arXiv subjects

Tanniemola B. Liverpool

Publications and source records attributed to Tanniemola B. Liverpool.

47 records · Page 3Linked to original sources

arXiv2010

Sheared active fluids: thickening, thinning and vanishing viscosity

We analyze the behavior of a suspension of active polar particles under shear. In the absence of external forces, orientationally ordered active particles are known to exhibit a transition to a state of non-uniform polarization and spontaneous flow. Such a transition results from the interplay between elastic stresses, due to the liquid crystallinity of the suspension, and internal active stresses. In the presence of an external shear we find an extremely rich variety of phenomena, including an effective reduction (increase) in the apparent viscosity depending on the nature of the active stresses and the flow-alignment property of the particles, as well as more exotic behaviors such as a non-monotonic stress/strain-rate relation and yield stress for large activities.

cond-mat.soft↗

arXiv2008

Complex Spontaneous Flows and Concentration Banding in Active Polar Films

We study the dynamical properties of active polar liquid crystalline films. Like active nematic films, active polar films undergo a dynamical transitions to spontaneously flowing steady-states. Spontaneous flow in polar fluids is, however, always accompanied by strong concentration inhomogeneities or "banding" not seen in nematics. In addition, a spectacular property unique to polar active films is their ability to generate spontaneously oscillating and banded flows even at low activity. The oscillatory flows become increasingly complicated for strong polarity.

cond-mat.soft↗

arXiv2007

Hydrodynamic and rheology of active polar filaments

The cytoskeleton provides eukaryotic cells with mechanical support and helps them perform their biological functions. It is a network of semiflexible polar protein filaments and many accessory proteins that bind to these filaments, regulate their assembly, link them to organelles and continuously remodel the network. Here we review recent theoretical work that aims to describe the cytoskeleton as a polar continuum driven out of equilibrium by internal chemical reactions. This work uses methods from soft condensed matter physics and has led to the formulation of a general framework for the description of the structure and rheology of active suspension of polar filaments and molecular motors.

q-bio.CB↗

arXiv2007

Propulsion of a molecular machine by asymmetric distribution of reaction--products

A simple model for the reaction-driven propulsion of a small device is proposed as a model for (part of) a molecular machine in aqueous media. Motion of the device is driven by an asymmetric distribution of reaction products. The propulsive velocity of the device is calculated as well as the scale of the velocity fluctuations. The effects of hydrodynamic flow as well as a number of different scenarios for the kinetics of the reaction are addressed.

cond-mat.soft↗

arXiv2002

Anomalous fluctuations of active polar filaments

Using a simple model, we study the fluctuating dynamics of inextensible, semiflexible polar filaments interacting with active and directed force generating centres such as molecular motors. Taking into account the fact that the activity occurs on time-scales comparable to the filament relaxation time, we obtain some unexpected differences between both the steady-state and dynamical behaviour of active as compared to passive filaments. For the statics, the filaments have a {novel} length-scale dependent rigidity. Dynamically, we find strongly enhanced anomalous diffusion.

cond-mat.soft↗

arXiv2002

Organization and instabilities of entangled active polar filaments

We study the dynamics of an entangled, isotropic solution of polar filaments coupled by molecular motors which generate relative motion of the filaments in two and three dimensions. We investigate the stability of the homogeneous state for constant motor concentration taking into account excluded volume and entanglement. At low filament density the system develops a density instability, while at high filament density entanglement effects drive the instability of orientational fluctuations.

cond-mat.soft↗

arXiv2002

Conformational Instability of Rodlike Polyelectrolytes due to Counterion Fluctuations

The effective elasticity of highly charged stiff polyelectrolytes is studied in the presence of counterions, with and without added salt. The rigid polymer conformations may become unstable due to an effective attraction induced by counterion density fluctuations. Instabilities at the longest, or intermediate length scales may signal collapse to globule, or necklace states, respectively. In the presence of added-salt, a generalized electrostatic persistence length is obtained, which has a nontrivial dependence on the Debye screening length. It is also found that the onset of conformational instability is a re-entrant phenomenon as a function of polyelectrolyte length for the unscreened case, and the Debye length or salt concentration for the screened case. This may be relevant in understanding the experimentally observed re-entrant condensation of DNA.

cond-mat.soft↗

arXiv2002

Statistical mechanics of double-helical polymers

We introduce a simple geometric model for a double-stranded and double-helical polymer. We study the statistical mechanics of such polymers using both analytical techniques and simulation. Our model has a single energy-scale which determines both the bending and twisting rigidity of the polymer. The helix melts at a particular temperature T_c below which the chain has a helical structure and above which this structure is disordered. Under extension we find that for small forces, the behaviour is very similar to worm-like chain behaviour but becomes very different at higher forces.

cond-mat.soft↗

arXiv2000

Statistical mechanics of semiflexible ribbon polymers

The statistical mechanics of a ribbon polymer made up of two semiflexible chains is studied using both analytical techniques and simulation. The system is found to have a crossover transition at some finite temperature, from a type of short range order to a fundamentally different sort of short range order. In the high temperature regime, the 2-point correlation functions of the object are identical to worm-like chains, while in the low temperature regime they are different due to a twist structure. The crossover happens when the persistence length of individual strands becomes comparable to the thickness of the ribbon. In the low temperature regime, the ribbon is observed to have a novel ``kink-rod'' structure with a mutual exclusion of twist and bend in contrast to smooth worm-like chain behaviour. This is due to its anisotropic rigidity and corresponds to an {\it infinitely} strong twist-bend coupling. The double-stranded polymer is also studied in a confined geometry. It is shown that when the polymer is restricted in a particular direction to a size less than the bare persistence length of the individual strands, it develops zigzag conformations which are indicated by an oscillatory tangent-tangent correlation function in the direction of confinement. Increasing the separation of the confining plates leads to a crossover to the free behaviour, which takes place at separations close to the bare persistence length. These results are expected to be relevant for experiments which involve complexation of two or more stiff or semiflexible polymers.

cond-mat.soft↗

arXiv1999

Collapse of Stiff Polyelectrolytes due to Counterion Fluctuations

cond-mat.soft↗

arXiv1998

Renormalized Field Theory of Polyelectrolyte Solutions

We present a field-theoretic renormalization group (RG) analysis of a dilute solution of flexible, screened polyelectrolyte chains (Debye-Hueckel chains) in a polar solvent. We perform a virial expansion to calculate the scaling dependence of the Osmotic pressure on the chain density, chain size and screening length. The formalism is developed for general chain distributions and we give explicit forms for a monodisperse chain size distribution. We utilize the fact that a Debye-Hueckel chain may be mapped to a local field theory with TWO length-scales requiring the calculation of scaling functions as well as exponents to fully describe its scaling behaviour.

cond-mat.stat-mech↗