arXiv subjects

Tanya Berger-Wolf

Publications and source records attributed to Tanya Berger-Wolf.

At least 19 recordsLinked to original sources

arXiv2026

Towards Open-Ended Visual Scientific Discovery with Sparse Autoencoders

Foundation models in several scientific domains, including visual domains, learn representations that capture complex semantics from their respective fields. Despite this, most existing applications focus on pre-specified concepts or targets, excelling at confirmation but not open-ended discovery of unknown patterns. We study whether sparse autoencoders (SAEs) with heuristic feature ranking can provide a practical methodology for surfacing candidate visual features from vision foundation models for scientific discovery without concept-specific supervision. We evaluate this approach in three stages: (1) general-purpose concept rediscovery, (2) domain-specific concept rediscovery, and (3) question-driven feature ranking. On ADE20K, SAEs outperform baseline methods ($k$-means, PCA, SemiNMF) across most downstream metrics for concept rediscovery. On FishVista, the same approach recovers fine-grained fish anatomical features without concept supervision. Finally, on Heliconius butterflies, a heuristic based on the Mann-Whitney $U$ statistic consistently surfaces features corresponding to real diagnostic keys between mimic subspecies. Together, these results show that SAEs with heuristic ranking can efficiently learn and surface semantic structure in vision foundation model representations. We view this as a methodological prerequisite for open-ended visual scientific discovery: the present experiments validate feature surfacing and ranking through rediscovery, while prospective discovery of previously unknown scientific phenomena remains future work.

cs.CV↗

arXiv2026

Leveraging Latent Visual Reasoning in Silence

Latent visual reasoning involves visual evidence more directly in multimodal reasoning by inserting continuous latent tokens before textual generation. However, the necessity of these latent tokens at inference remains ambiguous. We show that replacing latent tokens with random noise or removing them completely causes little performance degradation across spatial reasoning benchmarks. Reinforcement learning further diminishes the latent generation behavior after post-training. These observations raise a central question: \textit{Is latent visual reasoning still meaningful}? We argue that its value should be measured by how effectively latent tokens guide learning, rather than whether they persist as an inference-time format. Our analysis shows that latent reasoning is unevenly favorable across question types, yet hard task-level routing for applying latent generation is brittle. Motivated by these findings, we propose an attention-based reward that encourages generated latent tokens to interact with later text tokens during RL. This reward promotes latent utilization when the latent mode is activated while preserving the flexibility to use pure-text reasoning. Experiments show that our method improves performance across perception and visual reasoning benchmarks, even when latent tokens are rarely generated after post-training. Our results highlight that, without explicit expression at inference, latent visual reasoning can shape better visual grounding and more accurate textual reasoning \textbf{in silence}. Code \& model: \href{https://github.com/ddydyd32/silent-lvr/tree/master}{\faGithub}.

cs.CV↗

arXiv2026

Beyond Flat Labels: Level-Restricted Contrastive Learning for Hierarchical Fine-Grained Vision Classification

Multimodal contrastive learning has enabled zero-shot visual classification by aligning images with textual categories. However, in hierarchically structured label spaces, existing methods often produce predictions that are inconsistent across taxonomic levels. For example, a model may predict a fine-grained category whose parent category contradicts its simultaneously predicted higher-level label. By analysis, the issue originates from false negative labels when contrastive comparison involves multiple taxonomic levels. To this end, we propose to restrict contrastive comparisons to categories within the same taxonomic level. In addition, we adopt a group-balanced design, ensuring each taxonomic level receives adequate optimization. As a result, the proposed framework improves both hierarchical consistency and classification accuracy from coarse to fine granularity. We train our model with TreeOfLife-10M based on BioCLIP and evaluate it across multiple hierarchical classification benchmarks, where the model demonstrates significantly improved hierarchical consistency in both Euclidean and hyperbolic spaces. Notably, on iNaturalist 2021 (iNat21), our method improves average accuracy across levels by 30.47% over the baseline, highlighting its effectiveness for hierarchical zero-shot classification.

cs.CV↗

arXiv2026

Autonomous UAV Navigation for Individual Wildlife Re-Identification

Reliable individual re-identification (re-ID) of wildlife is essential for population monitoring, behavioral tracking, and conservation policy evaluation, yet large-scale data collection remains labor-intensive, relying on manual efforts by ecologists or citizen scientists. We propose an autonomous drone navigation system that actively optimizes image capture for downstream re-ID, moving beyond passive aerial sensing. The system combines YOLOv11 object detection with a DINOv2-based pose classifier to guide real-time flight decisions: detecting animals, orienting to expose the lateral flank (the surface of interest for pattern-based re-ID), and approaching until the subject meets a minimum bounding-box threshold. Unlike prior drone systems that optimize for group-level behavioral video, ours targets the specific image-quality requirements of individual-identification models. We demonstrate feasibility through a case study on zebra using footage collected in Kenya, and show the approach generalizes to other species with diagnostic surface patterns, including giraffes, tigers, and elephants. Our work establishes a framework for task-aware embodied AI for ecological data collection, in which downstream re-ID requirements drive real-time perception and control.

cs.RO↗

arXiv2026

Cross-Modal Corroboration for Annotation-Free Wildlife Monitoring

Scaling wildlife monitoring for real-world conservation deployments requires automated analysis of smart sensors that operate under severe annotation scarcity. We propose leveraging expert knowledge of species activity patterns as an annotation-free validation signal for multimodal monitoring pipelines. We operationalize agreement as the alignment of independently derived hourly activity curves both with each other and with published behavioral priors-a three-way convergence that rules out shared-data confounds and dataset-internal correlation as alternative explanations. Our vision pipeline combines zero-shot species detection via BioCLIP 2, sliced inference to handle deployment-constrained camera positioning, and geometry-based geographic localization from camera trap imagery. Our acoustic pipeline detects species vocalizations via a fine-tuned classifier. We validate the pipeline on a breeding herd of Milu deer and demonstrate that both modalities independently recover activity patterns consistent with known deer behavioral ecology with minimal manual annotation. The framework applies to species detectable in both visual and acoustic modalities for which behavioral priors are documented in the literature, suggesting a practical path toward self-validating wildlife-monitoring pipelines at conservation scale.

cs.CV↗

arXiv2026

FAIR^2 Drones: An AI-Ready Standard for Cross-Domain Wildlife Drone Datasets

Animal ecology data collection using drones represents a substantial investment of time, expertise, and financial resources. Yet most existing datasets serve only a single research community, limiting interdisciplinary reuse. We propose a unified drone dataset standard, FAIR^2 Drones, that bridges ecology, robotics, and computer vision by building on existing FAIR and AI-ready data frameworks while adding essential platform metadata and annotation specifications. Our standard enables datasets to simultaneously support ecological analysis, robotics algorithm development, and computer vision benchmarking. We provide open-source validation tools, reference implementations, and multimodal extensions linking drone imagery with complementary sensors such as camera traps, GPS, and acoustics. By standardizing metadata across disciplines, this framework maximizes the scientific return on investment for costly field deployments and accelerates cross-domain collaboration in environmental monitoring.

cs.RO↗

arXiv2026

Grand Challenges for the Convergence of Computational and Citizen Science Research Workshop Report

This report is an outcome of a Computing Community Consortium (CCC) visioning workshop on Grand Challenges for the Convergence of Computational and Citizen Science Research conducted on April 8-9, 2025, in Washington, D.C. as well as through several precursor virtual input-gathering sessions. These events brought together experts across relevant disciplines to develop a research agenda that brings to fruition the above vision on how humans and machines may team up to solve some of the world's most pressing scientific problems. Citizen science delivers measurable economic and national value. Public participation in scientific research generates millions of dollars in volunteer labor value, extends government agency capacity, and directly supports federal priorities in areas such as disaster management, public health, water, energy, workforce development, and many more. At the same time, 21st-century scientific infrastructure requirements for citizen science (from hardware and cyberinfrastructure to data and computational frameworks) mirror those for computational science more generally. The distributed, collaborative, long-term, and contextual nature of citizen science makes it a demanding real-world use case for a novel robust research infrastructure that accounts for security, privacy, resource adaptability, and transparency. In this report, we outline the key findings, future research directions, and recommendations that emerged from the April 2025 CCC Grand Challenges for the Convergence of Computational and Citizen Science Research Workshop.

cs.CY↗

arXiv2026

DynaSTy: A Framework for SpatioTemporal Node Attribute Prediction in Dynamic Graphs

Accurate multistep forecasting of node-level attributes on dynamic graphs is critical for applications ranging from financial trust networks to biological networks. Existing spatiotemporal graph neural networks typically assume a static adjacency matrix. In this work, we propose an end-to-end dynamic edge-biased spatiotemporal model that ingests a multi-dimensional timeseries of node attributes and a timeseries of adjacency matrices, to predict multiple future steps of node attributes. At each time step, our transformer-based model injects the given adjacency as an adaptable attention bias, allowing the model to focus on relevant neighbors as the graph evolves. We further deploy a masked node-time pretraining objective that primes the encoder to reconstruct missing features, and train with scheduled sampling and a horizon-weighted loss to mitigate compounding error over long horizons. Unlike prior work, our model accommodates dynamic graphs that vary across input samples, enabling forecasting in multi-system settings such as brain networks across different subjects, financial systems in different contexts, or evolving social systems. Empirical results demonstrate that our method consistently outperforms strong baselines on Root Mean Squared Error (RMSE) and Mean Absolute Error (MAE).

cs.LG↗

arXiv2026

Centering Ecological Goals in Automated Identification of Individual Animals

Recognizing individual animals over time is central to many ecological and conservation questions, including estimating abundance, survival, movement, and social structure. Recent advances in automated identification from images and even acoustic data suggest that this process could be greatly accelerated, yet their promise has not translated well into ecological practice. We argue that the main barrier is not the performance of the automated methods themselves, but a mismatch between how those methods are typically developed and evaluated, and how ecological data is actually collected, processed, reviewed, and used. Future progress, therefore, will depend less on algorithmic gains alone than on recognizing that the usefulness of automated identification is grounded in ecological context: it depends on what question is being asked, what data are available, and what kinds of mistakes matter. Only by centering these questions can we move toward automated identification of individuals that is not only accurate but also ecologically useful, transparent, and trustworthy.

q-bio.PE↗

arXiv2026

Tracking Phenological Status and Ecological Interactions in a Hawaiian Cloud Forest Understory using Low-Cost Camera Traps and Visual Foundation Models

Plant phenology, the study of cyclical events such as leafing out, flowering, or fruiting, has wide ecological impacts but is broadly understudied, especially in the tropics. Image analysis has greatly enhanced remote phenological monitoring, yet capturing phenology at the individual level remains challenging. In this project, we deployed low-cost, animal-triggered camera traps at the Pu'u Maka'ala Natural Area Reserve in Hawaii to simultaneously document shifts in plant phenology and flora-faunal interactions. Using a combination of foundation vision models and traditional computer vision methods, we measure phenological trends from images comparable to on-the-ground observations without relying on supervised learning techniques. These temporally fine-grained phenology measurements from camera-trap images uncover trends that coarser traditional sampling fails to detect. When combined with detailed visitation data detected from images, these trends can begin to elucidate drivers of both plant phenology and animal ecology.

cs.CV↗

arXiv2026

BioCAP: Exploiting Synthetic Captions Beyond Labels in Biological Foundation Models

This work investigates descriptive captions as an additional source of supervision for biological multimodal foundation models. Images and captions can be viewed as complementary samples from the latent morphospace of a species, each capturing certain biological traits. Incorporating captions during training encourages alignment with this shared latent structure, emphasizing potentially diagnostic characters while suppressing spurious correlations. The main challenge, however, lies in obtaining faithful, instance-specific captions at scale. This requirement has limited the utilization of natural language supervision in organismal biology compared with many other scientific domains. We complement this gap by generating synthetic captions with multimodal large language models (MLLMs), guided by Wikipedia-derived visual information and taxon-tailored format examples. These domain-specific contexts help reduce hallucination and yield accurate, instance-based descriptive captions. Using these captions, we train BioCAP (i.e., BioCLIP with Captions), a biological foundation model that captures rich semantics and achieves strong performance in species classification and text-image retrieval. These results demonstrate the value of descriptive captions beyond labels in bridging biological images with multimodal foundation models.

cs.CV↗

arXiv2026

A continental-scale dataset of ground beetles with high-resolution images and validated morphological trait measurements

Despite the ecological significance of invertebrates, global trait databases remain heavily biased toward vertebrates and plants, limiting comprehensive ecological analyses of high-diversity groups like ground beetles. Ground beetles (Coleoptera: Carabidae) serve as critical bioindicators of ecosystem health, providing valuable insights into biodiversity shifts driven by environmental changes. While the National Ecological Observatory Network (NEON) maintains an extensive collection of carabid specimens from across the United States, these primarily exist as physical collections, restricting widespread research access and large-scale analysis. To address these gaps, we present a multimodal dataset digitizing over 13,200 NEON carabids from 30 sites spanning the continental US and Hawaii through high-resolution imaging, enabling broader access and computational analysis. The dataset includes digitally measured elytra length and width of each specimen, establishing a foundation for automated trait extraction using AI. Validated against manual measurements, our digital trait extraction achieves sub-millimeter precision, ensuring reliability for ecological and computational studies. By addressing invertebrate under-representation in trait databases, this work supports AI-driven tools for automated species identification and trait-based research, fostering advancements in biodiversity monitoring and conservation.

cs.CV↗

arXiv2025

Edge-Native, Behavior-Adaptive Drone System for Wildlife Monitoring

Wildlife monitoring with drones must balance competing demands: approaching close enough to capture behaviorally-relevant video while avoiding stress responses that compromise animal welfare and data validity. Human operators face a fundamental attentional bottleneck: they cannot simultaneously control drone operations and monitor vigilance states across entire animal groups. By the time elevated vigilance becomes obvious, an adverse flee response by the animals may be unavoidable. To solve this challenge, we present an edge-native, behavior-adaptive drone system for wildlife monitoring. This configurable decision-support system augments operator expertise with automated group-level vigilance monitoring. Our system continuously tracks individual behaviors using YOLOv11m detection and YOLO-Behavior classification, aggregates vigilance states into a real-time group stress metric, and provides graduated alerts (alert vigilance to flee response) with operator-tunable thresholds for context-specific calibration. We derive service-level objectives (SLOs) from video frame rates and behavioral dynamics: to monitor 30fps video streams in real-time, our system must complete detection and classification within 33ms per frame. Our edge-native pipeline achieves 23.8ms total inference on GPU-accelerated hardware, meeting this constraint with a substantial margin. Retrospective analysis of seven wildlife monitoring missions demonstrates detection capability and quantifies the cost of reactive control: manual piloting results in 14 seconds average adverse behavior duration with 71.9% usable frames. Our analysis reveals operators could have received actionable alerts 51s before animals fled in 57% of missions. Simulating 5-second operator intervention yields a projected performance of 82.8% usable frames with 1-second adverse behavior duration,a 93% reduction compared to manual piloting.

eess.SY↗

arXiv2025

Interpretable and Testable Vision Features via Sparse Autoencoders

To truly understand vision models, we must not only interpret their learned features but also validate these interpretations through controlled experiments. While earlier work offers either rich semantics or direct control, few post-hoc tools supply both in a single, model-agnostic procedure. We use sparse autoencoders (SAEs) to bridge this gap; each sparse feature comes with real-image exemplars that reveal its meaning and a decoding vector that can be manipulated to probe its influence on downstream task behavior. By applying our method to widely-used pre-trained vision models, we reveal meaningful differences in the semantic abstractions learned by different pre-training objectives. We then show that a single SAE trained on frozen ViT activations supports patch-level causal edits across tasks (classification and segmentation) all without retraining the ViT or task heads. These qualitative, falsifiable demonstrations position SAEs as a practical bridge between concept discovery and causal probing of vision models. We provide code, demos and models on our project website: https://osu-nlp-group.github.io/saev.

cs.CV↗

arXiv2025

SmartWilds: Multimodal Wildlife Monitoring Dataset

We present the first release of SmartWilds, a multimodal wildlife monitoring dataset. SmartWilds is a synchronized collection of drone imagery, camera trap photographs and videos, and bioacoustic recordings collected during summer 2025 at The Wilds safari park in Ohio. This dataset supports multimodal AI research for comprehensive environmental monitoring, addressing critical needs in endangered species research, conservation ecology, and habitat management. Our pilot deployment captured four days of synchronized monitoring across three modalities in a 220-acre pasture containing Pere David's deer, Sichuan takin, Przewalski's horses, as well as species native to Ohio. We provide a comparative analysis of sensor modality performance, demonstrating complementary strengths for landuse patterns, species detection, behavioral analysis, and habitat monitoring. This work establishes reproducible protocols for multimodal wildlife monitoring while contributing open datasets to advance conservation computer vision research. Future releases will include synchronized GPS tracking data from tagged individuals, citizen science data, and expanded temporal coverage across multiple seasons.

cs.CV↗

arXiv2025

BioCLIP 2: Emergent Properties from Scaling Hierarchical Contrastive Learning

Foundation models trained at scale exhibit remarkable emergent behaviors, learning new capabilities beyond their initial training objectives. We find such emergent behaviors in biological vision models via large-scale contrastive vision-language training. To achieve this, we first curate TreeOfLife-200M, comprising 214 million images of living organisms, the largest and most diverse biological organism image dataset to date. We then train BioCLIP 2 on TreeOfLife-200M to distinguish different species. Despite the narrow training objective, BioCLIP 2 yields extraordinary accuracy when applied to various biological visual tasks such as habitat classification and trait prediction. We identify emergent properties in the learned embedding space of BioCLIP 2. At the inter-species level, the embedding distribution of different species aligns closely with functional and ecological meanings (e.g., beak sizes and habitats). At the intra-species level, instead of being diminished, the intra-species variations (e.g., life stages and sexes) are preserved and better separated in subspaces orthogonal to inter-species distinctions. We provide formal proof and analyses to explain why hierarchical supervision and contrastive objectives encourage these emergent properties. Crucially, our results reveal that these properties become increasingly significant with larger-scale training data, leading to a biologically meaningful embedding space.

cs.CV↗

arXiv2025

kabr-tools: Automated Framework for Multi-Species Behavioral Monitoring

A comprehensive understanding of animal behavior ecology depends on scalable approaches to quantify and interpret complex, multidimensional behavioral patterns. Traditional field observations are often limited in scope, time-consuming, and labor-intensive, hindering the assessment of behavioral responses across landscapes. To address this, we present kabr-tools (Kenyan Animal Behavior Recognition Tools), an open-source package for automated multi-species behavioral monitoring. This framework integrates drone-based video with machine learning systems to extract behavioral, social, and spatial metrics from wildlife footage. Our pipeline leverages object detection, tracking, and behavioral classification systems to generate key metrics, including time budgets, behavioral transitions, social interactions, habitat associations, and group composition dynamics. Compared to ground-based methods, drone-based observations significantly improved behavioral granularity, reducing visibility loss by 15% and capturing more transitions with higher accuracy and continuity. We validate kabr-tools through three case studies, analyzing 969 behavioral sequences, surpassing the capacity of traditional methods for data capture and annotation. We found that, like Plains zebras, vigilance in Grevy's zebras decreases with herd size, but, unlike Plains zebras, habitat has a negligible impact. Plains and Grevy's zebras exhibit strong behavioral inertia, with rare transitions to alert behaviors and observed spatial segregation between Grevy's zebras, Plains zebras, and giraffes in mixed-species herds. By enabling automated behavioral monitoring at scale, kabr-tools offers a powerful tool for ecosystem-wide studies, advancing conservation, biodiversity research, and ecological monitoring.

cs.CV↗

arXiv2025

Optimizing Image Capture for Computer Vision-Powered Taxonomic Identification and Trait Recognition of Biodiversity Specimens

1) Biological collections house millions of specimens with digital images increasingly available through open-access platforms. However, most imaging protocols were developed for human interpretation without considering automated analysis requirements. As computer vision applications revolutionize taxonomic identification and trait extraction, a critical gap exists between current digitization practices and computational analysis needs. This review provides the first comprehensive practical framework for optimizing biological specimen imaging for computer vision applications. 2) Through interdisciplinary collaboration between taxonomists, collection managers, ecologists, and computer scientists, we synthesized evidence-based recommendations addressing fundamental computer vision concepts and practical imaging considerations. We provide immediately actionable implementation guidance while identifying critical areas requiring community standards development. 3) Our framework encompasses ten interconnected considerations for optimizing image capture for computer vision-powered taxonomic identification and trait extraction. We translate these into practical implementation checklists, equipment selection guidelines, and a roadmap for community standards development including filename conventions, pixel density requirements, and cross-institutional protocols. 4)By bridging biological and computational disciplines, this approach unlocks automated analysis potential for millions of existing specimens and guides future digitization efforts toward unprecedented analytical capabilities.

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