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Tae Hun Kim

Publications and source records attributed to Tae Hun Kim.

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Bi-MCQ: Reformulating Vision-Language Alignment for Negation Understanding

Recent vision-language models (VLMs) achieve strong zero-shot performance via large-scale image-text pretraining and have been widely adopted in medical image analysis. However, existing VLMs remain notably weak at understanding negated clinical statements, largely due to contrastive alignment objectives that treat negation as a minor linguistic variation rather than a meaning-inverting operator. In multi-label settings, prompt-based InfoNCE fine-tuning further reinforces easy-positive image-prompt alignments, limiting effective learning of disease absence. To overcome these limitations, we reformulate vision-language alignment as a conditional semantic comparison problem, which is instantiated through a bi-directional multiple-choice learning framework(Bi-MCQ). By jointly training Image-to-Text and Text-to-Image MCQ tasks with affirmative, negative, and mixed prompts, our method implements fine-tuning as conditional semantic comparison instead of global similarity maximization. We further introduce direction-specific Cross-Attention fusion modules to address asymmetric cues required by bi-directional reasoning and reduce alignment interference. Experiments on ChestXray14, Open-I, CheXpert, and PadChest show that Bi-MCQ improves negation understanding by up to 0.47 AUC over the zero-shot performance of the state-of-the-art CARZero model, while achieving up to a 0.08 absolute gain on positive-negative combined (PNC) evaluation. Additionally, Bi-MCQ reduces the affirmative-negative AUC gap by an average of 0.12 compared to InfoNCE-based fine-tuning, demonstrating that objective reformulation can substantially enhance negation understanding in medical VLMs.

cs.CV

Electrostatics of Salt-Dependent Reentrant Phase Behaviors Highlights Diverse Roles of ATP in Biomolecular Condensates

Liquid-liquid phase separation (LLPS) involving intrinsically disordered protein regions (IDRs) is a major physical mechanism for biological membraneless compartmentalization. The multifaceted electrostatic effects in these biomolecular condensates are exemplified here by experimental and theoretical investigations of the different salt- and ATP-dependent LLPSs of an IDR of messenger RNA-regulating protein Caprin1 and its phosphorylated variant pY-Caprin1, exhibiting, e.g., reentrant behaviors in some instances but not others. Experimental data are rationalized by physical modeling using analytical theory, molecular dynamics, and polymer field-theoretic simulations, indicating that interchain ion bridges enhance LLPS of polyelectrolytes such as Caprin1 and the high valency of ATP-magnesium is a significant factor for its colocalization with the condensed phases, as similar trends are observed for other IDRs. The electrostatic nature of these features complements ATP's involvement in $\pi$-related interactions and as an amphiphilic hydrotrope, underscoring a general role of biomolecular condensates in modulating ion concentrations and its functional ramifications.

q-bio.BM