Searcharxiv⌕ Search

arXiv subjects

Théotim Lucas

Publications and source records attributed to Théotim Lucas.

5 recordsLinked to original sources

Physically Consistent Image Augmentation for Deep Learning in Mueller Matrix Polarimetry

Mueller matrix polarimetry captures essential information about polarized light interactions with a sample, presenting unique challenges for data augmentation in deep learning due to its distinct structure. While augmentations are an effective and affordable way to enhance dataset diversity and reduce overfitting, standard transformations like rotations and flips do not preserve the polarization properties in Mueller matrix images. To this end, we introduce a versatile simulation framework that applies physically consistent rotations and flips to Mueller matrices, tailored to maintain polarization fidelity. Our experimental results across multiple datasets reveal that conventional augmentations can lead to falsified results when applied to polarimetric data, underscoring the necessity of our physics-based approach. In our experiments, we first compare our polarization-specific augmentations against real-world captures to validate their physical consistency. We then apply these augmentations in a semantic segmentation task, achieving substantial improvements in model generalization and performance. This study underscores the necessity of physics-informed data augmentation for polarimetric imaging in deep learning (DL), paving the way for broader adoption and more robust applications across diverse research in the field. In particular, our framework unlocks the potential of DL models for polarimetric datasets with limited sample sizes. Our code implementation is available at github.com/hahnec/polar_augment.

cs.CV↗

Machine Learning Model for Complete Reconstruction of Diagnostic Polarimetric Images from partial Mueller polarimetry data

The translation of imaging Mueller polarimetry to clinical practice is often hindered by large footprint and relatively slow acquisition speed of the existing instruments. Using polarization-sensitive camera as a detector may reduce instrument dimensions and allow data streaming at video rate. However, only the first three rows of a complete 4x4 Mueller matrix can be measured. To overcome this hurdle we developed a machine learning approach using sequential neural network algorithm for the reconstruction of missing elements of a Mueller matrix from the measured elements of the first three rows. The algorithm was trained and tested on the dataset of polarimetric images of various excised human tissues (uterine cervix, colon, skin, brain) acquired with two different imaging Mueller polarimeters operating in either reflection (wide-field imaging system) or transmission (microscope) configurations at different wavelengths of 550 nm and 385 nm, respectively. The reconstruction performance was evaluated using various error metrics, all of which confirmed low error values. The execution time of the trained neural network algorithm was about 300 microseconds for a single image pixel. It suggests that a machine learning approach with parallel processing of all image pixels combined with the partial Mueller polarimeter operating at video rate can effectively substitute for the complete Mueller polarimeter and produce accurate maps of depolarization, linear retardance and orientation of the optical axis of biological tissues, which can be used for medical diagnosis in clinical settings.

physics.optics↗

Volumetric and Simultaneous Photoacoustic and Ultrasound Imaging with a Conventional Linear Array in a Multiview Scanning Scheme

Volumetric, multimodal imaging with precise spatial and temporal co-registration can provide valuable and complementary information for diagnosis and monitoring. Considerable research has sought to combine 3D photoacoustic (PA) and ultrasound (US) imaging in clinically translatable configurations. However, technical compromises currently result in poor image quality either for photoacoustic or ultrasonic modes. This work aims to provide translatable, high quality, simultaneously co-registered dual-mode PA/US 3D tomography. Volumetric imaging based on a synthetic aperture approach was implemented by interlacing PA and US acquisitions during a rotate-translate scan with a 5-MHz linear array (12 angles and 30-mm translation to image a 21-mm diameter, 19 mm long cylindrical volume within 21 seconds). For co-registration, an original calibration method using a specifically designed thread phantom was developed to estimate 6 geometrical parameters and 1 temporal off-set through global optimization of the reconstructed sharpness and superposition of calibration phantom structures. Phantom design and cost function metrics were selected based on analysis of a numerical phantom, and resulted in a high estimation accuracy for the 7 parameters. Experimental estimations validated the calibration repeatability. The estimated parameters were used for bimodal reconstruction of additional phantoms with either identical or distinct spatial distributions of US and PA contrasts. Superposition distance of the two modes was within < 10% of the acoustic wavelength and a wavelength-order uniform spatial resolution was obtained. This dual-mode PA/US tomography should contribute to more sensitive and robust detection and follow-up of biological changes or the monitoring slower-kinetic phenomena in living systems such as the accumulation of nanoagents.

physics.optics↗

Calibrated photoacoustic spectrometer based on a conventional imaging system for in vitro characterization of contrast agents

Photoacoustic (PA) imaging systems are spreading in the biomedical community, and the de-velopment of new PA contrast agents is an active area of research. However, PA contrast agents are usually characterized with spectrophotometry or uncalibrated PA imaging systems, leading to partial assessment of their PA efficiency. To enable quantitative PA spectroscopy of contrast agents in vitro with conventional PA imaging systems, we have developed an adapted calibration method. Contrast agents in solution are injected in a dedicated non-scattering tube phantom imaged at different optical wavelengths. The calibration method uses a reference solu-tion of cupric sulfate to simultaneously correct for the spectral energy distribution of excitation light at the tube location and perform a conversion of the tube amplitude in the image from ar-bitrary to spectroscopic units. The method does not require any precise alignment and provides quantitative PA spectra, even with non-uniform illumination and ultrasound sensitivity. It was implemented on a conventional imaging setup based on a tunable laser operating between 680 nm and 980 nm and a 5 MHz clinical ultrasound array. We demonstrated robust calibrated PA spectroscopy with sample volumes as low as 15 μL of known chromophores and commonly used contrast agents. The validated method will be an essential and accessible tool for the de-velopment of new and efficient PA contrast agents by improving their quantitative characterization.

physics.ins-det↗

High contrast and resolution 3-D ultrasonography with a clinical linear transducer array scanned in a rotate-translate geometry

We propose a novel solution for volumetric ultrasound imaging using single-side access 3-D synthetic-aperture scanning of a clinical linear array. This solution is based on an advanced scanning geometry and a software-based ultrasound platform. The rotate-translate scanning scheme increases the elevation angular aperture by pivoting the array [-45{\textdegree} to 45{\textdegree}] around its array axis (axis along the row of its elements) and then, scans the imaged object for each pivoted angle by translating the array perpendicularly to the rotation axis. A theoretical basis is presented so that the angular and translational scan sampling periods can be best adjusted for any linear transducer array. We experimentally implemented scanning with a 5-MHz array. In vitro characterization was performed with phantoms designed to test resolution and contrast. Spatial resolution assessed based on the full-width half-maximum of images from isolated microspheres was increased by a factor 3 along the translational direction from a simple translation scan of the array. Moreover, the resolution is uniform over a cross-sectional area of 4.5 cm 2. Angular sampling periods were optimized and tapered to decrease the scan duration while maintaining image contrast (contrast at the center of a 5 mm cyst on the order of-26 dB for 4{\textdegree} angular period and a scan duration of 10 s for a 9cm 3 volume). We demonstrate that superior 3-D US imaging can be obtained with a clinical array using our scanning strategy. This technique offers a promising and flexible alternative to development of costly matrix arrays toward the development of sensitive volumetric ultrasonography.

physics.med-ph↗