arXiv subjects

T. V. Ramakrishnan

Publications and source records attributed to T. V. Ramakrishnan.

33 records · Page 2Linked to original sources

arXiv2008

Fluctuations in protein synthesis from a single RNA template: stochastic kinetics of ribosomes

Proteins are polymerized by cyclic machines called ribosome which use their messenger RNA (mRNA) track also as the corresponding template and the process is called translation. We explore, in depth and detail, the stochastic nature of the translation. We compute various distributions associated with the translation process; one of them, namely dwell time distribution, has been measured in recent single ribosome experiments (Wen et al. Nature {\bf 452}, 598 (2008)). The form of this distribution predicted by our theory is consistent with that extracted from the experimental data. For our quantitative calculations, we use a model that captures both the mechano-chemistry of each individual ribosome as well as their steric interactions. We also demonstrate the effects of the sequence inhomogeneities of real genes on the fluctuations and noise in translation. In principle, our new predictions can be tested by carrying out {\it in-vitro} experiments.

physics.bio-ph↗

arXiv2007

Modelling colossal magnetoresistance manganites

I briefly survey here attempts to model the rich and strange behaviour of colossal magnetoresistance manganites, after outlining some of the phenomena observed in them, and describing the three relevant strong local interactions of the e_g electrons (in two different orbital states at each site), namely with Jahn-Teller phonon modes (strength g), with resident t_2g spins (ferromagnetic Hund's rule coupling J_H) and amongst each other (the Mott Hubbard correlation U) . A new two fluid model of nearly localized l polarons and band (b) electrons for low energy behaviour emerges for large g; some of its applications are mentioned here. I describe some results of strong coupling U, J_H calculations in single site DMFT (Dynamical Mean Field Theory), and show that in the wide orbital liquid regime many characteristic manganite phenomena such as an insulating ferromagnetic ground state, thermal insulator metal transition, colossal magnetoresistance (cmr), materials systematics and the observed low effective carrier density can all be understood qualitatively and quantitatively. We also discuss the two 'phase' coexistence frequently found in these systems, and show that electrostatic coulomb interactions mute lb phase separation into nanoscale electronic inhomogeneity with l regions and b puddles. Finally, some problems of current interest as well as general ones arising, eg polarons and the physics of large electron phonon coupling g in the adiabatic regime, are mentioned.

cond-mat.str-el↗

arXiv2007

Unusual doping and temperature dependence of photoemission spectra from manganites

A recent, major, puzzle in the core-level photoemission spectra of doped manganites is the observation of a 1-2 eV wide shoulder with intensity varying with temperature T as the square of the magnetization over a T scale of order 200K, an order of magnitude less than electronic energies. This is addressed and resolved here, by extending a recently proposed two electron fluid l-b model for these systems to include core-hole effects. The shoulder arises from a rapid redistribution of e_g electron density, as a function of T, between the highly localized (l) and band-like (b) states. Furthermore, our theory leads to a correspondence between spectral changes due to increasing doping and decreasing T, as experimentally observed.

cond-mat.str-el↗

arXiv2006

Coulomb Interactions and Nanoscale Electronic Inhomogeneities in Manganites

We address the issue of endemic electronic inhomogeneities in manganites using extensive simulations on a new model with Coulomb interactions amongst two electronic fluids, one localized (polaronic), the other extended (band-like), and dopant ions. The long range Coulomb interactions frustrate phase separation induced by the strong on site repulsion between the fluids. A single quantum phase ensues which is intrinsically and strongly inhomogeneous at a nano-scale, but homogeneous on meso-scales, with many characteristics (including colossal responses)that agree with experiments. This, we argue, is the origin of nanoscale inhomogeneities in manganites, rather than phase competition and disorder related effects as often proposed.

cond-mat.str-el↗

arXiv2006

Instabilities and Insulator-Metal transitions in Half-Doped Manganites induced by Magnetic-Field and Doping

We discuss the phase diagram of the two-orbital model of half-doped manganites by calculating self-consistently the Jahn-Teller (JT) distortion patterns, charge, orbital and magnetic order at zero temperature. We analyse the instabilities of these phases caused by electron or hole doping away from half-doping, or by the application of a magnetic-field. For the CE insulating phase of half-doped manganites, in the intermediate JT coupling regime, we show that there is a competition between canting of spins (which promotes mobile carriers) and polaronic self-trapping of carriers by JT defects. This results in a marked particle-hole asymmetry, with canting winning only on the electron doped side of half-doping. We also show that the CE phase undergoes a first-order transition to a ferromagnetic metallic phase when a magnetic-field is applied, with abrupt changes in the lattice distortion patterns. We discuss the factors that govern the intriguingly small scale of the transition fields. We argue that the ferromagnetic metallic phases involved have two types of charge carriers, localised and band-like, leading to an effective two-fluid model.

cond-mat.mtrl-sci↗

arXiv2004

Doping and Field-Induced Insulator-Metal Transitions in Half-Doped Manganites

We argue that many properties of the half-doped manganites may be understood in terms of a new two-(eg electron)-fluid description, which is energetically favorable at intermediate Jahn-Teller (JT) coupling. This emerges from a competition between canting of the core spins of Mn promoting mobile carriers and polaronic trapping of carriers by JT defects, in the presence of CE, orbital and charge order. We show that this explains several features of the doping and magnetic field induced insulator-metal transitions, as the particle-hole asymmetry and the smallness of the transition fields.

cond-mat.mtrl-sci↗

arXiv2003

Zero Temperature Insulator-Metal Transition in Doped Manganites

We study the transition at T=0 from a ferromagnetic insulating to a ferromagnetic metallic phase in manganites as a function of hole doping using an effective low-energy model Hamiltonian proposed by us recently. The model incorporates the quantum nature of the dynamic Jahn-Teller(JT) phonons strongly coupled to orbitally degenerate electrons as well as strong Coulomb correlation effects and leads naturally to the coexistence of localized (JT polaronic) and band-like electronic states. We study the insulator-metal transition as a function of doping as well as of the correlation strength U and JT gain in energy E_{JT}, and find, for realistic values of parameters, a ground state phase diagram in agreement with experiments. We also discuss how several other features of manganites as well as differences in behaviour among manganites can be understood in terms of our model.

cond-mat.str-el↗

arXiv2003

Theory of Manganites Exhibiting Colossal Magnetoresistance

The electronic properties of many transition metal oxide systems require new ideas concerning the behaviour of electrons in solids for their explanation. A recent example, subsequent to that of cuprate superconductors, is of rare earth manganites doped with alkaline earths, namely $Re_{1-x}A_x MnO_3$, which exhibit colossal magnetoresistance, metal insulator transition and many other poorly understood phenomena. Here we show that the strong Jahn Teller coupling between the twofold degenerate ($d_{x^2 -y^2}$ and $d_{3z^2 -r^2}$) $e_g$ orbitals of $Mn$ and lattice modes of vibration (of the oxygen octahedra surrounding the $Mn$ ions) dynamically reorganizes the former into a set of states (which we label $\ell$) which are localized with large local lattice distortion and exponentially small intersite overlap, and another set (labelled $b$) which form a broad band. This hitherto unsuspected but microscopically inevitable $coexistence$ of radically different $\ell$ and $b$ states, and their relative energies and occupation as influenced by doping $x$, temperature $T$, local Coulomb repulsion $U$ etc., underlies the unique effects seen in manganites. We present results from strong correlation calculations using the dynamical mean-field theory which accord with a variety of observations in the orbital liquid regime (say, for $0.2\stackrel{<}\sim x \stackrel{<}\sim 0.5$).We outline extensions to include intersite $\ell$ coherence and spatial correlations/long range order.

cond-mat.str-el↗

arXiv2003

Theory of Insulator Metal Transition and Colossal Magnetoresistance in Doped Manganites

The persistent proximity of insulating and metallic phases, a puzzling characterestic of manganites, is argued to arise from the self organization of the twofold degenerate e_g orbitals of Mn into localized Jahn-Teller(JT) polaronic levels and broad band states due to the large electron - JT phonon coupling present in them. We describe a new two band model with strong correlations and a dynamical mean-field theory calculation of equilibrium and transport properties. These explain the insulator metal transition and colossal magnetoresistance quantitatively, as well as other consequences of two state coexistence.

cond-mat.str-el↗

arXiv2002

Raman Scattering in charge ordered Pr_{0.63}Ca_{0.37}MnO_{3} : Anomalous Temperature Dependence of Linewidth

We report the evolution of the Raman active A_g phonon modes in the charge-ordered manganite Pr_{0.63}Ca_{0.37}MnO_{3} as a function of temperature from 300K to 25K. Our studies reveal that the linewidths of A_g(2) and A_g(4) phonons increase as temperature decreases. This anomalous temperature dependence of phonon lineshapes, seen for the first time in charge ordered manganites, can be quantitatively understood in terms of strong spin-phonon coupling involving t_{2g} spins and A_g phonons.

cond-mat.str-el↗

arXiv2002

Ground State Vortex Lattice Structures in d-wave Superconductors

We show in a realistic $d_{x^{2}-y^{2}}$ symmetry gap model for a cuprate superconductor that the clean vortex lattice has discontinuous structural transitions (at and near T=0), as a function of the magnetic field $B$ along the c-axis. The transitions arise from the singular nonlocal and anisotropic susceptibility of the $d_{x^{2}-y^{2}}$ superconductor to the perturbation caused by supercurrents associated with vortices. The susceptibility, due to virtual Dirac quasiparticle-hole excitation, is calculated carefully, and leads to a ground state transition for the triangular lattice from an orientation along one of the crystal axis to one at 45$^o$ to them, i.e, along the gap zero direction. The field scale is seen to be 5 Tesla $ \sim (Δ_{0}/ta)^{2}Φ_{0}$, where $Δ_{0}$ is the gap maximum, $t$ is the nearest neighbour hopping, $a$ is the lattice constant, and $Φ_{0}$ is the flux quantum. At much higher fields ($\sim 28T$) there is a discontinuous transition to a centred square structure. The source of the differences from existing calculations, and experimental observability are discussed, the latter especially in view of the very small (a few degrees $K$ per vortex) differences in the ground state energy.

cond-mat.supr-con↗

arXiv2000

Effective Actions and Phase Fluctuations in d-wave Superconductors

We study effective actions for order parameter fluctuations at low temperature in layered d-wave superconductors such as the cuprates. The order parameter lives on the bonds of a square lattice and has two amplitude and two phase modes associated with it. The low frequency spectral weights for amplitude and relative phase fluctuations is determined and found to be subdominant to quasiparticle contributions. The Goldstone phase mode and its coupling to density fluctuations in charged systems is treated in a gauge-invariant manner. The Gaussian phase action is used to study both the $c$-axis Josephson plasmon and the more conventional in-plane plasmon in the cuprates. We go beyond the Gaussian theory by deriving a coarse-grained quantum XY model, which incorporates important cutoff effects overlooked in previous studies. A variational analysis of this effective model shows that in the cuprates, quantum effects of phase fluctuations are important in reducing the zero temperature superfluid stiffness, but thermal effects are small for $T << T_c$.

cond-mat.supr-con↗

arXiv1999

Muon-Spin Rotation Spectra in the Mixed Phase of High-T_c Superconductors : Thermal Fluctuations and Disorder Effects

We study muon-spin rotation (muSR) spectra in the mixed phase of highly anisotropic layered superconductors, specifically Bi_2+xSr_2-xCaCu_2O_8+delta (BSCCO), by modeling the fluid and solid phases of pancake vortices using liquid-state and density functional methods. The role of thermal fluctuations in causing motional narrowing of muSR lineshapes is quantified in terms of a first-principles theory of the flux-lattice melting transition. The effects of random point pinning are investigated using a replica treatment of liquid state correlations and a replicated density functional theory. Our results indicate that motional narrowing in the pure system, although substantial, cannot account for the remarkably small linewidths obtained experimentally at relatively high fields and low temperatures. We find that satisfactory agreement with the muSR data for BSCCO in this regime can be obtained through the ansatz that this ``phase'' is characterized by frozen short-range positional correlations reflecting the structure of the liquid just above the melting transition. This proposal is consistent with recent suggestions of a ``pinned liquid'' or ``glassy'' state of pancake vortices in the presence of pinning disorder. Our results for the high-temperature liquid phase indicate that measurable linewidths may be obtained in this phase as a consequence of density inhomogeneities induced by the pinning disorder. The results presented here comprise a unified, first-principles theoretical treatment of muSR spectra in highly anisotropic layered superconductors in terms of a controlled set of approximations.

cond-mat.supr-con↗

arXiv1997

Inertial Mass of a Vortex in Cuprate Superconductors

We present here a calculation of the inertial mass of a moving vortex in cuprate superconductors. This is a poorly known basic quantity of obvious interest in vortex dynamics. The motion of a vortex causes a dipolar density distortion and an associated electric field which is screened. The energy cost of the density distortion as well as the related screened electric field contribute to the vortex mass, which is small because of efficient screening. As a preliminary, we present a discussion and calculation of the vortex mass using a microscopically derivable phase-only action functional for the far region which shows that the contribution from the far region is negligible, and that most of it arises from the (small) core region of the vortex. A calculation based on a phenomenological Ginzburg-Landau functional is performed in the core region. Unfortunately such a calculation is unreliable, the reasons for it are discussed. A credible calculation of the vortex mass thus requires a fully microscopic, non-coarse grained theory. This is developed, and results are presented for a s-wave BCS like gap, with parameters appropriate to the cuprates. The mass, about 0.5 $m_e$ per layer, for magnetic field along the $c$ axis, arises from deformation of quasiparticle states bound in the core, and screening effects mentioned above. We discuss earlier results, possible extensions to d-wave symmetry, and observability of effects dependent on the inertial mass.

cond-mat.supr-con↗

arXiv1996

The Exotic Barium Bismuthates

We review the remarkable properties, including superconductivity, charge-density-wave ordering, and metal-insulator transitions, of lead- and potassium-doped barium bismuthate. We discuss some of the early theoretical studies of these systems. Our recent theoretical work, on the negative-$U\/$, extended-Hubbard model for these systems, is also described. Both the large- and intermediate-$U\/$ regimes of this model are examined, using mean-field and random-phase approximations, particularly with a view to fitting various experimental properties of these bismuthates. On the basis of our studies, we point out possibilities for exotic physics in these systems. We also emphasize the different consequences of electronic and phonon-mediated mechanisms for the negative $U.\/$ We show that, for an electronic mechanism, the \secin \,\,phases of these bismuthates must be unique, with their transport properties {\it dominated by charge $\pm 2e$ Cooperon bound states}. This can explain the observed difference between the optical and transport gaps. We propose other experimental tests for this novel mechanism of charge transport and comment on the effects of disorder.

cond-mat↗