arXiv subjects

Tazro Ohta

Publications and source records attributed to Tazro Ohta.

2 recordsLinked to original sources

arXiv2026

AI-assisted pre-review of open-source software submissions: an experience report from BOSC 2026

Most conferences rely on peer-review of submissions, but as generative AI makes it easier than ever to prepare submission materials, some conferences are seeing an overwhelming surge of submissions. We wanted to see if generative AI could help our conference's volunteer reviewers by pre-reviewing abstracts for certain criteria. The Bioinformatics Open Source Conference (BOSC) was well-positioned to experiment with this, as we already had a detailed rubric used by reviewers to evaluate submitted abstracts on multiple criteria, including openness (public availability of the code or other content associated with the project), valid open source license, and "runnability" (how easy it is to download, build, and run the project - an important measure of reusability). For BOSC 2026, we built bosc-pre-review, an agentic skill that assessed six review criteria, and Runabilly, which builds and tests each project in a disposable Docker container for safety. The AI only gathered evidence to present to the reviewers; humans made every decision regarding the acceptance of the abstracts. After the review period, we surveyed the reviewers to determine how useful they found the pre-review. Most of those who responded said they found it useful, but they preferred to check the AI's conclusions against their own, rather than accepting the AI results unquestioningly.

cs.CL↗

arXiv2023

Recording provenance of workflow runs with RO-Crate

Recording the provenance of scientific computation results is key to the support of traceability, reproducibility and quality assessment of data products. Several data models have been explored to address this need, providing representations of workflow plans and their executions as well as means of packaging the resulting information for archiving and sharing. However, existing approaches tend to lack interoperable adoption across workflow management systems. In this work we present Workflow Run RO-Crate, an extension of RO-Crate (Research Object Crate) and Schema.org to capture the provenance of the execution of computational workflows at different levels of granularity and bundle together all their associated objects (inputs, outputs, code, etc.). The model is supported by a diverse, open community that runs regular meetings, discussing development, maintenance and adoption aspects. Workflow Run RO-Crate is already implemented by several workflow management systems, allowing interoperable comparisons between workflow runs from heterogeneous systems. We describe the model, its alignment to standards such as W3C PROV, and its implementation in six workflow systems. Finally, we illustrate the application of Workflow Run RO-Crate in two use cases of machine learning in the digital image analysis domain. A corresponding RO-Crate for this article is at https://w3id.org/ro/doi/10.5281/zenodo.10368989

cs.DL↗