arXiv subjects

Tao Chen

Publications and source records attributed to Tao Chen.

At least 145 records · Page 8Linked to original sources

arXiv2025

Interaction-assisted topological pumping in few- and many-atom Rydberg arrays

Topology can imbue lattice systems with special properties, notably the presence of robust eigenstates living at their boundary. Through dimensional reduction, the robust bulk band topology of, e.g., the integer quantum Hall system can be mapped onto similarly robust charge-pumping dynamics of a topological pump living in one lower dimension. Recent studies have uncovered a rich influence of interactions on the dynamics of topological pumps in nonlinear systems, including the robust pumping of self-bound solitons. These striking observations in classical nonlinear photonics have raised a number of questions, chiefly if and how this phenomenology persists in strongly correlated quantum systems and in the few-body limit. Here, using few- and many-atom arrays, we explore how dipolar interactions impact the dynamics of topological population pumping along a Rydberg synthetic dimension. In the few-body limit, we find that dipolar interactions lead to self-bound states that are efficiently pumped along the synthetic dimension, described by an emergent pair-state topological pump. We find that this interaction-assisted pumping persists in many-atom arrays, with a sharpened dependence on the dipolar interaction strength that stems from the enhanced spatial connectivity. These Rydberg-based studies on interaction-assisted topological pumping help connect observations from classical nonlinear photonics to the few-body quantum limit and pave the way for studies of new strongly correlated quantum pumping phenomena.

cond-mat.quant-gas↗

arXiv2025

Towards an end-to-end artificial intelligence driven global weather forecasting system

The weather forecasting system is important for science and society, and significant achievements have been made in applying artificial intelligence (AI) to medium-range weather forecasting. However, existing AI-based weather forecasting models rely on analysis or reanalysis products from traditional numerical weather prediction (NWP) systems as initial conditions for making predictions. The initial states are typically generated by traditional data assimilation components, which are computationally expensive and time-consuming. Here, by cyclic training to model the steady-state background error covariance and introducing the confidence matrix to characterize the quality of observations, we present an AI-based data assimilation model, i.e., Adas, for global weather variables. Further, we combine Adas with the advanced AI-based forecasting model (i.e., FengWu) to construct an end-to-end AI-based global weather forecasting system: FengWu-Adas. We demonstrate that Adas can assimilate global conventional observations to produce high-quality analysis, enabling the system to operate stably for long term. Moreover, the system can generate accurate end-to-end weather forecasts with comparable skill to those of the IFS, demonstrating the promising potential of data-driven approaches.

physics.ao-ph↗

arXiv2025

Native 3D Editing with Full Attention

Instruction-guided 3D editing is a rapidly emerging field with the potential to broaden access to 3D content creation. However, existing methods face critical limitations: optimization-based approaches are prohibitively slow, while feed-forward approaches relying on multi-view 2D editing often suffer from inconsistent geometry and degraded visual quality. To address these issues, we propose a novel native 3D editing framework that directly manipulates 3D representations in a single, efficient feed-forward pass. Specifically, we create a large-scale, multi-modal dataset for instruction-guided 3D editing, covering diverse addition, deletion, and modification tasks. This dataset is meticulously curated to ensure that edited objects faithfully adhere to the instructional changes while preserving the consistency of unedited regions with the source object. Building upon this dataset, we explore two distinct conditioning strategies for our model: a conventional cross-attention mechanism and a novel 3D token concatenation approach. Our results demonstrate that token concatenation is more parameter-efficient and achieves superior performance. Extensive evaluations show that our method outperforms existing 2D-lifting approaches, setting a new benchmark in generation quality, 3D consistency, and instruction fidelity.

cs.CV↗

arXiv2025

Medal S: Spatio-Textual Prompt Model for Medical Segmentation

We introduce Medal S, a medical segmentation foundation model that supports native-resolution spatial and textual prompts within an end-to-end trainable framework. Unlike text-only methods lacking spatial awareness, Medal S achieves channel-wise alignment between volumetric prompts and text embeddings, mitigating inaccuracies from resolution mismatches. By preserving full 3D context, it efficiently processes multiple native-resolution masks in parallel, enhancing multi-class segmentation performance. A lightweight 3D convolutional module enables precise voxel-space refinement guided by both prompt types, supporting up to 243 classes across CT, MRI, PET, ultrasound, and microscopy modalities in the BiomedSegFM dataset. Medal S offers two prompting modes: a text-only mode, where model predictions serve as spatial prompts for self-refinement without human input, and a hybrid mode, incorporating manual annotations for enhanced flexibility. For 24-class segmentation, parallel spatial prompting reduces inference time by more than 90% compared to sequential prompting. We propose dynamic resampling to address target-patch ratio imbalance, extending SAT and nnU-Net for data augmentation. Furthermore, we develop optimized text preprocessing, a two-stage inference strategy, and post-processing techniques to improve memory efficiency, precision, and inference speed. On the five-modality average on the validation set, Medal S outperforms SAT with a DSC of 75.44 (vs. 69.83), NSD of 77.34 (vs. 71.06), F1 of 38.24 (vs. 24.88), and DSC TP of 65.46 (vs. 46.97). Medal S achieves excellent performance by harmonizing spatial precision with semantic textual guidance, demonstrating superior efficiency and accuracy in multi-class medical segmentation tasks compared to sequential prompt-based approaches. Medal S will be publicly available at https://github.com/yinghemedical/Medal-S.

cs.CV↗

arXiv2025

Light over Heavy: Automated Performance Requirements Quantification with Linguistic Inducement

Elicited performance requirements need to be quantified for compliance in different engineering tasks, e.g., configuration tuning and performance testing. Much existing work has relied on manual quantification, which is expensive and error-prone due to the imprecision. In this paper, we present LQPR, a highly efficient automatic approach for performance requirements quantification.LQPR relies on a new theoretical framework that converts quantification as a classification problem. Despite the prevalent applications of Large Language Models (LLMs) for requirement analytics, LQPR takes a different perspective to address the classification: we observed that performance requirements can exhibit strong patterns and are often short/concise, therefore we design a lightweight linguistically induced matching mechanism. We compare LQPR against nine state-of-the-art learning-based approaches over diverse datasets, demonstrating that it is ranked as the sole best for 75% or more cases with two orders less cost. Our work proves that, at least for performance requirement quantification, specialized methods can be more suitable than the general LLM-driven approaches.

cs.SE↗

arXiv2025

MotionGPT3: Human Motion as a Second Modality

With the rapid progress of large language models (LLMs), multimodal frameworks that unify understanding and generation have become promising, yet they face increasing complexity as the number of modalities and tasks grows. We observe that motion quantization introduces approximation errors that cap motion quality, and that unifying discrete text and continuous motion within a single-stream backbone amplifies cross-modal interference. Motivated by recent multi-branch Transformer designs that separate signals from different modalities, we propose MotionGPT3, a bimodal motion-language model for both understanding and generation. MotionGPT3 encodes raw motion into a continuous latent space using a variational autoencoder (VAE), thereby avoiding quantization-induced artifacts, while leveraging the semantic prior of pretrained language models. A dual-stream Transformer with shared attention preserves modality-specific routes while enabling controlled, bidirectional information flow, which reduces interference, stabilizing optimization, and empirically accelerates convergence without degrading fidelity. For multimodal joint training, a generate-then-align three-stage schedule further improves stability and limits cross-task interference. Experiments show that MotionGPT3 achieves 2x faster convergence in training loss and up to 4x faster convergence in validation, while maintaining state-of-the-art performance on standard motion understanding and motion generation benchmarks.

cs.CV↗

arXiv2025

A Self-Evolving AI Agent System for Climate Science

Scientific progress in Earth science depends on integrating data across the planet's interconnected spheres. However, the accelerating volume and fragmentation of multi-sphere knowledge and data have surpassed human analytical capacity. This creates a major bottleneck for discovery, especially in climate science. To address this challenge, we introduce EarthLink, the first self-evolving AI agent system designed as an interactive "copilot" for Earth scientists. Through natural language interaction, EarthLink automates the entire research workflow by integrating planning, code execution, data analysis, and physical reasoning into a unified process that directly addresses this limitation. Beyond efficiency, it exhibits human-like cross-disciplinary analytical ability and achieves proficiency comparable to a junior researcher in expert evaluations on core large-scale climate tasks, including model-observation comparison and climate change understanding. When tasked with an open scientific problem, specifically the discovery of precursors of the Atlantic Niño, EarthLink autonomously developed a research strategy, identified sources of predictability, verified its hypotheses with available data, and proposed a physically consistent mechanism. These emerging capabilities enable a new human-AI research paradigm. Scientists can focus on value and result judgments, while AI systems handle complex data analysis and knowledge integration. This accelerates the pace and breadth of discovery in Earth sciences. The system is accessible at our website https://earthlink.intern-ai.org.cn.

cs.LG↗

arXiv2025

Learning an Efficient Optimizer via Hybrid-Policy Sub-Trajectory Balance

Recent advances in generative modeling enable neural networks to generate weights without relying on gradient-based optimization. However, current methods are limited by issues of over-coupling and long-horizon. The former tightly binds weight generation with task-specific objectives, thereby limiting the flexibility of the learned optimizer. The latter leads to inefficiency and low accuracy during inference, caused by the lack of local constraints. In this paper, we propose Lo-Hp, a decoupled two-stage weight generation framework that enhances flexibility through learning various optimization policies. It adopts a hybrid-policy sub-trajectory balance objective, which integrates on-policy and off-policy learning to capture local optimization policies. Theoretically, we demonstrate that learning solely local optimization policies can address the long-horizon issue while enhancing the generation of global optimal weights. In addition, we validate Lo-Hp's superior accuracy and inference efficiency in tasks that require frequent weight updates, such as transfer learning, few-shot learning, domain generalization, and large language model adaptation.

cs.LG↗

arXiv2025

RegionE: Adaptive Region-Aware Generation for Efficient Image Editing

Recently, instruction-based image editing (IIE) has received widespread attention. In practice, IIE often modifies only specific regions of an image, while the remaining areas largely remain unchanged. Although these two types of regions differ significantly in generation difficulty and computational redundancy, existing IIE models do not account for this distinction, instead applying a uniform generation process across the entire image. This motivates us to propose RegionE, an adaptive, region-aware generation framework that accelerates IIE tasks without additional training. Specifically, the RegionE framework consists of three main components: 1) Adaptive Region Partition. We observed that the trajectory of unedited regions is straight, allowing for multi-step denoised predictions to be inferred in a single step. Therefore, in the early denoising stages, we partition the image into edited and unedited regions based on the difference between the final estimated result and the reference image. 2) Region-Aware Generation. After distinguishing the regions, we replace multi-step denoising with one-step prediction for unedited areas. For edited regions, the trajectory is curved, requiring local iterative denoising. To improve the efficiency and quality of local iterative generation, we propose the Region-Instruction KV Cache, which reduces computational cost while incorporating global information. 3) Adaptive Velocity Decay Cache. Observing that adjacent timesteps in edited regions exhibit strong velocity similarity, we further propose an adaptive velocity decay cache to accelerate the local denoising process. We applied RegionE to state-of-the-art IIE base models, including Step1X-Edit, FLUX.1 Kontext, and Qwen-Image-Edit. RegionE achieved acceleration factors of 2.57, 2.41, and 2.06. Evaluations by GPT-4o confirmed that semantic and perceptual fidelity were well preserved.

cs.CV↗

arXiv2025

ABACUS: An Electronic Structure Analysis Package for the AI Era

ABACUS (Atomic-orbital Based Ab-initio Computation at USTC) is an open-source software for first-principles electronic structure calculations and molecular dynamics simulations. It mainly features density functional theory (DFT) and molecular dynamics functions and is compatible with both plane-wave basis sets and numerical atomic orbital basis sets. ABACUS serves as a platform that facilitates the integration of various electronic structure methods, such as Kohn-Sham DFT, stochastic DFT, orbital-free DFT, and real-time time-dependent DFT, etc. In addition, with the aid of high-performance computing, ABACUS is designed to perform efficiently and provide massive amounts of first-principles data for generating general-purpose machine learning potentials, such as DPA models. Furthermore, ABACUS serves as an electronic structure platform that interfaces with several AI-assisted algorithms and packages, such as DeePKS-kit, DeePMD, DP-GEN, DeepH, DeePTB, HamGNN, etc.

cond-mat.mtrl-sci↗

arXiv2025

PRING: Rethinking Protein-Protein Interaction Prediction from Pairs to Graphs

Deep learning-based computational methods have achieved promising results in predicting protein-protein interactions (PPIs). However, existing benchmarks predominantly focus on isolated pairwise evaluations, overlooking a model's capability to reconstruct biologically meaningful PPI networks, which is crucial for biology research. To address this gap, we introduce PRING, the first comprehensive benchmark that evaluates protein-protein interaction prediction from a graph-level perspective. PRING curates a high-quality, multi-species PPI network dataset comprising 21,484 proteins and 186,818 interactions, with well-designed strategies to address both data redundancy and leakage. Building on this golden-standard dataset, we establish two complementary evaluation paradigms: (1) topology-oriented tasks, which assess intra and cross-species PPI network construction, and (2) function-oriented tasks, including protein complex pathway prediction, GO module analysis, and essential protein justification. These evaluations not only reflect the model's capability to understand the network topology but also facilitate protein function annotation, biological module detection, and even disease mechanism analysis. Extensive experiments on four representative model categories, consisting of sequence similarity-based, naive sequence-based, protein language model-based, and structure-based approaches, demonstrate that current PPI models have potential limitations in recovering both structural and functional properties of PPI networks, highlighting the gap in supporting real-world biological applications. We believe PRING provides a reliable platform to guide the development of more effective PPI prediction models for the community. The dataset and source code of PRING are available at https://github.com/SophieSarceau/PRING.

cs.LG↗

arXiv2025

Causally Perturbed Fairness Testing

To mitigate unfair and unethical discrimination over sensitive features (e.g., gender, age, or race), fairness testing plays an integral role in engineering systems that leverage AI models to handle tabular data. A key challenge therein is how to effectively reveal fairness bugs under an intractable sample size using perturbation. Much current work has been focusing on designing the test sample generators, ignoring the valuable knowledge about data characteristics that can help guide the perturbation and hence limiting their full potential. In this paper, we seek to bridge such a gap by proposing a generic framework of causally perturbed fairness testing, dubbed CausalFT. Through causal inference, the key idea of CausalFT is to extract the most directly and causally relevant non-sensitive feature to its sensitive counterpart, which can jointly influence the prediction of the label. Such a causal relationship is then seamlessly injected into the perturbation to guide a test sample generator. Unlike existing generator-level work, CausalFT serves as a higher-level framework that can be paired with diverse base generators. Extensive experiments on 1296 cases confirm that CausalFT can considerably improve arbitrary base generators in revealing fairness bugs over 93% of the cases with acceptable extra runtime overhead. Compared with a state-of-the-art approach that ranks the non-sensitive features solely based on correlation, CausalFT performs significantly better on 64% cases while being much more efficient. Further, CausalFT can better improve bias resilience in nearly all cases.

cs.SE↗

arXiv2025

ETA-IK: Execution-Time-Aware Inverse Kinematics for Dual-Arm Systems

This paper presents ETA-IK, a novel Execution-Time-Aware Inverse Kinematics method tailored for dual-arm robotic systems. The primary goal is to optimize motion execution time by leveraging the redundancy of both arms, specifically in tasks where only the relative pose of the robots is constrained, such as dual-arm scanning of unknown objects. Unlike traditional inverse kinematics methods that use surrogate metrics such as joint configuration distance, our method incorporates direct motion execution time and implicit collisions into the optimization process, thereby finding target joints that allow subsequent trajectory generation to get more efficient and collision-free motion. A neural network based execution time approximator is employed to predict time-efficient joint configurations while accounting for potential collisions. Through experimental evaluation on a system composed of a UR5 and a KUKA iiwa robot, we demonstrate significant reductions in execution time. The proposed method outperforms conventional approaches, showing improved motion efficiency without sacrificing positioning accuracy. These results highlight the potential of ETA-IK to improve the performance of dual-arm systems in applications, where efficiency and safety are paramount.

cs.RO↗

arXiv2025

Synergistic modulation of band structure and phonon transport for higher thermoelectric performance of WSe2

Tungsten diselenide (WSe2) emerges as a promising thermoelectric (TE) candidate due to its high thermopower (S), cost-effectiveness, and environmentally friendly characteristics. However, pristine WSe2 exhibits limited electrical conductivity (sigma), a low power factor (PF), and high lattice thermal conductivity (k_L), which restrict its overall TE performance. Here, we show that through co-doping of Nb for W and Te for Se in WSe2, its power factor increases 17-fold, reaching 8.91 microW cm^-1 K^-2 at 850 K. Simultaneously, its lattice thermal conductivity (k_L) decreases from 1.70 W m^-1 K^-1 to 0.48 W m^-1 K^-1. Experiments and density functional theory (DFT) analysis demonstrate that the enhancement of PF is linked to an increased density of states, higher effective mass (md*), improved mobility (mu), and elevated electrical conductivity (sigma) owing to the replacement of Se2- with Te2-; while the observed 72% reduction in k_L results primarily from phonon scattering at Te-Se and Nb-W defects. As a result, a remarkable ZT_max ~ 1 is obtained at 850 K for the sample W0.95Nb0.05Se2-yTey with y = 0.3, which is about a 30-fold increase compared to WSe2, proving that Nb and Te co-doping in WSe2 can significantly boost its TE performance.

cond-mat.mtrl-sci↗

arXiv2025

Breaking the Compression Ceiling: Data-Free Pipeline for Ultra-Efficient Delta Compression

With the rise of the fine-tuned-pretrained paradigm, storing numerous fine-tuned models for multi-tasking creates significant storage overhead. Delta compression alleviates this by storing only the pretrained model and the highly compressed delta weights (the differences between fine-tuned and pretrained model weights). However, existing methods fail to maintain both high compression and performance, and often rely on data. To address these challenges, we propose UltraDelta, the first data-free delta compression pipeline that achieves both ultra-high compression and strong performance. UltraDelta is designed to minimize redundancy, maximize information, and stabilize performance across inter-layer, intra-layer, and global dimensions, using three key components: (1) Variance-Based Mixed Sparsity Allocation assigns sparsity based on variance, giving lower sparsity to high-variance layers to preserve inter-layer information. (2) Distribution-Aware Compression applies uniform quantization and then groups parameters by value, followed by group-wise pruning, to better preserve intra-layer distribution. (3) Trace-Norm-Guided Rescaling uses the trace norm of delta weights to estimate a global rescaling factor, improving model stability under higher compression. Extensive experiments across (a) large language models (fine-tuned on LLaMA-2 7B and 13B) with up to 50x compression, (b) general NLP models (RoBERTa-base, T5-base) with up to 224x compression, (c) vision models (ViT-B/32, ViT-L/14) with up to 132x compression, and (d) multi-modal models (BEiT-3) with 18x compression, demonstrate that UltraDelta consistently outperforms existing methods, especially under ultra-high compression. Code is available at https://github.com/xiaohuiwang000/UltraDelta.

cs.LG↗

arXiv2025

ReMix: Towards a Unified View of Consistent Character Generation and Editing

Recent advances in large-scale text-to-image diffusion models (e.g., FLUX.1) have greatly improved visual fidelity in consistent character generation and editing. However, existing methods rarely unify these tasks within a single framework. Generation-based approaches struggle with fine-grained identity consistency across instances, while editing-based methods often lose spatial controllability and instruction alignment. To bridge this gap, we propose ReMix, a unified framework for character-consistent generation and editing. It constitutes two core components: the ReMix Module and IP-ControlNet. The ReMix Module leverages the multimodal reasoning ability of MLLMs to edit semantic features of input images and adapt instruction embeddings to the native DiT backbone without fine-tuning. While this ensures coherent semantic layouts, pixel-level consistency and pose controllability remain challenging. To address this, IP-ControlNet extends ControlNet to decouple semantic and layout cues from reference images and introduces an ε-equivariant latent space that jointly denoises the reference and target images within a shared noise space. Inspired by convergent evolution and quantum decoherence,i.e., where environmental noise drives state convergence, this design promotes feature alignment in the hidden space, enabling consistent object generation while preserving identity. ReMix supports a wide range of tasks, including personalized generation, image editing, style transfer, and multi-condition synthesis. Extensive experiments validate its effectiveness and efficiency as a unified framework for character-consistent image generation and editing.

cs.CV↗

arXiv2025

Advancing glaucoma research with multiphysics continuum mechanics modelling: Opportunities and open challenges

This review examines the emerging role of mechanistic mathematical models based on continuum mechanics to address current challenges in glaucoma research. At present, the advent of Artificial Intelligence and data-based models have resulted in significant progress in drug candidate screening, target identification and delivery optimization for glaucoma treatment. Physics-based models on the other hand offer mechanistic insight by modelling fundamental physical knowledge. Mechanistic models, and specifically those based on continuum mechanics, have the potential to contribute to a better understanding of glaucoma through the description of intraocular fluid dynamics, mass and heat transfer and other basic physical phenomena. So far, these models have expanded our understanding of ocular fluid dynamics, including descriptions of fluid flow profiles within the anterior chamber of the eye under glaucomatous conditions. With the ongoing development of multiphysics modelling frameworks, there is increasing potential to apply these tools to a wide range of current challenges within the field of glaucoma research. These challenges include glaucoma drainage devices, minimally invasive surgical procedures, therapeutic contact lenses, laser-based interventions like peripheral iridotomy, and the design and optimization of biodegradable drug-releasing intracameral implants, which support patient-specific strategies for glaucoma diagnosis and treatment

q-bio.TO↗

arXiv2025

SCI-Verifier: Scientific Verifier with Thinking

As large language models (LLMs) are increasingly applied to scientific reasoning, the complexity of answer formats and the diversity of equivalent expressions make answer verification a critical yet challenging task. Existing verification studies in scientific domains suffer from two major limitations: (a) the absence of systematic evaluation standards and insufficient disciplinary coverage, which hinders their comprehensive assessment; and (b) heavy reliance on cumbersome rule design or prompt engineering, which reduces their effectiveness in complex reasoning scenarios or limits their cross-disciplinary generalization. To address these challenges, we propose solutions at both the data and model levels. On the data side, we construct SCI-VerifyBench, a cross-disciplinary benchmark covering mathematics, physics, biology, chemistry, and general scientific QA. The benchmark is built from real LLM responses and enhanced with domain-specific equivalence transformations that generate challenging and realistic data. Model-based and expert annotations ensure both quality and diversity, enabling rigorous evaluation of verification ability. On the model side, we emphasize the importance of reasoning for verification and introduce SCI-Verifier, a unified reasoning-augmented verifier for scientific domains. Through post-training, SCI-Verifier demonstrates strong logical reasoning and equivalence judgment capabilities while maintaining concise and stable outputs. Together, SCI-VerifyBench and SCI-Verifier provide a principled framework for scientific verification, offering both systematic evaluation and practical pathways to enhance the reliability and applicability of LLMs in scientific domains.

cs.AI↗