Tamara Kolda | Searcharxiv

arXiv2024

Tensor Decomposition with Unaligned Observations

This paper presents a canonical polyadic (CP) tensor decomposition that addresses unaligned observations. The mode with unaligned observations is represented using functions in a reproducing kernel Hilbert space (RKHS). We introduce a versatile loss function that effectively accounts for various types of data, including binary, integer-valued, and positive-valued types. Additionally, we propose an optimization algorithm for computing tensor decompositions with unaligned observations, along with a stochastic gradient method to enhance computational efficiency. A sketching algorithm is also introduced to further improve efficiency when using the $\ell_2$ loss function. To demonstrate the efficacy of our methods, we provide illustrative examples using both synthetic data and an early childhood human microbiome dataset.

stat.ML↗

arXiv2016

Triangular Alignment (TAME): A Tensor-based Approach for Higher-order Network Alignment

Network alignment has extensive applications in comparative interactomics. Traditional approaches aim to simultaneously maximize the number of conserved edges and the underlying similarity of aligned entities. We propose a novel formulation of the network alignment problem that extends topological similarity to higher-order structures and provides a new objective function that maximizes the number of aligned substructures. This objective function corresponds to an integer programming problem, which is NP-hard. Consequently, we identify a closely related surrogate function whose maximization results in a tensor eigenvector problem. Based on this formulation, we present an algorithm called Triangular AlignMEnt (TAME), which attempts to maximize the number of aligned triangles across networks. Using a case study on the NAPAbench dataset, we show that triangular alignment is capable of producing mappings with high node correctness. We further evaluate our method by aligning yeast and human interactomes. Our results indicate that TAME outperforms the state-of-art alignment methods in terms of conserved triangles. In addition, we show that the number of conserved triangles is more significantly correlated, compared to the conserved edge, with node correctness and co-expression of edges. Our formulation and resulting algorithms can be easily extended to arbitrary motifs.

cs.CE↗