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Taichi Yamamoto

Publications and source records attributed to Taichi Yamamoto.

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TopiCLEAR: Adaptive embedding clustering for interpretable topic discovery from short texts

Topic discovery is a fundamental technique for text mining that identifies abstract topics within large document collections. A recent approach to topic discovery is to cluster document or sentence embeddings, typically obtained from pre-trained language models, and represent each cluster as a topic. Despite their strong empirical performance, the design principles linking the geometry of embedding spaces to human-interpretable topic organization remain unclear. Clarifying the relationship between these geometric structures and topic interpretability is therefore a key challenge in topic discovery. In this study, we propose TopiCLEAR (Topic discovery by CLustering Embeddings with Adaptive dimensionality Reduction), a simple framework that integrates document embeddings with iterative clustering based on adaptive dimensionality reduction. TopiCLEAR is guided by the hypothesis that human-interpretable topics correspond to low-dimensional geometric structures in embedding spaces and leverages adaptive dimensionality reduction to identify them. We evaluate topic quality using a document-level approach that combines quantitative evaluation based on human-labeled data with qualitative assessment in the absence of ground-truth labels. Experiments on four benchmark datasets, covering both formal and informal texts, show that TopiCLEAR consistently achieves strong agreement with human annotations, particularly for short and informal texts. Furthermore, a case study on Twitter data demonstrates that TopiCLEAR produces more interpretable topics than Latent Dirichlet Allocation (LDA), recovering both human-annotated topic structure and coherent sub-topic structure. These results highlight the effectiveness of clustering documents in a low-dimensional topic space for topic discovery.

cs.CL

Gaussian Process Phase Interpolation for estimating the asymptotic phase of a limit cycle oscillator from time series data

Rhythmic activity commonly observed in biological systems, occurring from the cellular level to the organismic level, is typically modeled as limit cycle oscillators. Phase reduction theory serves as a useful analytical framework for elucidating the synchronization mechanism of these oscillators. Essentially, this theory describes the dynamics of a multi-dimensional nonlinear oscillator using a single variable called asymptotic phase. In order to understand and control the rhythmic phenomena in the real world, it is crucial to estimate the asymptotic phase from the observed data. In this study, we propose a new method, Gaussian Process Phase Interpolation (GPPI), for estimating the asymptotic phase from time series data. The GPPI method first evaluates the asymptotic phase on the limit cycle and subsequently estimates the asymptotic phase outside the limit cycle employing Gaussian process regression. Thanks to the high expressive power of Gaussian processes, the GPPI is capable of capturing a variety of functions. Furthermore, it is easily applicable even when the dimension of the system increases. The performance of the GPPI is tested by using simulation data from the Stuart-Landau oscillator and the Hodgkin-Huxley oscillator. The results demonstrate that the GPPI can accurately estimate the asymptotic phase even in the presence of high observation noise and strong nonlinearity. Additionally, the GPPI is demonstrated as an effective tool for data-driven phase control of a Hodgkin-Huxley oscillator. Thus, the proposed GPPI will facilitate the data-driven modeling of the limit cycle oscillators.

nlin.AO