arXiv subjects

Teena tom Dieck

Publications and source records attributed to Teena tom Dieck.

5 recordsLinked to original sources

arXiv2025

Modulation Schemes for Functionalized Vesicle-based MC Transmitters

Molecular communication (MC) enables information exchange through the transmission of signaling molecules (SMs) and holds promise for many innovative applications. However, most existing works in MC rely on simplified transmitter (TX) models that do not account for the physical and biochemical limitations of realistic biological hardware and environments. This work extends previous efforts toward developing models for practical MC systems by proposing a more realistic TX model that incorporates the delay in SM release and TX noise introduced by biological components. Building on this more realistic, functionalized vesicle-based TX model, we propose two novel modulation schemes specifically designed for this TX to mitigate TX-induced memory effects that arise from delayed and imperfectly controllable SM release. The proposed modulation schemes enable low-complexity receiver designs by mitigating memory effects directly at the TX. Numerical evaluations demonstrate that the proposed schemes improve communication reliability under realistic biochemical constraints, offering an important step toward physically realizable MC systems.

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arXiv2025

Closed-Loop Long-Term Experimental Molecular Communication System

We present a fluid-based experimental molecular communication (MC) testbed which uses media modulation. Motivated by the natural human cardiovascular system, the testbed operates in a closed-loop tube system. The proposed system is designed to be biocompatible, resource-efficient, and controllable from outside the tube. As signaling molecule, the testbed employs the green fluorescent protein variant "Dreiklang" (GFPD). GFPDs can be reversibly switched via light of different wavelengths between a bright fluorescent state and a less fluorescent state. GFPDs in solution are filled into the testbed prior to the start of information transmission and remain there for an entire experiment. For information transmission, an optical transmitter (TX) and an optical eraser (EX), which are located outside the tube, are used to write and erase the information encoded in the state of the GFPDs, respectively. At the receiver (RX), the state of the GFPDs is read out by fluorescence detection. In our testbed, due to the closed-loop setup, we observe new forms of inter-symbol interferences (ISI), which do not occur in short experiments and open-loop systems. For the testbed, we developed a communication scheme, which includes blind transmission start detection, symbol-by-symbol synchronization, and adaptive threshold detection. We comprehensively analyze our MC experiments using different performance metrics. Moreover, we experimentally demonstrate the error-free transmission of 5370 bit at a data rate of 36 $\textrm{bit}\, \textrm{min}^{\boldsymbol{-1}}$ using 8-ary modulation and the error-free binary transmission of around 90000 bit at a data rate of 12 $\textrm{bit}\, \textrm{min}^{\boldsymbol{-1}}$. For the latter experiment, data was transmitted for a period of 125 hours. All signals recorded and parts of the evaluation code are publicly available on Zenodo and Github, respectively.

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arXiv2025

Practical Transmitters for Molecular Communication: Functionalized Nanodevices Employing Cooperative Transmembrane Transport Proteins

This paper introduces a novel optically controllable molecular communication (MC) transmitter (TX) design based on vesicular nanodevices (NDs). The NDs are functionalized for the controlled release of signaling molecules (SMs) via transmembrane proteins. The proposed design contributes to overcoming the current barrier between MC theory and practical implementation, as all components of the system are chemically realizable. The NDs possess an optical-to-chemical conversion capability, therefore, the proposed NDs can be employed as externally controllable TXs in various MC systems. The proposed ND design comprises two cooperating modules, namely an energizing module and a release module, and, depending on the specific choices for the modules, allows for the release of different types of SMs. After introducing the general system model for the proposed realistic TX design, we provide a detailed mathematical analysis of a specific TX realization. In particular, we derive both an exact and a closed-form approximate analytical solution for the concentration of the released SMs and validate our results by comparison with a numerical solution. Moreover, we model the impact of a buffering medium, which is typically present in liquid environments, e.g., in experimental settings or in in-body applications. This allows the evaluation of the feasibility of our proposed TX design in practical chemical implementations. We consider various forms of parameter randomness occurring during vesicle synthesis, i.e., deviations which are unavoidable during experiments. We show that considering random distributions of the parameter values, such as the ND size, the number of incorporated proteins on the vesicle surface, and the vesicle membrane permeability, is crucial for an adequate kinetic analysis of the system.

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arXiv2023

Closed Loop Molecular Communication Testbed: Setup, Interference Analysis, and Experimental Results

In this paper, we present a fluid-based experimental molecular communication (MC) testbed that, similar to the human cardiovascular system, operates in a closed circuit tube system. The proposed system is designed to be biocompatible, resource-efficient, and controllable from outside the tube. As signaling molecule, the testbed employs the green fluorescent protein variant "Dreiklang" (GFPD). GFPDs can be reversibly switched via light of different wavelengths between a bright fluorescent state and a less fluorescent state. Hence, this property allows for writing and erasing information encoded in the state of the GFPDs already present in the fluid via radiation from outside the tube. The concept of modulating the GFPDs existing in the channel at the transmitter for information transmission, instead of releasing new molecules, is a form of media modulation. In our testbed, due to the closed loop setup and the long experiment durations of up to 250 min, we observe new forms of inter-symbol interferences (ISI), which do not occur in short experiments and open loop systems. In particular, up to four different forms of ISI, namely channel ISI, inter-loop ISI, offset ISI, and permanent ISI, occur in the considered system. To mitigate inter-loop ISI and offset ISI, we propose a light based eraser unit. We experimentally demonstrate reliable information transmission in our testbed achieving error-free transmission of 500 bit at a data rate of 6 bit/min based on a sub-optimal low-complexity detection scheme.

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arXiv2023

Switchable Signaling Molecules for Media Modulation: Fundamentals, Applications, and Research Directions

Although visionary applications of molecular communication (MC), such as long-term continuous health monitoring by cooperative in-body nanomachines, have been proposed, MC is still in its infancy when it comes to practical implementation. In particular, long-term experiments and applications face issues such as depletion of signaling molecules (SMs) at the transmitter (TX) and inter-symbol interference (ISI) at the receiver (RX). To overcome these practical challenges, a new class of SMs with switchable states seems to be promising for future MC applications. In this work, we provide an overview of existing switchable SMs, and classify them according to their properties. Furthermore, we highlight how switchable SMs can be utilized as information carriers for media modulation. In addition, we present theoretical and experimental results for an end-to-end MC system employing the green fluorescent protein variant "Dreiklang" (GFPD) as switchable SM. Our experimental results show, for the first time, successful information transmission in a closed-loop pipe system using media modulation. Finally, we discuss media modulation specific challenges and opportunities.

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