns, and CO2 at 4.27 microns and to archival JWST-NIRCam and ALMA continuum images. The observed near- to mid-infrared imply dust distributions with grain sizes up to several tens of microns. The intensity distribution perpendicular to the disk exhibits emission profile wings extending into the upper disk atmosphere at altitudes exceeding the classical scale height expected in the isothermal hydrostatic limit. We produce ice map images demonstrating the presence of icy dust grains up to altitudes high above the disk midplane, more than three hydrostatic equilibrium scale heights. We demonstrate the presence of a wind containing the carriers of astronomical PAH bands. The wind appears as an X-shaped emission at 3.3, 6.2, 7.7 and 11.3 microns, characteristic wavelengths of the infrared astronomical PAH bands. We associate the spatial distribution of this component with carriers of astronomical PAH bands that form a layer of emission at the interface with the H2 wind.

astro-ph.EP↗
arXiv2024

Ice inventory towards the protostar Ced 110 IRS4 observed with the James Webb Space Telescope. Results from the ERS Ice Age program

This work focuses on the ice features toward the binary protostellar system Ced 110 IRS 4A and 4B, and observed with JWST as part of the Early Release Science Ice Age collaboration. We aim to explore the JWST observations of the binary protostellar system Ced~110~IRS4A and IRS4B to unveil and quantify the ice inventories toward these sources. We compare the ice abundances with those found for the same molecular cloud. The analysis is performed by fitting or comparing laboratory infrared spectra of ices to the observations. Spectral fits are carried out with the ENIIGMA fitting tool that searches for the best fit. For Ced~110~IRS4B, we detected the major ice species H$_2$O, CO, CO$_2$ and NH$_3$. All species are found in a mixture except for CO and CO$_2$, which have both mixed and pure ice components. In the case of Ced~110~IRS4A, we detected the same major species as in Ced~110~IRS4B, as well as the following minor species CH$_4$, SO$_2$, CH$_3$OH, OCN$^-$, NH$_4^+$ and HCOOH. Tentative detection of N$_2$O ice (7.75~$μ$m), forsterite dust (11.2~$μ$m) and CH$_3^+$ gas emission (7.18~$μ$m) in the primary source are also presented. Compared with the two lines of sight toward background stars in the Chameleon I molecular cloud, the protostar has similar ice abundances, except in the case of the ions that are higher in IRS4A. The clearest differences are the absence of the 7.2 and 7.4~$μ$m absorption features due to HCOO$^-$ and icy complex organic molecules in IRS4A and evidence of thermal processing in both IRS4A and IRS4B as probed by the CO$_2$ ice features. We conclude that the binary protostellar system Ced~110~IRS4A and IRS4B has a large inventory of icy species. The similar ice abundances in comparison to the starless regions in the same molecular cloud suggest that the chemical conditions of the protostar were set at earlier stages in the molecular cloud.

astro-ph.SR↗
arXiv2023

A JWST inventory of protoplanetary disk ices: The edge-on protoplanetary disk HH 48 NE, seen with the Ice Age ERS program

Ices are the main carriers of volatiles in protoplanetary disks and are crucial to our understanding of the chemistry that ultimately sets the organic composition of planets. The ERS program Ice Age on the JWST follows the ice evolution through all stages of star and planet formation. JWST/NIRSpec observations of the edge-on Class II protoplanetary disk HH~48~NE reveal spatially resolved absorption features of the major ice components H$_2$O, CO$_2$, CO, and multiple weaker signatures from less abundant ices NH$_3$, OCN$^-$, and OCS. Isotopologue $^{13}$CO$_2$ ice has been detected for the first time in a protoplanetary disk. Since multiple complex light paths contribute to the observed flux, the ice absorption features are filled in by ice-free scattered light. The $^{12}$CO$_2$/$^{13}$CO$_2$ ratio of 14 implies that the $^{12}$CO$_2$ feature is saturated, without the flux approaching 0, indicative of a very high CO$_2$ column density on the line of sight, and a corresponding abundance with respect to hydrogen that is higher than ISM values by a factor of at least a few. Observations of rare isotopologues are crucial, as we show that the $^{13}$CO$_2$ observation allows us to determine the column density of CO$_2$ to be at an order of magnitude higher than the lower limit directly inferred from the observed optical depth. Radial variations in ice abundance, e.g., snowlines, are significantly modified since all observed photons have passed through the full radial extent of the disk. CO ice is observed at perplexing heights in the disk, extending to the top of the CO-emitting gas layer. We argue that the most likely interpretation is that we observe some CO ice at high temperatures, trapped in less volatile ices like H$_2$O and CO$_2$. Future radiative transfer models will be required to constrain the implications on our current understanding of disk physics and chemistry.

astro-ph.EP↗
arXiv2023

JWST/NIRSpec Observations of the Planetary Mass Companion TWA 27B

We present 1-5um spectroscopy of the young planetary mass companion TWA 27B (2M1207B) performed with NIRSpec on board the James Webb Space Telescope. In these data, the fundamental band of CH_4 is absent and the fundamental band of CO is weak. The nondetection of CH_4 reinforces a previously observed trend of weaker CH_4 with younger ages among L dwarfs, which has been attributed to enhanced non-equilibrium chemistry among young objects. The weakness of CO may reflect an additional atmospheric property that varies with age, such as the temperature gradient or cloud thickness. We are able to reproduce the broad shape of the spectrum with an ATMO cloudless model that has T=1300 K, non-equilibrium chemistry, and a temperature gradient reduction caused by fingering convection. However, the fundamental bands of CH_4 and CO are somewhat stronger in the model. In addition, the model temperature of 1300 K is higher than expected from evolutionary models given the luminosity and age of TWA 27B (T=1200 K). Previous models of young L-type objects suggest that the inclusion of clouds could potentially resolve these issues; it remains to be seen whether cloudy models can provide a good fit to the 1-5um data from NIRSpec. TWA 27B exhibits emission in Paschen transitions and the He I triplet at 1.083um, which are signatures of accretion that provide the first evidence of a circumstellar disk. We have used the NIRSpec data to estimate the bolometric luminosity of TWA 27B (log L/L_sun=-4.466+/-0.014), which implies a mass of 5-6 MJup according to evolutionary models.

astro-ph.EP↗
arXiv2023

In-orbit Performance of the Near-Infrared Spectrograph NIRSpec on the James Webb Space Telescope

The Near-Infrared Spectrograph (NIRSpec) is one of the four focal plane instruments on the James Webb Space Telescope. In this paper, we summarize the in-orbit performance of NIRSpec, as derived from data collected during its commissioning campaign and the first few months of nominal science operations. More specifically, we discuss the performance of some critical hardware components such as the two NIRSpec Hawaii-2RG (H2RG) detectors, wheel mechanisms, and the micro-shutter array. We also summarize the accuracy of the two target acquisition procedures used to accurately place science targets into the slit apertures, discuss the current status of the spectro-photometric and wavelength calibration of NIRSpec spectra, and provide the as measured sensitivity in all NIRSpec science modes. Finally, we point out a few important considerations for the preparation of NIRSpec science programs.

astro-ph.IM↗
arXiv2022

The Near-Infrared Spectrograph (NIRSpec) on the James Webb Space Telescope III. Integral-field spectroscopy

The Near-Infrared Spectrograph (NIRSpec) on the James Webb Space Telescope (JWST) offers the first opportunity to use integral-field spectroscopy from space at near-infrared wavelengths. More specifically, NIRSpec's integral-field unit can obtain spectra covering the wavelength range $0.6 - 5.3~μ$m for a contiguous 3.1 arcsec $\times$ 3.2 arcsec sky area at spectral resolutions of $R \approx 100$, 1000, and 2700. In this paper we describe the optical and mechanical design of the NIRSpec integral-field spectroscopy mode, together with its expected performance. We also discuss a few recommended observing strategies, some of which are driven by the fact that NIRSpec is a multipurpose instrument with a number of different observing modes, which are discussed in companion papers. We briefly discuss the data processing steps required to produce wavelength- and flux-calibrated data cubes that contain the spatial and spectral information. Lastly, we mention a few scientific topics that are bound to benefit from this highly innovative capability offered by JWST/NIRSpec.

astro-ph.IM↗
arXiv2022

The Near-Infrared Spectrograph (NIRSpec) on the James Webb Space Telescope IV. Capabilities and predicted performance for exoplanet characterization

The Near-Inrared Spectrograph (NIRSpec) on the James Webb Space Telescope (JWST) is a very versatile instrument, offering multiobject and integral field spectroscopy with varying spectral resolution ($\sim$30 to $\sim$3000) over a wide wavelength range from 0.6 to 5.3 micron, enabling scientists to study many science themes ranging from the first galaxies to bodies in our own Solar System. In addition to its integral field unit and support for multiobject spectroscopy, NIRSpec features several fixed slits and a wide aperture specifically designed to enable high precision time-series and transit as well as eclipse observations of exoplanets. In this paper we present its capabilities regarding time-series observations, in general, and transit and eclipse spectroscopy of exoplanets in particular. Due to JWST's large collecting area and NIRSpec's excellent throughput, spectral coverage, and detector performance, this mode will allow scientists to characterize the atmosphere of exoplanets with unprecedented sensitivity.

astro-ph.IM↗
arXiv2022

The Near-Infrared Spectrograph (NIRSpec) on the James Webb Space Telescope I. Overview of the instrument and its capabilities

We provide an overview of the design and capabilities of the near-infrared spectrograph (NIRSpec) onboard the James Webb Space Telescope. NIRSpec is designed to be capable of carrying out low-resolution ($R\!=30\!-330$) prism spectroscopy over the wavelength range $0.6-5.3\!~μ$m and higher resolution ($R\!=500\!-1340$ or $R\!=1320\!-3600$) grating spectroscopy over $0.7-5.2\!~μ$m, both in single-object mode employing any one of five fixed slits, or a 3.1$\times$3.2 arcsec$^2$ integral field unit, or in multiobject mode employing a novel programmable micro-shutter device covering a 3.6$\times$3.4~arcmin$^2$ field of view. The all-reflective optical chain of NIRSpec and the performance of its different components are described, and some of the trade-offs made in designing the instrument are touched upon. The faint-end spectrophotometric sensitivity expected of NIRSpec, as well as its dependency on the energetic particle environment that its two detector arrays are likely to be subjected to in orbit are also discussed.

astro-ph.IM↗
arXiv2022

The Near-Infrared Spectrograph (NIRSpec) on the James Webb Space Telescope II. Multi-object spectroscopy (MOS)

We provide an overview of the capabilities and performance of the Near-Infrared Spectrograph (NIRSpec) on the James Webb Space Telescope (JWST) when used in its multi-object spectroscopy (MOS) mode employing a novel Micro Shutter Array (MSA) slit device. The MSA consists of four separate 98 arcsec $\times$ 91 arcsec quadrants each containing $365\times171$ individually addressable shutters whose open areas on the sky measure 0.20 arcsec $\times$ 0.46 arcsec on a 0.27 arcsec $\times$ 0.53 arcsec pitch. This is the first time that a configurable multi-object spectrograph has been available on a space mission. The levels of multiplexing achievable with NIRSpec MOS mode are quantified and we show that NIRSpec will be able to observe typically fifty to two hundred objects simultaneously with the pattern of close to a quarter of a million shutters provided by the MSA. This pattern is fixed and regular, and we identify the specific constraints that it yields for NIRSpec observation planning. We also present the data processing and calibration steps planned for the NIRSpec MOS data. The significant variation in size of the mostly diffraction-limited instrument point spread function over the large wavelength range of 0.6-5.3 $μ$m covered by the instrument, combined with the fact that most targets observed with the MSA cannot be expected to be perfectly centred within their respective slits, makes the spectrophotometric and wavelength calibration of the obtained spectra particularly complex. These challenges notwithstanding, the sensitivity and multiplexing capabilities anticipated of NIRSpec in MOS mode are unprecedented, and should enable significant progress to be made in addressing a wide range of outstanding astrophysical problems.

astro-ph.IM↗
arXiv2021

An unbiased NOEMA 2.6 to 4 mm survey of the GG Tau ring: First detection of CCS in a protoplanetary disk

Molecular line surveys are among the main tools to probe the structure and physical conditions in protoplanetary disks (PPDs), the birthplace of planets. The large radial and vertical temperature as well as density gradients in these PPDs lead to a complex chemical composition, making chemistry an important step to understand the variety of planetary systems. We aimed to study the chemical content of the protoplanetary disk surrounding GG Tau A, a well-known triple T Tauri system. We used NOEMA with the new correlator PolyFix to observe rotational lines at 2.6 to 4 mm from a few dozen molecules. We analysed the data with a radiative transfer code to derive molecular densities and the abundance relative to $^{13}$CO, which we compare to those of the TMC1 cloud and LkCa15 disk. We report the first detection of CCS in PPDs. We also marginally detect OCS and find 16 other molecules in the GG Tauri outer disk. Ten of them had been found previously, while seven others ($^{13}$CN, N$_2$H$^+$, HNC, DNC, HC$_3$N, CCS, and C$^{34}$S) are new detections in this disk. The analysis confirms that sulphur chemistry is not yet properly understood. The D/H ratio, derived from DCO$^{+}$/HCO$^{+}$, DCN/HCN, and DNC/HNC ratios, points towards a low temperature chemistry. The detection of the rare species CCS confirms that GG Tau is a good laboratory to study the protoplanetary disk chemistry, thanks to its large disk size and mass.

astro-ph.SR↗
arXiv2020

Possible evidence of ongoing planet formation in AB Aurigae. A showcase of the SPHERE/ALMA synergy

Context. Planet formation is expected to take place in the first million years of a planetary system through various processes, which remain to be tested through observations. Aims. With the recent discovery, using ALMA, of two gaseous spiral arms inside the 120 au cavity and connected to dusty spirals, the famous protoplanetary disk around AB Aurigae presents a strong incentive for investigating the mechanisms that lead to giant planet formation. A candidate protoplanet located inside a spiral arm has already been claimed in an earlier study based on the same ALMA data. Methods. We used SPHERE at the Very Large Telescope (VLT) to perform near-infrared (IR) high-contrast imaging of AB Aur in polarized and unpolarized light in order to study the morphology of the disk and search for signs of planet formation. Results. SPHERE has delivered the deepest images ever obtained for AB Aur in scattered light. Among the many structures that are yet to be understood, we identified not only the inner spiral arms, but we also resolved a feature in the form of a twist in the eastern spiral at a separation of about 30 au. The twist of the spiral is perfectly reproduced with a planet-driven density wave model when projection effects are accounted for. We measured an azimuthal displacement with respect to the counterpart of this feature in the ALMA data, which is consistent with Keplerian motion on a 4-yr baseline. Another point sxce is detected near the edge of the inner ring, which is likely the result of scattering as opposed to the direct emission from a planet photosphere. We tentatively derived mass constraints for these two features. Conclusions. The twist and its apparent orbital motion could well be the first direct evidence of a connection between a protoplanet candidate and its manifestation as a spiral imprinted in the gas and dust distributions.

astro-ph.EP↗
arXiv2012

Kinematics and Excitation of the Molecular Hydrogen Accretion Disc in NGC 1275

We report the results of high spatial and spectral resolution integral-field spectroscopy of the central ~3 x 3 arcsec^2 of the active galaxy NGC 1275 (Perseus A), based on observations with the Near-infrared Integral Field Spectrograph (NIFS) and the ALTAIR adaptive-optics system on the Gemini North telescope. The circum-nuclear disc in the inner R~50 pc of NGC 1275 is seen in both the H2 and [FeII] lines. The disc is interpreted as the outer part of a collisionally-excited turbulent accretion disc. The kinematic major axis of the disc at a position angle of 68 deg is oriented perpendicular to the radio jet. A streamer-like feature to the south-west of the disc, detected in H2 but not in [FeII], is discussed as one of possibly several molecular streamers, presumably falling into the nuclear region. Indications of an ionization structure within the disc are deduced from the HeI and Br gamma emission lines, which may partially originate from the inner portions of the accretion disc. The kinematics of these two lines agrees with the signature of the circum-nuclear disc, but both lines display a larger central velocity dispersion than the H2 line. The rovibrational H2 transitions from the core of NGC 1275 are indicative of thermal excitation caused by shocks and agree with excitation temperatures of ~1360 and ~4290 K for the lower- and higher-energy H2 transitions, respectively. The data suggest X-ray heating as the dominant excitation mechanism of [FeII] emission in the core, while fast shocks are a possible alternative. The [FeII] lines indicate an electron density of ~4000 cm^{-3}. The H2 disc is modelled using simulated NIFS data cubes of H2 emission from inclined discs in Keplerian rotation around a central mass. Assuming a disc inclination of 45 deg +/- 10 deg, the best-fitting models imply a central mass of (8^{+7}_{-2}) x 10^8 Msun. (abridged)

astro-ph.CO↗
arXiv2012

The Infrared Light Curve of SN 2011fe in M101 and the Distance to M101

We present near infra-red light curves of supernova (SN) 2011fe in M101, including 34 epochs in H band starting fourteen days before maximum brightness in the B-band. The light curve data were obtained with the WIYN High-Resolution Infrared Camera (WHIRC). When the data are calibrated using templates of other Type Ia SNe, we derive an apparent H-band magnitude at the epoch of B-band maximum of 10.85 \pm 0.04. This implies a distance modulus for M101 that ranges from 28.86 to 29.17 mag, depending on which absolute calibration for Type Ia SNe is used.

astro-ph.CO↗
arXiv2012

A Wide-Field Near-Ir H2 2.122$μ$m line survey of the Braid Nebula Star Formation Region in Cygnus OB7

Context. Outflows and jets are the first signposts of ongoing star formation processes in any molecular cloud, yet their study in optical bands provides limited results due to the large extinction present. Near-infrared unbiased wide-field observations in the H2 1-0 S(1) line at 2.122μm alleviates the problem, enabling us to detect more outflows and trace them closer to their driving sources. Aims. As part of a large-scale multi-waveband study of ongoing star formation in the Braid Nebula Star Formation region, we focus on a one square degree region that includes Lynds Dark Nebula 1003 and 1004. Our goal is to find all of the near-infrared outflows, uncover their driving sources and estimate their evolutionary phase. Methods. We use near-infrared wide-field observations obtained with WFCAM on UKIRT, in conjunction with previously-published optical and archival MM data, to search for outflows and identify their driving sources; we subsequently use colour-colour analysis to determine the evolutionary phase of each source. Results. Within a one square degree field we have identified 37 complex MHOs, most of which are new. After combining our findings with other wide-field, multi-waveband observations of the same region we were able to discern 28 outflows and at least 18 protostars. Our analysis suggests that these protostars are younger and/or more energetic than those of the Taurus-Auriga region. The outflow data enable us to suggest connection between outflow ejection and repetitive FU Ori outburst events. We also find that star formation progresses from W to E across the investigated region.

astro-ph.GA↗
arXiv2010

Identifying Bright Stars in Crowded Environments Using Velocity Dispersion Measurements, and an Application to the Center of M32

The identification of individual stars in crowded environments using photometric information alone is confounded by source confusion. However, with the addition of spectroscopic information it is possible to distinguish between blends and areas where the light is dominated by a single star using the widths of absorption features. We describe a procedure for identifying locations in kinematically hot environments where the light is dominated by a single star, and apply this method to spectra with 0.1 arcsec angular resolution covering the 2.1 - 2.3 micron interval in the central regions of M32. Targets for detailed investigation are selected as areas of localized brightness enhancement. Three locations where at least 60% of the K-band light comes from a single bright star, and another with light that is dominated by two stars with very different velocities, are identified. The dominant stars are evolving near the tip of the asymptotic giant branch (AGB), and have M5 III spectral type. The lack of a dispersion in spectral-type suggests that the upper AGB within the central arcsec of M32 has a dispersion in J-K of only a few hundreths of a magnitude, in agreement with what is seen at larger radii. One star has weaker atomic absorption lines than the others, such that [M/H] is 0.2 dex lower. Such a difference in metallicity is consistent with the metallicity dispersion inferred from the width of the AGB in M32. The use of line width to distinguish between blends involving many relatively faint stars, none of which dominate the light output, and areas that are dominated by a single intrinsically bright star could be extended to crowded environments in other nearby galaxies.

astro-ph.GA↗
arXiv2008

Probing the Central Regions of Nearby Compact Elliptical Galaxies

K-band spectroscopic observations recorded with NIFS+ALTAIR on Gemini North are used to probe the central arcsec of the compact elliptical galaxies NGC 4486B, NGC 5846A, and M32. The angular resolution of these data is ~0.1 arcsec FWHM. The central stellar contents of NGC 4486B and NGC 5846A are similar, in the sense that they occupy the same regions of the (Ca I, 12CO), (Na I, 12CO) and (13CO, 12CO) diagrams. The NGC 4486B and NGC 5846A observations depart from the sequence defined by solar neighborhood giants in the (Na I, 12CO) diagram, in a sense that is consistent with both galaxies having non-solar chemical mixtures. For comparison, the M32 data is consistent with a chemical enrichment history like that in the Galactic disk; M32 could not have formed from the stripping of a larger elliptical galaxy. The behaviour of the near-infrared line indices as a function of radius is also investigated. The radial gradients that are present in NGC 4486B and NGC 5846A at large radii break down or reverse within the central few tenths of an arcsec. Evidence is presented that the nuclear regions of NGC 4486B and NGC 5846A harbour intermediate age populations.

astro-ph↗
arXiv2006

Dynamical Mass Estimates for Incomplete Orbits: Young Multiple Stars in Taurus and Ophiuchus

We present recent measurements of the orbital motion in the binaries, DF Tau and ZZ Tau, and in the triples, Elias 12, T Tau, and V853 Oph. We observed these systems with the Fine Guidance Sensors on the Hubble Space Telescope and with adaptive optics imaging at the W. M. Keck and Gemini North Observatories. Based on our measurements and those presented in the literature, we perform preliminary orbital analyses for DF Tau, ZZ Tau, Elias 12 Na-Nb, and T Tau Sa-Sb. Because the orbital coverage in most of these systems does not yet span a sufficient portion of the orbit, we are not able to find definitive orbit solutions. By using a Monte Carlo search technique, we explored the orbital parameter space allowed by the current set of data available for each binary. We constructed weighted distributions for the total mass of the binaries derived from a large sample of possible orbits that fit the data. These mass distributions show that the total mass is already well-defined. We compute total mass estimates of 0.78 (+0.25/-0.15) Msun, 0.66 (+0.15/-0.11) Msun, 1.13 (+0.36/-0.09) Msun, and 4.13 (+1.58/-0.97) Msun for DF Tau, ZZ Tau, Elias 12 Na-Nb, and T Tau Sa-Sb respectively, using a distance of 140 pc. For Elias 12 Na-Nb, where the orbital coverage spans ~ 164 deg, we compute a preliminary orbit solution with a period of ~ 9-12 years. By including an earlier lunar occultation measurement, we also find a likely orbit solution for ZZ Tau, with a period of ~ 32 years. With additional measurements to continue mapping the orbits, the derived dynamical masses will be useful in constraining the theoretical tracks of pre-main sequence evolution.

astro-ph↗
arXiv2005

TransPath: A Computational Method to Study the Ion Transit Pathways in Membrane Channels

The finely tuned structures of membrane channels allow selective passage of ions through the available aqueous pores. In order to understand channel function, it is crucial to locate the pore and study its physical and chemical properties. Recently obtained X-ray crystal structures of bacterial chloride channel homologues reveal a complicated topology with curvilinear pores. The commonly used HOLE program encounters difficulties in studying such pores. Here we propose a new pore-searching algorithm (TransPath) which uses the Configurational Bias Monte Carlo (CBMC) method to generate transmembrane trajectories driven by both geometric and electrostatic features. The trajectories are binned into groups determined by a vector distance criterion. From each group, a representative trajectory is selected based on the Rosenbluth weight, and the geometrically optimal path is obtained by simulated annealing. Candidate ion pathways can then be determined by analysis of the radius and potential profiles. The proposed method and its implementation are illustrated using the bacterial KcsA potassium channel as an example. The procedure is then applied to the more complex structures of the bacterial E. coli ClC channel homologues.

cond-mat.soft↗