arXiv subjects

Tao Jia

Publications and source records attributed to Tao Jia.

At least 73 records · Page 4Linked to original sources

arXiv2020

A generalized linear threshold model for an improved description of the spreading dynamics

Many spreading processes in our real-life can be considered as a complex contagion, and the linear threshold (LT) model is often applied as a very representative model for this mechanism. Despite its intensive usage, the LT model suffers several limitations in describing the time evolution of the spreading. First, the discrete-time step that captures the speed of the spreading is vaguely defined. Second, the synchronous updating rule makes the nodes infected in batches, which can not take individual differences into account. Finally, the LT model is incompatible with existing models for the simple contagion. Here we consider a generalized linear threshold (GLT) model for the continuous-time stochastic complex contagion process that can be efficiently implemented by the Gillespie algorithm. The time in this model has a clear mathematical definition and the updating order is rigidly defined. We find that the traditional LT model systematically underestimates the spreading speed and the randomness in the spreading sequence order. We also show that the GLT model works seamlessly with the susceptible-infected (SI) or susceptible-infected-recovered (SIR) model. One can easily combine them to model a hybrid spreading process in which simple contagion accumulates the critical mass for the complex contagion that leads to the global cascades. Overall, the GLT model we proposed can be a useful tool to study complex contagion, especially when studying the time evolution of the spreading.

physics.soc-ph↗

arXiv2020

Measuring similarity in co-occurrence data using ego-networks

The co-occurrence association is widely observed in many empirical data. Mining the information in co-occurrence data is essential for advancing our understanding of systems such as social networks, ecosystem, and brain network. Measuring similarity of entities is one of the important tasks, which can usually be achieved using a network-based approach. Here we show that traditional methods based on the aggregated network can bring unwanted in-directed relationship. To cope with this issue, we propose a similarity measure based on the ego network of each entity, which effectively considers the change of an entity's centrality from one ego network to another. The index proposed is easy to calculate and has a clear physical meaning. Using two different data sets, we compare the new index with other existing ones. We find that the new index outperforms the traditional network-based similarity measures, and it can sometimes surpass the embedding method. In the meanwhile, the measure by the new index is weakly correlated with those by other methods, hence providing a different dimension to quantify similarities in co-occurrence data. Altogether, our work makes an extension in the network-based similarity measure and can be potentially applied in several related tasks.

cs.IR↗

arXiv2020

The dominance of big teams in China's scientific output

Modern science is dominated by scientific productions from teams. A recent finding shows that teams with both large and small sizes are essential in research, prompting us to analyze the extent to which a country's scientific work is carried out by big/small teams. Here, using over 26 million publications from Web of Science, we find that China's research output is more dominated by big teams than the rest of the world, which is particularly the case in fields of natural science. Despite the global trend that more papers are done by big teams, China's drop in small team output is much steeper. As teams in China shift from small to large size, the team diversity that is essential for innovative works does not increase as much as that in other countries. Using the national average as the baseline, we find that the National Natural Science Foundation of China (NSFC) supports fewer small team works than the National Science Foundation of U.S. (NSF) does, implying that big teams are more preferred by grant agencies in China. Our finding provides new insights into the concern of originality and innovation in China, which urges a need to balance small and big teams.

cs.DL↗

arXiv2019

Verification of Short-Range Order and Its Impact on the Properties of the CrCoNi Medium Entropy Alloy

Traditional metallic alloys are mixtures of elements where the atoms of minority species tend to distribute randomly if they are below their solubility limit, or lead to the formation of secondary phases if they are above it. Recently, the concept of medium/high entropy alloys (MEA/HEA) has expanded this view, as these materials are single-phase solid solutions of generally equiatomic mixtures of metallic elements that have been shown to display enhanced mechanical properties. However, the question has remained as to how random these solid solutions actually are, with the influence of chemical short-range order (SRO) suggested in computational simulations but not seen experimentally. Here we report the first direct observation of SRO in the CrCoNi MEA using high resolution and energy-filtered transmission electron microscopy. Increasing amounts of SRO give rise to both higher stacking fault energy and hardness. These discoveries suggest that the degree of chemical ordering at the nanometer scale can be tailored through thermomechanical processing, providing a new avenue for tuning the mechanical properties of MEA/HEAs.

cond-mat.mtrl-sci↗

arXiv2019

Visualizing Exotic Orbital Texture in the Single-Layer Mott Insulator 1T-TaSe2

Mott insulating behavior is induced by strong electron correlation and can lead to exotic states of matter such as unconventional superconductivity and quantum spin liquids. Recent advances in van der Waals material synthesis enable the exploration of novel Mott systems in the two-dimensional limit. Here we report characterization of the local electronic properties of single- and few-layer 1T-TaSe2 via spatial- and momentum-resolved spectroscopy involving scanning tunneling microscopy and angle-resolved photoemission. Our combined experimental and theoretical study indicates that electron correlation induces a robust Mott insulator state in single-layer 1T-TaSe2 that is accompanied by novel orbital texture. Inclusion of interlayer coupling weakens the insulating phase in 1T-TaSe2, as seen by strong reduction of its energy gap and quenching of its correlation-driven orbital texture in bilayer and trilayer 1T-TaSe2. Our results establish single-layer 1T-TaSe2 as a useful new platform for investigating strong correlation physics in two dimensions.

cond-mat.str-el↗

arXiv2018

Dichotomy of the Photo Induced 2-Dimensional Electron Gas on SrTiO$_3$ Surface Terminations

Oxide materials are important candidates for the next generation of electronics due to a wide array of desired properties which they can exhibit alone or when combined with other materials. While SrTiO$_3$ (STO) is often considered a prototypical oxide, it too hosts a wide array of unusual properties including a two dimensional electron gas (2DEG) which can form at the surface when exposed to UV light. Using layer-by-layer growth of high quality STO films, we show that the 2DEG only forms with the SrO termination and not with the TiO$_2$ termination, contrary to expectation. This behavior is similarly seen in BaTiO$_3$ (BTO), in which the 2DEG is only observed for BaO terminated films. These results will allow for a deeper understanding, and better control, of the electronic structure of titanate films, substrates and heterostructures.

cond-mat.str-el↗

arXiv2018

Suppression of Charge Density Wave by Substrate Induced Doping on TiSe$_2$/TiO$_2$ Heterostructure

Substrate engineering provides an opportunity to modulate the physical properties of quantum materials in thin film form. Here we report that TiSe$_2$ thin films grown on TiO$_2$ have unexpectedly large electron doping that suppresses the charge density wave (CDW) order. This is dramatically different from either bulk single crystal TiSe$_2$ or TiSe$_2$ thin films on graphene. The epitaxial TiSe$_2$ thin films can be prepared on TiO$_2$ via molecular beam epitaxy (MBE) in two ways: by conventional co-deposition using selenium and titanium sources, and by evaporating only selenium on reconstructed TiO$_2$ surfaces. Both growth methods yield atomically flat thin films with similar physical properties. The electron doping and subsequent suppression of CDW order can be explained by selenium vacancies in the TiSe$_2$ film, which naturally occur when TiO$_2$ substrates are used. This is due to the stronger interfacial bonding that changes the ideal growth conditions. Our finding provides a way to tune the chemical potential of chalcogenide thin films via substrate selection and engineering.

cond-mat.str-el↗

arXiv2017

Quantifying patterns of research interest evolution

Our quantitative understanding of how scientists choose and shift their research focus over time is highly consequential, because it affects the ways in which scientists are trained, science is funded, knowledge is organized and discovered, and excellence is recognized and rewarded. Despite extensive investigations of various factors that influence a scientist's choice of research topics, quantitative assessments of mechanisms that give rise to macroscopic patterns characterizing research interest evolution of individual scientists remain limited. Here we perform a large-scale analysis of publication records, finding that research interest change follows a reproducible pattern characterized by an exponential distribution. We identify three fundamental features responsible for the observed exponential distribution, which arise from a subtle interplay between exploitation and exploration in research interest evolution. We develop a random walk based model, allowing us to accurately reproduce the empirical observations. This work presents a quantitative analysis of macroscopic patterns governing research interest change, discovering a high degree of regularity underlying scientific research and individual careers.

physics.soc-ph↗

arXiv2016

Ubiquitous strong electron phonon coupling at the interface of FeSe/SrTiO3

The high temperature superconductivity in single-unit-cell (1UC) FeSe on SrTiO3 (STO)(001) and the observation of replica bands by angle-resolved photoemission spectroscopy (ARPES) have led to the conjecture that the coupling between FeSe electron and the STO phonon is responsible for the enhancement of Tc over other FeSe-based superconductors1,2. However the recent observation of a similar superconducting gap in FeSe grown on the (110) surface of STO raises the question of whether a similar mechanism applies3,4. Here we report the ARPES study of the electronic structure of FeSe grown on STO(110). Similar to the results in FeSe/STO(001), clear replica bands are observed. We also present a comparative study of STO (001) and STO(110) bare surfaces, where photo doping generates metallic surface states. Similar replica bands separating from the main band by approximately the same energy are observed, indicating this coupling is a generic feature of the STO surfaces and interfaces. Our findings suggest that the large superconducting gaps observed in FeSe films grown on two different STO surface terminations are likely enhanced by a common coupling between FeSe electrons and STO phonons.

cond-mat.supr-con↗

arXiv2016

Universal Substrate Effect on the Superconductivity of FeSe Monolayer Films

To elucidate the mechanisms behind the enhanced $T_c$ in monolayer (1ML) FeSe on SrTiO$_3$ (STO), we grew highly strained 1ML FeSe on the rectangular (100) face of rutile TiO$_2$, and observed the coexistence of replica bands and superconductivity with a $T_c$ of 63 K. From the similar $T_c$ between this system and 1ML FeSe on STO (001), we conclude that strain and dielectric constant are likely unimportant to the enhanced $T_c$ in these systems. A systematic comparison of 1ML FeSe on TiO$_2$ with other systems in the FeSe family shows that while charge transfer alone can enhance $T_c$, it is only with the addition of interfacial electron-phonon coupling that $T_c$ can be increased to the level seen in 1ML FeSe on STO.

cond-mat.supr-con↗

arXiv2015

An Analysis of the Matching Hypothesis in Networks

The matching hypothesis in social psychology claims that people are more likely to form a committed relationship with someone equally attractive. Previous works on stochastic models of human mate choice process indicate that patterns supporting the matching hypothesis could occur even when similarity is not the primary consideration in seeking partners. Yet, most if not all of these works concentrate on fully-connected systems. Here we extend the analysis to networks. Our results indicate that the correlation of the couple's attractiveness grows monotonically with the increased average degree and decreased degree diversity of the network. This correlation is lower in sparse networks than in fully-connected systems, because in the former less attractive individuals who find partners are likely to be coupled with ones who are more attractive than them. The chance of failing to be matched decreases exponentially with both the attractiveness and the degree. The matching hypothesis may not hold when the degree-attractiveness correlation is present, which can give rise to negative attractiveness correlation. Finally, we find that the ratio between the number of matched couples and the size of the maximum matching varies non-monotonically with the average degree of the network. Our results reveal the role of network topology in the process of human mate choice and bring insights into future investigations of different matching processes in networks.

physics.soc-ph↗

arXiv2015

Emergence of bimodality in controlling complex networks

Our ability to control complex systems is a fundamental challenge of contemporary science. Recently introduced tools to identify the driver nodes, nodes through which we can achieve full control, predict the existence of multiple control configurations, prompting us to classify each node in a network based on their role in control. Accordingly a node is critical, intermittent or redundant if it acts as a driver node in all, some or none of the control configurations. Here we develop an analytical framework to identify the category of each node, leading to the discovery of two distinct control modes in complex systems: centralized vs distributed control. We predict the control mode for an arbitrary network and show that one can alter it through small structural perturbations. The uncovered bimodality has implications from network security to organizational research and offers new insights into the dynamics and control of complex systems.

physics.soc-ph↗

arXiv2013

Scaling of Geographic Space as a Universal Rule for Map Generalization

Map generalization is a process of producing maps at different levels of detail by retaining essential properties of the underlying geographic space. In this paper, we explore how the map generalization process can be guided by the underlying scaling of geographic space. The scaling of geographic space refers to the fact that in a geographic space small things are far more common than large ones. In the corresponding rank-size distribution, this scaling property is characterized by a heavy tailed distribution such as a power law, lognormal, or exponential function. In essence, any heavy tailed distribution consists of the head of the distribution (with a low percentage of vital or large things) and the tail of the distribution (with a high percentage of trivial or small things). Importantly, the low and high percentages constitute an imbalanced contrast, e.g., 20 versus 80. We suggest that map generalization is to retain the objects in the head and to eliminate or aggregate those in the tail. We applied this selection rule or principle to three generalization experiments, and found that the scaling of geographic space indeed underlies map generalization. We further relate the universal rule to Töpfer's radical law (or trained cartographers' decision making in general), and illustrate several advantages of the universal rule. Keywords: Head/tail division rule, head/tail breaks, heavy tailed distributions, power law, and principles of selection

physics.data-an↗

arXiv2011

Exploring Human Mobility Patterns Based on Location Information of US Flights

A range of early studies have been conducted to illustrate human mobility patterns using different tracking data, such as dollar notes, cell phones and taxicabs. Here, we explore human mobility patterns based on massive tracking data of US flights. Both topological and geometric properties are examined in detail. We found that topological properties, such as traffic volume (between airports) and degree of connectivity (of individual airports), including both in- and outdegrees, follow a power law distribution but not a geometric property like travel lengths. The travel lengths exhibit an exponential distribution rather than a power law with an exponential cutoff as previous studies illustrated. We further simulated human mobility on the established topologies of airports with various moving behaviors and found that the mobility patterns are mainly attributed to the underlying binary topology of airports and have little to do with other factors, such as moving behaviors and geometric distances. Apart from the above findings, this study adopts the head/tail division rule, which is regularity behind any heavy-tailed distribution for extracting individual airports. The adoption of this rule for data processing constitutes another major contribution of this paper. Keywords: scaling of geographic space, head/tail division rule, power law, geographic information, agent-based simulations

physics.data-an↗

arXiv2011

On the structural properties of small-world networks with finite range of shortcut links

We explore a new variant of Small-World Networks (SWNs), in which an additional parameter ($r$) sets the length scale over which shortcuts are uniformly distributed. When $r=0$ we have an ordered network, whereas $r=1$ corresponds to the original SWN model. These short-range SWNs have a similar degree distribution and scaling properties as the original SWN model. We observe the small-world phenomenon for $r \ll 1$ indicating that global shortcuts are not necessary for the small-world effect. For short-range SWNs, the average path length changes nonmonotonically with system size, whereas for the original SWN model it increases monotonically. We propose an expression for the average path length for short-range SWNs based on numerical simulations and analytical approximations.

physics.soc-ph↗

arXiv2011

Connecting protein and mRNA burst distributions for stochastic models of gene expression

The intrinsic stochasticity of gene expression can lead to large variability in protein levels for genetically identical cells. Such variability in protein levels can arise from infrequent synthesis of mRNAs which in turn give rise to bursts of protein expression. Protein expression occurring in bursts has indeed been observed experimentally and recent studies have also found evidence for transcriptional bursting, i.e. production of mRNAs in bursts. Given that there are distinct experimental techniques for quantifying the noise at different stages of gene expression, it is of interest to derive analytical results connecting experimental observations at different levels. In this work, we consider stochastic models of gene expression for which mRNA and protein production occurs in independent bursts. For such models, we derive analytical expressions connecting protein and mRNA burst distributions which show how the functional form of the mRNA burst distribution can be inferred from the protein burst distribution. Additionally, if gene expression is repressed such that observed protein bursts arise only from single mRNAs, we show how observations of protein burst distributions (repressed and unrepressed) can be used to completely determine the mRNA burst distribution. Assuming independent contributions from individual bursts, we derive analytical expressions connecting means and variances for burst and steady-state protein distributions. Finally, we validate our general analytical results by considering a specific reaction scheme involving regulation of protein bursts by small RNAs. For a range of parameters, we derive analytical expressions for regulated protein distributions that are validated using stochastic simulations. The analytical results obtained in this work can thus serve as useful inputs for a broad range of studies focusing on stochasticity in gene expression.

physics.bio-ph↗

arXiv2011

Regulation by small RNAs via coupled degradation: mean-field and variational approaches

Regulatory genes called small RNAs (sRNAs) are known to play critical roles in cellular responses to changing environments. For several sRNAs, regulation is effected by coupled stoichiometric degradation with messenger RNAs (mRNAs). The nonlinearity inherent in this regulatory scheme indicates that exact analytical solutions for the corresponding stochastic models are intractable. Here, we present a variational approach to analyze a well-studied stochastic model for regulation by sRNAs via coupled degradation. The proposed approach is efficient and provides accurate estimates of mean mRNA levels as well as higher order terms. Results from the variational ansatz are in excellent agreement with data from stochastic simulations for a wide range of parameters, including regions of parameter space where mean-field approaches break down. The proposed approach can be applied to quantitatively model stochastic gene expression in complex regulatory networks.

physics.bio-ph↗

arXiv2011

Stochastic modeling of regulation of gene expression by multiple small RNAs

A wealth of new research has highlighted the critical roles of small RNAs (sRNAs) in diverse processes such as quorum sensing and cellular responses to stress. The pathways controlling these processes often have a central motif comprising of a master regulator protein whose expression is controlled by multiple sRNAs. However, the regulation of stochastic gene expression of a single target gene by multiple sRNAs is currently not well understood. To address this issue, we analyze a stochastic model of regulation of gene expression by multiple sRNAs. For this model, we derive exact analytic results for the regulated protein distribution including compact expressions for its mean and variance. The derived results provide novel insights into the roles of multiple sRNAs in fine-tuning the noise in gene expression. In particular, we show that, in contrast to regulation by a single sRNA, multiple sRNAs provide a mechanism for independently controlling the mean and variance of the regulated protein distribution.

q-bio.MN↗