arXiv subjects

Tatiana Latychevskaia

Publications and source records attributed to Tatiana Latychevskaia.

66 records · Page 4Linked to original sources

arXiv2013

On artefact-free reconstruction of low-energy (30-250 eV) electron holograms

Low-energy electrons (30-250 eV) have been successfully employed for imaging individual biomolecules. The most simple and elegant design of a low-energy electron microscope for imaging biomolecules is a lensless setup that operates in the holographic mode. In this work we address the problem associated with the reconstruction from the recorded holograms. We discuss the twin image problem intrinsic to inline holography and the problem of the so-called biprism-like effect specific to low-energy electrons. We demonstrate how the presence of the biprism-like effect can be efficiently identified and circumvented. The presented sideband filtering reconstruction method eliminates the twin image and allows for reconstruction despite the biprism-like effect, which we demonstrate on both, simulated and experimental examples.

physics.ins-det↗

arXiv2013

Pulsed Electron Holography

A technique of pulsed low-energy electron holography is introduced that allows for recording highly resolved holograms within reduced exposure times. Therefore, stacks of holograms are accumulated in a pulsed mode with individual acquisition times as short as 50 μs. Subsequently, these holograms are aligned and finally superimposed. The resulting holographic record reveals previously latent high-order interference fringes and thereby pushing interference resolution into the sub-nanometer regime. In view of the non-damaging character of low-energy electrons, the method is of particular interest for structural analysis of fragile biomolecules.

physics.ins-det↗

arXiv2013

Coherent diffraction and holographic imaging of individual biomolecules using low-energy electrons

Modern microscopy techniques are aimed at imaging an individual molecule at atomic resolution. Here we show that low-energy electrons with kinetic energies of 50-250 eV offer a possibility of overcome the problem of radiation damage, and obtaining images of individual biomolecules. Two experimental schemes for obtaining images of individual molecules, holography and coherent diffraction imaging, are discussed and compared. Images of individual molecules obtained by both techniques, using low-energy electrons, are shown.

physics.bio-ph↗

arXiv2013

Graphene Unit Cell Imaging by Holographic Coherent Diffraction

We have imaged a freestanding graphene sheet of 210 nm in diameter with 2 Angstrom resolution by combining coherent diffraction and holography with low-energy electrons. The entire sheet is reconstructed from just a single diffraction pattern displaying the arrangement of 660.000 individual graphene unit cells at once. Given the fact that electrons with kinetic energies of the order of 100 eV do not damage biological molecules, it will now be a matter to develop methods for depositing individual proteins onto such graphene sheets.

cond-mat.mtrl-sci↗

arXiv2013

Advanced holographic nondestructive testing system for residual stress analysis

The design and operating of a portable holographic interferometer for residual stress analysis by creating a small scratch along with a new mathematical algorithm of calculations are discussed. Preliminary data of the stress investigations on aluminum and steel alloys have been obtained by the automatic processing of the interference pattern using a notebook computer. A phase-shift compensation technique in real-time reflection interferometry is used to measure the out-of-plane stress release surface displacement surrounding a small scratch (25 um depth and 0.5 mm width) in a plate with residual stress of around 50 MPa. Comparison between theoretical models for a rectangular and triangular shaped scratch with the experimental data are presented.

physics.optics↗

arXiv2012

When holography meets coherent diffraction imaging

Modern imaging techniques at the molecular scale rely on utilizing novel coherent light sources like X-ray free electron lasers for the ultimate goal of visualizing such objects as individual biomolecules rather than crystals. Here, unlike in the case of crystals where structures can be solved by model building and phase refinement, the phase distribution of the wave scattered by an individual molecule must directly be recovered. There are two well-known solutions to the phase problem: holography and coherent diffraction imaging (CDI). Both techniques have their pros and cons. In holography, the reconstruction of the scattered complex-valued object wave is directly provided by a well-defined reference wave that must cover the entire detector area which often is an experimental challenge. CDI provides the highest possible, only wavelength limited, resolution, but the phase recovery is an iterative process which requires some pre-defined information about the object and whose outcome is not always uniquely-defined. Moreover, the diffraction patterns must be recorded under oversampling conditions, a pre-requisite to be able to solve the phase problem. Here, we report how holography and CDI can be merged into one superior technique: holographic coherent diffraction imaging (HCDI). An inline hologram can be recorded by employing a modified CDI experimental scheme. We demonstrate that the amplitude of the Fourier transform of an inline hologram is related to the complex-valued visibility, thus providing information on both, the amplitude and the phase of the scattered wave in the plane of the diffraction pattern. With the phase information available, the condition of oversampling the diffraction patterns can be relaxed, and the phase problem can be solved in a fast and unambiguous manner.

physics.optics↗

arXiv2012

Low-energy electron transmission imaging of clusters on free-standing graphene

We investigated the utility of free-standing graphene as a transparent sample carrier for imaging nanometer-sized objects by means of low-energy electron holography. The sample preparation for obtaining contamination-free graphene as well as the experimental setup and findings are discussed. For incoming electrons with 66 eV kinetic energy graphene exhibits 27% opacity per layer. Hence, electron holograms of nanometer-sized objects adsorbed on free-standing graphene can be recorded and numerically reconstructed to reveal the object's shapes and distribution. Furthermore, a Moire effect has been observed with free-standing graphene multi-layers.

cond-mat.mes-hall↗

arXiv2012

Non-destructive imaging of an individual protein

The mode of action of proteins is to a large extent given by their ability to adopt different conformations. This is why imaging single biomolecules at atomic resolution is one of the ultimate goals of biophysics and structural biology. The existing protein database has emerged from X-ray crystallography, NMR or cryo-TEM investigations. However, these tools all require averaging over a large number of proteins and thus over different conformations. This of course results in the loss of structural information. Likewise it has been shown that even the emergent X-FEL technique will not get away without averaging over a large quantity of molecules. Here we report the first recordings of a protein at sub-nanometer resolution obtained from one individual ferritin by means of low-energy electron holography. One single protein could be imaged for an extended period of time without any sign of radiation damage. Since ferritin exhibits an iron core, the holographic reconstructions could also be cross-validated against TEM images of the very same molecule by imaging the iron cluster inside the molecule while the protein shell is decomposed.

physics.bio-ph↗

arXiv2011

Novel Fourier-domain constraint for fast phase retrieval in coherent diffraction imaging

Coherent diffraction imaging (CDI) for visualizing objects at atomic resolution has been realized as a promising tool for imaging single molecules. Drawbacks of CDI are associated with the difficulty of the numerical phase retrieval from experimental diffraction patterns; a fact which stimulated search for better numerical methods and alternative experimental techniques. Common phase retrieval methods are based on iterative procedures which propagate the complex-valued wave between object and detector plane. Constraints in both, the object and the detector plane are applied. While the constraint in the detector plane employed in most phase retrieval methods requires the amplitude of the complex wave to be equal to the squared root of the measured intensity, we propose a novel Fourier-domain constraint, based on an analogy to holography. Our method allows achieving a low-resolution reconstruction already in the first step followed by a high-resolution reconstruction after further steps. In comparison to conventional schemes this Fourier-domain constraint results in a fast and reliable convergence of the iterative reconstruction process.

physics.optics↗

arXiv2009

Non-destructive Imaging of Individual Bio-Molecules

Radiation damage is considered to be the major problem that still prevents imaging an individual biological molecule for structural analysis. So far, all known mapping techniques using sufficient short wave-length radiation, be it X-rays or high energy electrons, circumvent this problem by averaging over many molecules. Averaging, however, leaves conformational details uncovered. Even the anticipated use of ultra-short but extremely bright X-ray bursts of a Free Electron Laser shall afford averaging over 10^6 molecules to arrive at atomic resolution. Here we present direct experimental evidence for non-destructive imaging of individual DNA molecules. In fact, we show that DNA withstands coherent low energy electron radiation with deBroglie wavelength in the Angstrom regime despite a vast dose of 10^8 electrons/nm^2 accumulated over more than one hour.

physics.bio-ph↗

arXiv2009

Simultaneous reconstruction of phase and amplitude contrast from a single holographic record

We present a reconstruction technique for simultaneous retrieval of absorption and phase shifting properties of an object recorded by in-line holography. The routine is experimentally tested by applying it to optical holograms of a pure phase respectively amplitude object of micrometer dimensions that has been machined into a glass-plate using a focused ion beam. The method has also been applied to previously published electron holograms of single DNA molecules.

physics.optics↗

arXiv2006

Solution to the twin image problem in holography

While the invention of holography by Dennis Gabor truly constitutes an ingenious concept, it has ever since been troubled by the so called twin image problem limiting the information that can be obtained from a holographic record. Due to symmetry reasons there are always two images appearing in the reconstruction process. Thus, the reconstructed object is obscured by its unwanted out of focus twin image. Especially for emission electron as well as for x- and gamma-ray holography, where the source-object distances are small, the reconstructed images of atoms are very close to their twin images from which they can hardly be distinguished. In some particular instances only, experimental efforts could remove the twin images. More recently, numerical methods to diminish the effect of the twin image have been proposed but are limited to purely absorbing objects failing to account for phase shifts caused by the object. Here we show a universal method to reconstruct a hologram completely free of twin images disturbance while no assumptions about the object need to be imposed. Both, amplitude and true phase distributions are retrieved without distortion.

physics.data-an↗