arXiv subjects

Takahiro Nakao

Publications and source records attributed to Takahiro Nakao.

4 recordsLinked to original sources

arXiv2026

Quasi-Binarized Autoencoders: An Architecture-Independent Information Bottleneck for Medical Image Anomaly Detection

Unsupervised anomaly detection, which learns only from normal images, is a central task in medical image analysis and remains an open problem. Reconstruction-based methods pass an image through an encoder-decoder network trained on normal data and detect anomalies from the residual between the image and its reconstruction. This works only if the information passed from the encoder to the decoder is limited; otherwise the network learns an identity mapping and reconstructs anomalies too. This limit is usually imposed through architectural choices, tuned per dataset, that cannot be stated in bits. We introduce the quasi-binarizing (QB) layer, which squashes each latent element into [0, 1] and adds Laplace noise of scale 1/epsilon. Each element is then epsilon-locally differentially private, and the mutual information between an image and its reconstruction is bounded by a quantity that depends only on epsilon and the number of QB elements, whatever the encoder and decoder. Placing a QB layer on every encoder-decoder path, including all skip connections, we build QBAE, a seven-level attention U-Net with 32,768 QB elements. On the seven datasets of the MedIAnomaly benchmark, QBAE with one architecture and one configuration reaches a mean image-level AUROC of 0.828, the highest among methods that do not adapt to each dataset, and the best reported results on BraTS2021 (AUROC 0.911, pixel-level AP 0.838). The noise is kept at test time, so that every reconstruction satisfies the bound. Without input corruption, the bottleneck alone prevents identity collapse (mean AUROC 0.805 vs. 0.590). Code is available at https://github.com/hanaokalog/MedIAnomalyQB.

cs.CV↗

arXiv2025

Zero-shot 3D Segmentation of Abdominal Organs in CT Scans Using Segment Anything Model 2: Adapting Video Tracking Capabilities for 3D Medical Imaging

Objectives: To evaluate the zero-shot performance of Segment Anything Model 2 (SAM 2) in 3D segmentation of abdominal organs in CT scans, and to investigate the effects of prompt settings on segmentation results. Materials and Methods: In this retrospective study, we used a subset of the TotalSegmentator CT dataset from eight institutions to assess SAM 2's ability to segment eight abdominal organs. Segmentation was initiated from three different z-coordinate levels (caudal, mid, and cranial levels) of each organ. Performance was measured using the Dice similarity coefficient (DSC). We also analyzed the impact of "negative prompts," which explicitly exclude certain regions from the segmentation process, on accuracy. Results: 123 patients (mean age, 60.7 \pm 15.5 years; 63 men, 60 women) were evaluated. As a zero-shot approach, larger organs with clear boundaries demonstrated high segmentation performance, with mean DSCs as follows: liver 0.821 \pm 0.192, right kidney 0.862 \pm 0.212, left kidney 0.870 \pm 0.154, and spleen 0.891 \pm 0.131. Smaller organs showed lower performance: gallbladder 0.531 \pm 0.291, pancreas 0.361 \pm 0.197, and adrenal glands, right 0.203 \pm 0.222, left 0.308 \pm 0.234. The initial slice for segmentation and the use of negative prompts significantly influenced the results. By removing negative prompts from the input, the DSCs significantly decreased for six organs. Conclusion: SAM 2 demonstrated promising zero-shot performance in segmenting certain abdominal organs in CT scans, particularly larger organs. Performance was significantly influenced by input negative prompts and initial slice selection, highlighting the importance of optimizing these factors.

eess.IV↗

arXiv2023

Method for Generating Synthetic Data Combining Chest Radiography Images with Tabular Clinical Information Using Dual Generative Models

The generation of synthetic medical records using Generative Adversarial Networks (GANs) is becoming crucial for addressing privacy concerns and facilitating data sharing in the medical domain. In this paper, we introduce a novel method to create synthetic hybrid medical records that combine both image and non-image data, utilizing an auto-encoding GAN (alphaGAN) and a conditional tabular GAN (CTGAN). Our methodology encompasses three primary steps: I) Dimensional reduction of images in a private dataset (pDS) using the pretrained encoder of the αGAN, followed by integration with the remaining non-image clinical data to form tabular representations; II) Training the CTGAN on the encoded pDS to produce a synthetic dataset (sDS) which amalgamates encoded image features with non-image clinical data; and III) Reconstructing synthetic images from the image features using the alphaGAN's pretrained decoder. We successfully generated synthetic records incorporating both Chest X-Rays (CXRs) and thirteen non-image clinical variables (comprising seven categorical and six numeric variables). To evaluate the efficacy of the sDS, we designed classification and regression tasks and compared the performance of models trained on pDS and sDS against the pDS test set. Remarkably, by leveraging five times the volume of sDS for training, we achieved classification and regression results that were comparable, if slightly inferior, to those obtained using the native pDS. Our method holds promise for publicly releasing synthetic datasets without undermining the potential for secondary data usage.

eess.IV↗

arXiv2021

X2CT-FLOW: Maximum a posteriori reconstruction using a progressive flow-based deep generative model for ultra sparse-view computed tomography in ultra low-dose protocols

Ultra sparse-view computed tomography (CT) algorithms can reduce radiation exposure of patients, but those algorithms lack an explicit cycle consistency loss minimization and an explicit log-likelihood maximization in testing. Here, we propose X2CT-FLOW for the maximum a posteriori (MAP) reconstruction of a three-dimensional (3D) chest CT image from a single or a few two-dimensional (2D) projection images using a progressive flow-based deep generative model, especially for ultra low-dose protocols. The MAP reconstruction can simultaneously optimize the cycle consistency loss and the log-likelihood. The proposed algorithm is built upon a newly developed progressive flow-based deep generative model, which is featured with exact log-likelihood estimation, efficient sampling, and progressive learning. We applied X2CT-FLOW to reconstruction of 3D chest CT images from biplanar projection images without noise contamination (assuming a standard-dose protocol) and with strong noise contamination (assuming an ultra low-dose protocol). With the standard-dose protocol, our images reconstructed from 2D projected images and 3D ground-truth CT images showed good agreement in terms of structural similarity (SSIM, 0.7675 on average), peak signal-to-noise ratio (PSNR, 25.89 dB on average), mean absolute error (MAE, 0.02364 on average), and normalized root mean square error (NRMSE, 0.05731 on average). Moreover, with the ultra low-dose protocol, our images reconstructed from 2D projected images and the 3D ground-truth CT images also showed good agreement in terms of SSIM (0.7008 on average), PSNR (23.58 dB on average), MAE (0.02991 on average), and NRMSE (0.07349 on average).

eess.IV↗