arXiv subjects

Tao Tan

Publications and source records attributed to Tao Tan.

At least 73 records · Page 4Linked to original sources

arXiv2024

Synergy-Guided Regional Supervision of Pseudo Labels for Semi-Supervised Medical Image Segmentation

Semi-supervised learning has received considerable attention for its potential to leverage abundant unlabeled data to enhance model robustness. Pseudo labeling is a widely used strategy in semi supervised learning. However, existing methods often suffer from noise contamination, which can undermine model performance. To tackle this challenge, we introduce a novel Synergy-Guided Regional Supervision of Pseudo Labels (SGRS-Net) framework. Built upon the mean teacher network, we employ a Mix Augmentation module to enhance the unlabeled data. By evaluating the synergy before and after augmentation, we strategically partition the pseudo labels into distinct regions. Additionally, we introduce a Region Loss Evaluation module to assess the loss across each delineated area. Extensive experiments conducted on the LA dataset have demonstrated superior performance over state-of-the-art techniques, underscoring the efficiency and practicality of our framework.

cs.CV↗

arXiv2024

PEAR: Position-Embedding-Agnostic Attention Re-weighting Enhances Retrieval-Augmented Generation with Zero Inference Overhead

Large language models (LLMs) enhanced with retrieval-augmented generation (RAG) have introduced a new paradigm for web search. However, the limited context awareness of LLMs degrades their performance on RAG tasks. Existing methods to enhance context awareness are often inefficient, incurring time or memory overhead during inference, and many are tailored to specific position embeddings. In this paper, we propose Position-Embedding-Agnostic attention Re-weighting (PEAR), which enhances the context awareness of LLMs with zero inference overhead. Specifically, on a proxy task focused on context copying, we first detect heads which suppress the models' context awareness thereby diminishing RAG performance. To weaken the impact of these heads, we re-weight their outputs with learnable coefficients. The LLM (with frozen parameters) is optimized by adjusting these coefficients to minimize loss on the proxy task. As a result, the coefficients are optimized to values less than one, thereby reducing their tendency to suppress RAG performance. During inference, the optimized coefficients are fixed to re-weight these heads, regardless of the specific task at hand. Our proposed PEAR offers two major advantages over previous approaches: (1) It introduces zero additional inference overhead in terms of memory usage or inference time, while outperforming competitive baselines in accuracy and efficiency across various RAG tasks. (2) It is independent of position embedding algorithms, ensuring broader applicability.

cs.CL↗

arXiv2024

MobileVLM: A Vision-Language Model for Better Intra- and Inter-UI Understanding

Recently, mobile AI agents based on VLMs have been gaining increasing attention. These works typically utilize VLM as a foundation, fine-tuning it with instruction-based mobile datasets. However, these VLMs are typically pre-trained on general-domain data, which often results in a lack of fundamental capabilities specific to the mobile domain. Therefore, they may struggle to recognize specific UI elements and understand intra-UI fine-grained information. In addition, the current fine-tuning task focuses on interacting with the most relevant element for the given instruction. These fine-tuned VLMs may still ignore the relationships between UI pages, neglect the roles of elements in page transitions and lack inter-UI understanding. To address issues, we propose a VLM called MobileVLM, which includes two additional pre-training stages to enhance both intra- and inter-UI understanding. We defined four UI-based pre-training tasks, enabling the model to better perceive fine-grained elements and capture page transition actions. To address the lack of mobile pre-training data, we built a large Chinese mobile dataset Mobile3M from scratch, which contains 3 million UI pages, and real-world transition actions, forming a directed graph structure. Experimental results show MobileVLM excels on both our test set and public mobile benchmarks, outperforming existing VLMs.

cs.CL↗

arXiv2024

Ordinal Learning: Longitudinal Attention Alignment Model for Predicting Time to Future Breast Cancer Events from Mammograms

Precision breast cancer (BC) risk assessment is crucial for developing individualized screening and prevention. Despite the promising potential of recent mammogram (MG) based deep learning models in predicting BC risk, they mostly overlook the 'time-to-future-event' ordering among patients and exhibit limited explorations into how they track history changes in breast tissue, thereby limiting their clinical application. In this work, we propose a novel method, named OA-BreaCR, to precisely model the ordinal relationship of the time to and between BC events while incorporating longitudinal breast tissue changes in a more explainable manner. We validate our method on public EMBED and inhouse datasets, comparing with existing BC risk prediction and time prediction methods. Our ordinal learning method OA-BreaCR outperforms existing methods in both BC risk and time-to-future-event prediction tasks. Additionally, ordinal heatmap visualizations show the model's attention over time. Our findings underscore the importance of interpretable and precise risk assessment for enhancing BC screening and prevention efforts. The code will be accessible to the public.

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arXiv2024

UniUSNet: A Promptable Framework for Universal Ultrasound Disease Prediction and Tissue Segmentation

Ultrasound is widely used in clinical practice due to its affordability, portability, and safety. However, current AI research often overlooks combined disease prediction and tissue segmentation. We propose UniUSNet, a universal framework for ultrasound image classification and segmentation. This model handles various ultrasound types, anatomical positions, and input formats, excelling in both segmentation and classification tasks. Trained on a comprehensive dataset with over 9.7K annotations from 7 distinct anatomical positions, our model matches state-of-the-art performance and surpasses single-dataset and ablated models. Zero-shot and fine-tuning experiments show strong generalization and adaptability with minimal fine-tuning. We plan to expand our dataset and refine the prompting mechanism, with model weights and code available at (https://github.com/Zehui-Lin/UniUSNet).

cs.CV↗

arXiv2024

TRRG: Towards Truthful Radiology Report Generation With Cross-modal Disease Clue Enhanced Large Language Model

The vision-language modeling capability of multi-modal large language models has attracted wide attention from the community. However, in medical domain, radiology report generation using vision-language models still faces significant challenges due to the imbalanced data distribution caused by numerous negated descriptions in radiology reports and issues such as rough alignment between radiology reports and radiography. In this paper, we propose a truthful radiology report generation framework, namely TRRG, based on stage-wise training for cross-modal disease clue injection into large language models. In pre-training stage, During the pre-training phase, contrastive learning is employed to enhance the ability of visual encoder to perceive fine-grained disease details. In fine-tuning stage, the clue injection module we proposed significantly enhances the disease-oriented perception capability of the large language model by effectively incorporating the robust zero-shot disease perception. Finally, through the cross-modal clue interaction module, our model effectively achieves the multi-granular interaction of visual embeddings and an arbitrary number of disease clue embeddings. This significantly enhances the report generation capability and clinical effectiveness of multi-modal large language models in the field of radiology reportgeneration. Experimental results demonstrate that our proposed pre-training and fine-tuning framework achieves state-of-the-art performance in radiology report generation on datasets such as IU-Xray and MIMIC-CXR. Further analysis indicates that our proposed method can effectively enhance the model to perceive diseases and improve its clinical effectiveness.

cs.CV↗

arXiv2024

DIffSteISR: Harnessing Diffusion Prior for Superior Real-world Stereo Image Super-Resolution

We introduce DiffSteISR, a pioneering framework for reconstructing real-world stereo images. DiffSteISR utilizes the powerful prior knowledge embedded in pre-trained text-to-image model to efficiently recover the lost texture details in low-resolution stereo images. Specifically, DiffSteISR implements a time-aware stereo cross attention with temperature adapter (TASCATA) to guide the diffusion process, ensuring that the generated left and right views exhibit high texture consistency thereby reducing disparity error between the super-resolved images and the ground truth (GT) images. Additionally, a stereo omni attention control network (SOA ControlNet) is proposed to enhance the consistency of super-resolved images with GT images in the pixel, perceptual, and distribution space. Finally, DiffSteISR incorporates a stereo semantic extractor (SSE) to capture unique viewpoint soft semantic information and shared hard tag semantic information, thereby effectively improving the semantic accuracy and consistency of the generated left and right images. Extensive experimental results demonstrate that DiffSteISR accurately reconstructs natural and precise textures from low-resolution stereo images while maintaining a high consistency of semantic and texture between the left and right views.

cs.CV↗

arXiv2024

Fine-Tuning Medical Language Models for Enhanced Long-Contextual Understanding and Domain Expertise

Large Language Models (LLMs) have been widely applied in various professional fields. By fine-tuning the models using domain specific question and answer datasets, the professional domain knowledge and Q\&A abilities of these models have significantly improved, for example, medical professional LLMs that use fine-tuning of doctor-patient Q\&A data exhibit extraordinary disease diagnostic abilities. However, we observed that despite improvements in specific domain knowledge, the performance of medical LLM in long-context understanding has significantly declined, especially compared to general language models with similar parameters. The purpose of this study is to investigate the phenomenon of reduced performance in understanding long-context in medical LLM. We designed a series of experiments to conduct open-book professional knowledge exams on all models to evaluate their ability to read long-context. By adjusting the proportion and quantity of general data and medical data in the process of fine-tuning, we can determine the best data composition to optimize the professional model and achieve a balance between long-context performance and specific domain knowledge.

cs.CL↗

arXiv2024

Non-Adversarial Learning: Vector-Quantized Common Latent Space for Multi-Sequence MRI

Adversarial learning helps generative models translate MRI from source to target sequence when lacking paired samples. However, implementing MRI synthesis with adversarial learning in clinical settings is challenging due to training instability and mode collapse. To address this issue, we leverage intermediate sequences to estimate the common latent space among multi-sequence MRI, enabling the reconstruction of distinct sequences from the common latent space. We propose a generative model that compresses discrete representations of each sequence to estimate the Gaussian distribution of vector-quantized common (VQC) latent space between multiple sequences. Moreover, we improve the latent space consistency with contrastive learning and increase model stability by domain augmentation. Experiments using BraTS2021 dataset show that our non-adversarial model outperforms other GAN-based methods, and VQC latent space aids our model to achieve (1) anti-interference ability, which can eliminate the effects of noise, bias fields, and artifacts, and (2) solid semantic representation ability, with the potential of one-shot segmentation. Our code is publicly available.

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arXiv2024

Mobile-Bench: An Evaluation Benchmark for LLM-based Mobile Agents

With the remarkable advancements of large language models (LLMs), LLM-based agents have become a research hotspot in human-computer interaction. However, there is a scarcity of benchmarks available for LLM-based mobile agents. Benchmarking these agents generally faces three main challenges: (1) The inefficiency of UI-only operations imposes limitations to task evaluation. (2) Specific instructions within a singular application lack adequacy for assessing the multi-dimensional reasoning and decision-making capacities of LLM mobile agents. (3) Current evaluation metrics are insufficient to accurately assess the process of sequential actions. To this end, we propose Mobile-Bench, a novel benchmark for evaluating the capabilities of LLM-based mobile agents. First, we expand conventional UI operations by incorporating 103 collected APIs to accelerate the efficiency of task completion. Subsequently, we collect evaluation data by combining real user queries with augmentation from LLMs. To better evaluate different levels of planning capabilities for mobile agents, our data is categorized into three distinct groups: SAST, SAMT, and MAMT, reflecting varying levels of task complexity. Mobile-Bench comprises 832 data entries, with more than 200 tasks specifically designed to evaluate multi-APP collaboration scenarios. Furthermore, we introduce a more accurate evaluation metric, named CheckPoint, to assess whether LLM-based mobile agents reach essential points during their planning and reasoning steps.

cs.AI↗

arXiv2024

Charting the Path Forward: CT Image Quality Assessment -- An In-Depth Review

Computed Tomography (CT) is a frequently utilized imaging technology that is employed in the clinical diagnosis of many disorders. However, clinical diagnosis, data storage, and management are posed huge challenges by a huge volume of non-homogeneous CT data in terms of imaging quality. As a result, the quality assessment of CT images is a crucial problem that demands consideration. The history, advancements in research, and current developments in CT image quality assessment (IQA) are examined in this paper. In this review, we collected and researched more than 500 CT-IQA publications published before August 2023. And we provide the visualization analysis of keywords and co-citations in the knowledge graph of these papers. Prospects and obstacles for the continued development of CT-IQA are also covered. At present, significant research branches in the CT-IQA domain include Phantom study, Artificial intelligence deep-learning reconstruction algorithm, Dose reduction opportunity, and Virtual monoenergetic reconstruction. Artificial intelligence (AI)-based CT-IQA also becomes a trend. It increases the accuracy of the CT scanning apparatus, amplifies the impact of the CT system reconstruction algorithm, and creates an effective algorithm for post-processing CT images. AI-based medical IQA offers excellent application opportunities in clinical work. AI can provide uniform quality assessment criteria and more comprehensive guidance amongst various healthcare facilities, and encourage them to identify one another's images. It will help lower the number of unnecessary tests and associated costs, and enhance the quality of medical imaging and assessment efficiency.

eess.IV↗

arXiv2024

3MOS: Multi-sources, Multi-resolutions, and Multi-scenes dataset for Optical-SAR image matching

Optical-SAR image matching is a fundamental task for image fusion and visual navigation. However, all large-scale open SAR dataset for methods development are collected from single platform, resulting in limited satellite types and spatial resolutions. Since images captured by different sensors vary significantly in both geometric and radiometric appearance, existing methods may fail to match corresponding regions containing the same content. Besides, most of existing datasets have not been categorized based on the characteristics of different scenes. To encourage the design of more general multi-modal image matching methods, we introduce a large-scale Multi-sources,Multi-resolutions, and Multi-scenes dataset for Optical-SAR image matching(3MOS). It consists of 155K optical-SAR image pairs, including SAR data from six commercial satellites, with resolutions ranging from 1.25m to 12.5m. The data has been classified into eight scenes including urban, rural, plains, hills, mountains, water, desert, and frozen earth. Extensively experiments show that none of state-of-the-art methods achieve consistently superior performance across different sources, resolutions and scenes. In addition, the distribution of data has a substantial impact on the matching capability of deep learning models, this proposes the domain adaptation challenge in optical-SAR image matching. Our data and code will be available at:https://github.com/3M-OS/3MOS.

cs.CV↗

arXiv2024

LLM-Detector: Improving AI-Generated Chinese Text Detection with Open-Source LLM Instruction Tuning

ChatGPT and other general large language models (LLMs) have achieved remarkable success, but they have also raised concerns about the misuse of AI-generated texts. Existing AI-generated text detection models, such as based on BERT and RoBERTa, are prone to in-domain over-fitting, leading to poor out-of-domain (OOD) detection performance. In this paper, we first collected Chinese text responses generated by human experts and 9 types of LLMs, for which to multiple domains questions, and further created a dataset that mixed human-written sentences and sentences polished by LLMs. We then proposed LLM-Detector, a novel method for both document-level and sentence-level text detection through Instruction Tuning of LLMs. Our method leverages the wealth of knowledge LLMs acquire during pre-training, enabling them to detect the text they generate. Instruction tuning aligns the model's responses with the user's expected text detection tasks. Experimental results show that previous methods struggle with sentence-level AI-generated text detection and OOD detection. In contrast, our proposed method not only significantly outperforms baseline methods in both sentence-level and document-level text detection but also demonstrates strong generalization capabilities. Furthermore, since LLM-Detector is trained based on open-source LLMs, it is easy to customize for deployment.

cs.CL↗

arXiv2024

2.75D: Boosting learning by representing 3D Medical imaging to 2D features for small data

In medical-data driven learning, 3D convolutional neural networks (CNNs) have started to show superior performance to 2D CNNs in numerous deep learning tasks, proving the added value of 3D spatial information in feature representation. However, the difficulty in collecting more training samples to converge, more computational resources and longer execution time make this approach less applied. Also, applying transfer learning on 3D CNN is challenging due to a lack of publicly available pre-trained 3D models. To tackle these issues, we proposed a novel 2D strategical representation of volumetric data, namely 2.75D. In this work, the spatial information of 3D images is captured in a single 2D view by a spiral-spinning technique. As a result, 2D CNN networks can also be used to learn volumetric information. Besides, we can fully leverage pre-trained 2D CNNs for downstream vision problems. We also explore a multi-view 2.75D strategy, 2.75D 3 channels (2.75Dx3), to boost the advantage of 2.75D. We evaluated the proposed methods on three public datasets with different modalities or organs (Lung CT, Breast MRI, and Prostate MRI), against their 2D, 2.5D, and 3D counterparts in classification tasks. Results show that the proposed methods significantly outperform other counterparts when all methods were trained from scratch on the lung dataset. Such performance gain is more pronounced with transfer learning or in the case of limited training data. Our methods also achieved comparable performance on other datasets. In addition, our methods achieved a substantial reduction in time consumption of training and inference compared with the 2.5D or 3D method.

eess.IV↗

arXiv2024

Dual-Decoder Consistency via Pseudo-Labels Guided Data Augmentation for Semi-Supervised Medical Image Segmentation

While supervised learning has achieved remarkable success, obtaining large-scale labeled datasets in biomedical imaging is often impractical due to high costs and the time-consuming annotations required from radiologists. Semi-supervised learning emerges as an effective strategy to overcome this limitation by leveraging useful information from unlabeled datasets. In this paper, we present a novel semi-supervised learning method, Dual-Decoder Consistency via Pseudo-Labels Guided Data Augmentation (DCPA), for medical image segmentation. We devise a consistency regularization to promote consistent representations during the training process. Specifically, we use distinct decoders for student and teacher networks while maintain the same encoder. Moreover, to learn from unlabeled data, we create pseudo-labels generated by the teacher networks and augment the training data with the pseudo-labels. Both techniques contribute to enhancing the performance of the proposed method. The method is evaluated on three representative medical image segmentation datasets. Comprehensive comparisons with state-of-the-art semi-supervised medical image segmentation methods were conducted under typical scenarios, utilizing 10% and 20% labeled data, as well as in the extreme scenario of only 5% labeled data. The experimental results consistently demonstrate the superior performance of our method compared to other methods across the three semi-supervised settings. The source code is publicly available at https://github.com/BinYCn/DCPA.git.

eess.IV↗

arXiv2024

To deform or not: treatment-aware longitudinal registration for breast DCE-MRI during neoadjuvant chemotherapy via unsupervised keypoints detection

Clinicians compare breast DCE-MRI after neoadjuvant chemotherapy (NAC) with pre-treatment scans to evaluate the response to NAC. Clinical evidence supports that accurate longitudinal deformable registration without deforming treated tumor regions is key to quantifying tumor changes. We propose a conditional pyramid registration network based on unsupervised keypoint detection and selective volume-preserving to quantify changes over time. In this approach, we extract the structural and the abnormal keypoints from DCE-MRI, apply the structural keypoints for the registration algorithm to restrict large deformation, and employ volume-preserving loss based on abnormal keypoints to keep the volume of the tumor unchanged after registration. We use a clinical dataset with 1630 MRI scans from 314 patients treated with NAC. The results demonstrate that our method registers with better performance and better volume preservation of the tumors. Furthermore, a local-global-combining biomarker based on the proposed method achieves high accuracy in pathological complete response (pCR) prediction, indicating that predictive information exists outside tumor regions. The biomarkers could potentially be used to avoid unnecessary surgeries for certain patients. It may be valuable for clinicians and/or computer systems to conduct follow-up tumor segmentation and response prediction on images registered by our method. Our code is available on \url{https://github.com/fiy2W/Treatment-aware-Longitudinal-Registration}.

eess.IV↗

arXiv2024

Aurora:Activating Chinese chat capability for Mixtral-8x7B sparse Mixture-of-Experts through Instruction-Tuning

Existing research has demonstrated that refining large language models (LLMs) through the utilization of machine-generated instruction-following data empowers these models to exhibit impressive zero-shot capabilities for novel tasks, without requiring human-authored instructions. In this paper, we systematically investigate, preprocess, and integrate three Chinese instruction-following datasets with the aim of enhancing the Chinese conversational capabilities of Mixtral-8x7B sparse Mixture-of-Experts model. Through instruction fine-tuning on this carefully processed dataset, we successfully construct the Mixtral-8x7B sparse Mixture-of-Experts model named "Aurora." To assess the performance of Aurora, we utilize three widely recognized benchmark tests: C-Eval, MMLU, and CMMLU. Empirical studies validate the effectiveness of instruction fine-tuning applied to Mixtral-8x7B sparse Mixture-of-Experts model. This work is pioneering in the execution of instruction fine-tuning on a sparse expert-mixed model, marking a significant breakthrough in enhancing the capabilities of this model architecture. Our code, data and model are publicly available at https://github.com/WangRongsheng/Aurora

cs.CL↗

arXiv2023

Distance Guided Generative Adversarial Network for Explainable Binary Classifications

Despite the potential benefits of data augmentation for mitigating the data insufficiency, traditional augmentation methods primarily rely on the prior intra-domain knowledge. On the other hand, advanced generative adversarial networks (GANs) generate inter-domain samples with limited variety. These previous methods make limited contributions to describing the decision boundaries for binary classification. In this paper, we propose a distance guided GAN (DisGAN) which controls the variation degrees of generated samples in the hyperplane space. Specifically, we instantiate the idea of DisGAN by combining two ways. The first way is vertical distance GAN (VerDisGAN) where the inter-domain generation is conditioned on the vertical distances. The second way is horizontal distance GAN (HorDisGAN) where the intra-domain generation is conditioned on the horizontal distances. Furthermore, VerDisGAN can produce the class-specific regions by mapping the source images to the hyperplane. Experimental results show that DisGAN consistently outperforms the GAN-based augmentation methods with explainable binary classification. The proposed method can apply to different classification architectures and has potential to extend to multi-class classification.

cs.CV↗