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Tanmoy Ghosh

Publications and source records attributed to Tanmoy Ghosh.

4 recordsLinked to original sources

A constitutive model for discontinuous shear thickening in epithelial tissues

The rheological properties of biological tissues, though fundamental to many physiological and pathological processes such as embryonic development, wound healing, and tumor progression, remain poorly understood. A recent study showed that the active vertex model of biological tissues exhibits discontinuous shear thickening (DST), where stress and viscosity suddenly increase at a critical shear rate. What is the mechanism of DST here? Is it another nontrivial feature of activity or an inherent property of the system? To address this, we show that the thermal vertex model also exhibits DST at a small but non-zero temperature $T$. Solid-like and liquid-like cells coexist at the stress jump, and the stress-controlled flow curves exhibit the characteristic S-shape. We then introduce a constitutive model for DST in epithelial tissues. As $p_0$ increases, the theory predicts DST, followed by continuous shear thickening (CST), and finally Newtonian behavior, consistent with simulations. DST begins at the jamming point, $p_0^m$, and the Newtonian behavior starts at $p_0^*$, where the yield stress vanishes. Both $p_0^*$ and the liquid-to-solid transition stress, $\sigma^*$, govern the DST-CST boundary. Furthermore, $p_0^*$ and $\sigma^*$ also depend on $T$. Increasing $T$ reduces $p_0^*$, narrows the shear-thickening regime, and eventually destroys DST when $p_0^* \leq p_0^m$. Thus, the primary ingredients of DST in tissue models are a finite yield stress in the unjammed regime and non-zero fluctuations, whose specific form is not important. The theory agrees well with our simulation data and also provides further testable predictions.

cond-mat.soft

An elastoplastic model approach for the relaxation dynamics of active glasses

How activity affects the glassy dynamics is crucial for several biological processes. Furthermore, active glasses offer fascinating phenomenologies, extend the scope of equilibrium glasses, and can provide novel insights into the original problem. We introduce a family of novel approaches to investigating the relaxation dynamics of active glasses via an active elastoplastic model (EPM). These approaches describe the relaxation dynamics via local plastic yielding and can provide improved insights as we can study various aspects of the system separately. Activity enters the model via three crucial features: activity-mediated plastic yielding, activated barrier crossing, and persistent rotational dynamics of the yielding direction. We first consider a minimal active EPM that adds the effect of active yielding to a thermal EPM. We show that this active EPM captures the known results of active glasses within a reasonable parameter space. The results also agree well with the analytical results for active glasses when activity is small. The minimal model breaks down at very low temperatures where other effects become important. Looking at the broader model class, we demonstrate that whereas active yielding primarily dominates the relaxation dynamics, the persistence of yielding direction governs the dynamic heterogeneity in active glasses.

cond-mat.soft

Atom probe tomography: a local probe for chemical bonds in solids

Atom probe tomography is frequently employed to characterize the elemental distribution in solids with atomic resolution. Here we review and discuss the potential of this technique to locally probe chemical bonds. Two processes characterize the bond rupture in laser-assisted field emission, the probability of molecular ions, i.e. the probability that molecular ions (PMI) are evaporated instead of single (atomic) ions, and the probability of multiple events, i.e. the correlated field-evaporation of more than a single fragment (PME) upon laser- or voltage pulse excitation. Here we demonstrate that one can clearly distinguish solids with metallic, covalent, and metavalent bonds based on their bond rupture, i.e. their PME and PMI values. Differences in the field penetration depth can largely explain these differences in bond breaking. These findings open new avenues in understanding and designing advanced materials, since they allow a quantification of bonds in solids on a nanometer scale, as will be shown for several examples. These possibilities would even justify calling the present approach bonding probe tomography (BPT).

cond-mat.mtrl-sci

Estimate of entropy generation rate can spatiotemporally resolve the active nature of cell flickering

We use the short-time inference scheme (Manikandan, Gupta and Krishnamurthy, Phys. Rev. Lett. 124, 120603, 2020), obtained within the framework of stochastic thermodynamics, to infer a lower-bound to entropy generation rate from flickering data generated by Interference Reflection Microscopy of HeLA cells. We can clearly distinguish active cell membranes from their ATP depleted selves and even spatio-temporally resolve activity down to the scale of about one $\mu$m. Our estimate of activity is model--independent.

cond-mat.soft