Searcharxiv⌕ Search

arXiv subjects

Thomas Franosch

Publications and source records attributed to Thomas Franosch.

At least 91 records · Page 5Linked to original sources

Resonances arising from hydrodynamic memory in Brownian motion - The colour of thermal noise

Observation of the Brownian motion of a small probe interacting with its environment is one of the main strategies to characterize soft matter. Essentially two counteracting forces govern the motion of the Brownian particle. First, the particle is driven by the rapid collisions with the surrounding solvent molecules, referred to as thermal noise. Second, the friction between the particle and the viscous solvent damps its motion. Conventionally, the thermal force is assumed to be random and characterized by a white noise spectrum. Friction is assumed to be given by the Stokes drag, implying that motion is overdamped. However, as the particle receives momentum from the fluctuating fluid molecules, it also displaces the fluid in its immediate vicinity. The entrained fluid acts back on the sphere and gives rise to long-range correlation. This hydrodynamic memory translates to thermal forces, which display a coloured noise spectrum. Even 100 years after Perrin's pioneering experiments on Brownian motion, direct experimental observation of this colour has remained elusive. Here, we measure the spectrum of thermal noise by confining the Brownian fluctuations of a microsphere by a strong optical trap. We show that due to hydrodynamic correlations the power spectral density of the spheres positional fluctuations exhibits a resonant peak in strong contrast to overdamped systems. Furthermore, we demonstrate that peak amplification can be achieved through parametric excitation. In analogy to Microcantilever-based sensors our results demonstrate that the particle-fluid-trap system can be considered as a nanomechanical resonator, where the intrinsic hydrodynamic backflow enhances resonance. Therefore, instead of being a disturbance, details in thermal noise can be exploited for the development of new types of sensors and particle-based assays for lab-on-a-chip applications.

cond-mat.soft↗

Predicting patterns for molecular self-organization on surfaces using interaction-site models

Molecular building blocks interacting at the nanoscale organize spontaneously into stable mono- layers that display intriguing long-range ordering motifs on the surface of atomic substrates. The patterning process, if appropriately controlled, represents a viable route to manufacture practical nanodevices. With this goal in mind, we seek to capture the salient features of the self-assembly process by means of an interaction-site model. The geometry of the building blocks, the symmetry of the underlying substrate, and the strength and range of interactions encode the self-assembly pro- cess. By means of Monte Carlo simulations, we have predicted an ample variety of ordering motifs which nicely reproduce the experimental results. Here, we explore in detail the phase behavior of the system in terms of the temperature and the lattice constant of the underlying substrate. Our method is suitable to investigate the stability of the emergent patterns as well as to identify the nature of the melting transition monitoring appropriate order parameters.

cond-mat.mes-hall↗

Driven Transport on Parallel Lanes with Particle Exclusion and Obstruction

We investigate a driven two-channel system where particles on different lanes mutually obstruct each others motion extending an earlier model by Popkov and Peschel [1]. This obstruction may occur in biological contexts due to steric hinderance where motor proteins carry cargos by `walking' on microtubules. Similarly, the model serves as a description for classical spin transport where charged particles with internal states move unidirectionally on a lattice. Three regimes of qualitatively different behavior are identified depending on the strength of coupling between the lanes. For small and large coupling strengths the model can be mapped to a one-channel problem, whereas a new and rich phase behavior emerges for intermediate ones. We derive an approximate but quantitatively accurate theoretical description in terms of a one-site cluster approximation, and obtain insight into the phase behavior through the current-density relations combined with an extremal-current principle. Our results are confirmed by stochastic simulations. [1] V. Popkov and I. Peschel, Phys. Rev. E 64, 026126 (2001).

physics.bio-ph↗

Anomalous transport of a tracer on percolating clusters

We investigate the dynamics of a single tracer exploring a course of fixed obstacles in the vicinity of the percolation transition for particles confined to the infinite cluster. The mean-square displacement displays anomalous transport, which extends to infinite times precisely at the critical obstacle density. The slowing down of the diffusion coefficient exhibits power-law behavior for densities close to the critical point and we show that the mean-square displacement fulfills a scaling hypothesis. Furthermore, we calculate the dynamic conductivity as response to an alternating electric field. Last, we discuss the non-gaussian parameter as an indicator for heterogeneous dynamics.

cond-mat.stat-mech↗

Anomalous transport resolved in space and time by fluorescence correlation spectroscopy

A ubiquitous observation in crowded cell membranes is that molecular transport does not follow Fickian diffusion but exhibits subdiffusion. The microscopic origin of such a behaviour is not understood and highly debated. Here we discuss the spatio-temporal dynamics for two models of subdiffusion: fractional Brownian motion and hindered motion due to immobile obstacles. We show that the different microscopic mechanisms can be distinguished using fluorescence correlation spectroscopy (FCS) by systematic variation of the confocal detection area. We provide a theoretical framework for space-resolved FCS by generalising FCS theory beyond the common assumption of spatially Gaussian transport. We derive a master formula for the FCS autocorrelation function, from which it is evident that the beam waist of an FCS experiment is a similarly important parameter as the wavenumber of scattering experiments. These results lead to scaling properties of the FCS correlation for both models, which are tested by in silico experiments. Further, our scaling prediction is compatible with the FCS half-value times reported by Wawrezinieck et al. [Biophys. J. 89, 4029 (2005)] for in vivo experiments on a transmembrane protein.

cond-mat.soft↗

Glass Transition in Confined Geometry

Extending mode-coupling theory, we elaborate a microscopic theory for the glass transition of liquids confined between two parallel flat hard walls. The theory contains the standard MCT equations in bulk and in two dimensions as limiting cases and requires as input solely the equilibrium density profile and the structure factors of the fluid in confinement. We evaluate the phase diagram as a function of the distance of the plates for the case of a hard sphere fluid and obtain an oscillatory behavior of the glass transtion line as a result of the structural changes related to layering.

cond-mat.soft↗

Localization phenomena in models of ion-conducting glass formers

The mass transport in soft-sphere mixtures of small and big particles as well as in the disordered Lorentz gas (LG) model is studied using molecular dynamics (MD) computer simulations. The soft-sphere mixture shows anomalous small-particle diffusion signifying a localization transition separate from the big-particle glass transition. Switching off small-particle excluded volume constraints slows down the small-particle dynamics, as indicated by incoherent intermediate scattering functions. A comparison of logarithmic time derivatives of the mean-squared displacements reveals qualitative similarities between the localization transition in the soft-sphere mixture and its counterpart in the LG. Nevertheless, qualitative differences emphasize the need for further research elucidating the connection between both models.

cond-mat.stat-mech↗

Space-resolved dynamics of a tracer in a disordered solid

The dynamics of a tracer particle in a glassy matrix of obstacles displays slow complex transport as the free volume approaches a critical value and the void space falls apart. We investigate the emerging subdiffusive motion of the test particle by extensive molecular dynamics simulations and characterize the spatio-temporal transport in terms of two-time correlation functions, including the time-dependent diffusion coefficient as well as the wavenumber-dependent intermediate scattering function. We rationalize our findings within the framework of critical phenomena and compare our data to a dynamic scaling theory.

cond-mat.stat-mech↗

Persistent correlation of constrained colloidal motion

We have investigated the motion of a single optically trapped colloidal particle close to a limiting wall at time scales where the inertia of the surrounding fluid plays a significant role. The velocity autocorrelation function exhibits a complex interplay due to the momentum relaxation of the particle, the vortex diffusion in the fluid, the obstruction of flow close to the interface, and the harmonic restoring forces due to the optical trap. We show that already a weak trapping force has a significant impact on the velocity autocorrelation function C(t)= at times where the hydrodynamic memory leads to an algebraic decay. The long-time behavior for the motion parallel and perpendicular to the wall is derived analytically and compared to numerical results. Then, we discuss the power spectral densities of the displacement and provide simple interpolation formulas. The theoretical predictions are finally compared to recent experimental observations.

cond-mat.soft↗

Persistent memory for a Brownian walker in a random array of obstacles

We show that for particles performing Brownian motion in a frozen array of scatterers long-time correlations emerge in the mean-square displacement. Defining the velocity autocorrelation function (VACF) via the second time-derivative of the mean-square displacement, power-law tails govern the long-time dynamics similar to the case of ballistic motion. The physical origin of the persistent memory is due to repeated encounters with the same obstacle which occurs naturally in Brownian dynamics without involving other scattering centers. This observation suggests that in this case the VACF exhibits these anomalies already at first order in the scattering density. Here we provide an analytic solution for the dynamics of a tracer for a dilute planar Lorentz gas and compare our results to computer simulations. Our result support the idea that quenched disorder provides a generic mechanism for persistent correlations irrespective of the microdynamics of the tracer particle.

cond-mat.stat-mech↗

Development of anomalous diffusion among crowding proteins

In cell membranes, proteins and lipids diffuse in a highly crowded and heterogeneous landscape, where aggregates and dense domains of proteins or lipids obstruct the path of diffusing molecules. In general, hindered motion gives rise to anomalous transport, though the nature of the onset of this behavior is still under debate and difficult to investigate experimentally. Here, we present a systematic study where proteins bound to supported lipid membranes diffuse freely in two dimensions, but are increasingly hindered by the presence of other like proteins. In our model system, the surface coverage of the protein avidin on the lipid bilayer is well controlled by varying the concentration of biotinylated lipid anchors. Using fluorescence correlation spectroscopy (FCS), we measure the time correlation function over long times and convert it to the mean-square displacement of the diffusing proteins. Our approach allows for high precision data and a clear distinction between anomalous and normal diffusion. It enables us to investigate the onset of anomalous diffusion, which takes place when the area coverage of membrane proteins increases beyond approximately 5%. This transition region exhibits pronounced spatial heterogeneities. Increasing the packing fraction further, transport becomes more and more anomalous, manifested in a decrease of the exponent of subdiffusion.

cond-mat.soft↗

The Localization Transition of the Two-Dimensional Lorentz Model

We investigate the dynamics of a single tracer particle performing Brownian motion in a two-dimensional course of randomly distributed hard obstacles. At a certain critical obstacle density, the motion of the tracer becomes anomalous over many decades in time, which is rationalized in terms of an underlying percolation transition of the void space. In the vicinity of this critical density the dynamics follows the anomalous one up to a crossover time scale where the motion becomes either diffusive or localized. We analyze the scaling behavior of the time-dependent diffusion coefficient D(t) including corrections to scaling. Away from the critical density, D(t) exhibits universal hydrodynamic long-time tails both in the diffusive as well as in the localized phase.

cond-mat.soft↗

Effective Perrin theory for the anisotropic diffusion of a strongly hindered rod

Slender rods in concentrated suspensions constitute strongly interacting systems with rich dynamics: transport slows down drastically and the anisotropy of the motion becomes arbitrarily large. We develop a mesoscopic description of the dynamics down to the length scale of the interparticle distance. Our theory is based on the exact solution of the Smoluchowski-Perrin equation; it is in quantitative agreement with extensive Brownian dynamics simulations in the dense regime. In particular, we show that the tube confinement is characterised by a power law decay of the intermediate scattering function with exponent 1/2.

cond-mat.soft↗

Cluster-resolved dynamic scaling theory and universal corrections for transport on percolating systems

For percolating systems, we propose a universal exponent relation connecting the leading corrections to scaling of the cluster size distribution with the dynamic corrections to the asymptotic transport behaviour at criticality. Our derivation is based on a cluster-resolved scaling theory unifying the scaling of both the cluster size distribution and the dynamics of a random walker. We corroborate our theoretical approach by extensive simulations for a site percolating square lattice and numerically determine both the static and dynamic correction exponents.

cond-mat.stat-mech↗

Enhanced Diffusion of a Needle in a Planar Course of Point Obstacles

The transport of an infinitely thin, hard rod in a random, dense array of point obstacles is investigated by molecular dynamics simulations. Our model mimics the sterically hindered dynamics in dense needle liquids. The center-of-mass diffusion exhibits a minimum, and transport becomes increasingly fast at higher densities. The diffusion coefficient diverges according to a power law in the density with an approximate exponent of 0.8. This observation is connected with a new divergent time scale, reflected in a zig-zag motion of the needle, a two-step decay of the velocity-autocorrelation function, and a negative plateau in the non-Gaussian parameter.

cond-mat.stat-mech↗

Entangled Dynamics of a Stiff Polymer

Entangled networks of stiff biopolymers exhibit complex dynamic response, emerging from the topological constraints that neighboring filaments impose upon each other. We propose a class of reference models for entanglement dynamics of stiff polymers and provide a quantitative foundation of the tube concept for stiff polymers. For an infinitely thin needle exploring a planar course of point obstacles, we have performed large-scale computer simulations proving the conjectured scaling relations from the fast transverse equilibration to the slowest process of orientational relaxation. We determine the rotational diffusion coefficient of the tracer, its angular confinement, the tube diameter and the orientational correlation functions.

cond-mat.soft↗

Anisotropic memory effects in confined colloidal diffusion

The motion of an optically trapped sphere constrained by the vicinity of a wall is investigated at times where hydrodynamic memory is significant. First, we quantify, in bulk, the influence of confinement arising from the trapping potential on the sphere's velocity autocorrelation function $C(t)$. Next, we study the splitting of $C(t)$ into $C_\parallel(t)$ and $C_\perp(t)$, when the sphere is approached towards a surface. Thereby, we monitor the crossover from a slow $t^{-3/2}$ long-time tail, away from the wall, to a faster $t^{-5/2}$ decay, due to the subtle interplay between hydrodynamic backflow and wall effects. Finally, we discuss the resulting asymmetric time-dependent diffusion coefficients.

cond-mat.soft↗

Microscale fluid flow induced by thermoviscous expansion along a traveling wave

The thermal expansion of a fluid combined with a temperature-dependent viscosity introduces nonlinearities in the Navier-Stokes equations unrelated to the convective momentum current. The couplings generate the possibility for net fluid flow at the microscale controlled by external heating. This novel thermo-mechanical effect is investigated for a thin fluid chamber by a numerical solution of the Navier-Stokes equations and analytically by a perturbation expansion. A demonstration experiment confirms the basic mechanism and quantitatively validates our theoretical analysis.

cond-mat.soft↗