arXiv subjects

Thomas Töws

Publications and source records attributed to Thomas Töws.

3 recordsLinked to original sources

arXiv2017

Lateral trapping of DNA inside a voltage gated nanopore

The translocation of a short DNA fragment through a nanopore is addressed when the perforated membrane contains an embedded electrode. Accurate numerical solutions of the coupled Poisson, Nernst-Planck, and Stokes equations for a realistic, fully three-dimensional setup as well as analytical approximations for a simplified model are worked out. By applying a suitable voltage to the membrane electrode, the DNA can be forced to preferably traverse the pore either along the pore axis or at a small but finite distance from the pore wall.

cond-mat.soft↗

arXiv2014

Reluctance of a neutral nanoparticle to enter a charged pore

We consider the translocation of a neutral (uncharged) nanoparticle through a pore in a thin membrane with constant surface charge density. If the concomitant Debye screening layer is sufficiently thin, the resulting forces experienced by the particle on its way through the pore are negligible. But when the Debye length becomes comparable to the pore diameter, the particle encounters a quite significant potential barrier while approaching and entering the pore, and symmetrically upon exiting the pore. The main reason is an increasing pressure which acts on the particle when it intrudes into the counter ion cloud of the Debye screening layer. In case the polarizability of the particle is different (usually smaller) than that of the ambient fluid, a second, much smaller contribution to the potential barrier is due to self-energy effects. Our numerical treatment of the problem is complemented by analytical approximations for sufficiently long cylindrical particles and pores, which agree very well with the numerics.

cond-mat.soft↗

arXiv2013

Opposite translocation of long and short oligomers through a nanopore

We consider elongated cylindrical particles, modeling e.g. DNA fragments or nano-rods, while translocating under the action of an externally applied voltage through a solid state nanopore. Particular emphasis is put on the concomitant potential energy landscape, encountered by the particle on its passage through the pore due to the complex interplay of various electrohydrodynamic effects beyond the realm of small Debye lengths. We find that the net potential energy difference across the membrane may be of opposite sign for short and long particles of equal diameters and charge densities (e.g. oligomers). Thermal noise thus leads to biased diffusion through the pore into opposite directions. By means of an additional membrane gate electrode it is even possible to control the specific particle length at which this transport inversion occurs.

cond-mat.soft↗