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Tiago L. Ribeiro

Publications and source records attributed to Tiago L. Ribeiro.

4 recordsLinked to original sources

Self-Organized Criticality in the Brain

Self-organized criticality (SOC) refers to the ability of complex systems to evolve towards a 2nd-order phase transition at which interactions between system components lead to scale-invariant events beneficial for system performance. For the last two decades, considerable experimental evidence accumulated that the mammalian cortex with its diversity in cell types and connections might exhibit SOC. Here we review experimental findings of isolated, layered cortex preparations to self-organize towards four dynamical motifs identified in the cortex in vivo: up-states, oscillations, neuronal avalanches, and coherence potentials. During up-states, the synchronization observed for nested theta/gamma-oscillations embeds scale-invariant neuronal avalanches that exhibit robust power law scaling in size with a slope of -3/2 and a critical branching parameter of 1. This dynamical coordination, tracked in the local field potential (nLFP) and pyramidal neuron activity using 2-photon imaging, emerges autonomously in superficial layers of organotypic cortex cultures and acute cortex slices, is homeostatically regulated, displays separation of time scales, and reveals unique size vs. quiet time dependencies. A threshold operation identifies coherence potentials; avalanches that in addition maintain the precise time course of propagated synchrony. Avalanches emerge under conditions of external driving. Control parameters are established by the balance of excitation and inhibition (E/I) and the neuromodulator dopamine. This rich dynamical repertoire is not observed in dissociated cortex cultures, which lack cortical layers and exhibit dynamics similar to a 1st-order phase transition. The precise interactions between up-states, nested oscillations, avalanches, and coherence potentials in superficial cortical layers provide compelling evidence for SOC in the brain.

q-bio.NC

Box-scaling as a proxy of finite-size correlations

The scaling of correlations as a function of system size provides important hints to understand critical phenomena on a variety of systems. Its study in biological systems offers two challenges: usually they are not of infinite size, and in the majority of cases sizes can not be varied at will. Here we discuss how finite-size scaling can be approximated in an experimental system of fixed and relatively small size by computing correlations inside of a reduced field of view of various sizes (i.e., "box-scaling"). Numerical simulations of a neuronal network are used to verify such approximation, as well as the ferromagnetic 2D Ising model. The numerical results support the validity of the heuristic approach, which should be useful to characterize relevant aspects of critical phenomena in biological systems.

cond-mat.dis-nn

Spike Avalanches Exhibit Universal Dynamics across the Sleep-Wake Cycle

Scale-invariant neuronal avalanches have been observed in cell cultures and slices as well as anesthetized and awake brains, suggesting that the brain operates near criticality, i.e. within a narrow margin between avalanche propagation and extinction. In theory, criticality provides many desirable features for the behaving brain, optimizing computational capabilities, information transmission, sensitivity to sensory stimuli and size of memory repertoires. However, a thorough characterization of neuronal avalanches in freely-behaving (FB) animals is still missing, thus raising doubts about their relevance for brain function. To address this issue, we employed chronically implanted multielectrode arrays (MEA) to record avalanches of spikes from the cerebral cortex (V1 and S1) and hippocampus (HP) of 14 rats, as they spontaneously traversed the wake-sleep cycle, explored novel objects or were subjected to anesthesia (AN). We then modeled spike avalanches to evaluate the impact of sparse MEA sampling on their statistics. We found that the size distribution of spike avalanches are well fit by lognormal distributions in FB animals, and by truncated power laws in the AN group. The FB data are also characterized by multiple key features compatible with criticality in the temporal domain, such as 1/f spectra and long-term correlations as measured by detrended fluctuation analysis. These signatures are very stable across waking, slow-wave sleep and rapid-eye-movement sleep, but collapse during anesthesia. Likewise, waiting time distributions obey a single scaling function during all natural behavioral states, but not during anesthesia. Results are equivalent for neuronal ensembles recorded from V1, S1 and HP. Altogether, the data provide a comprehensive link between behavior and brain criticality, revealing a unique scale-invariant regime of spike avalanches across all major behaviors.

q-bio.NC

Deterministic excitable media under Poisson drive: power law responses, spiral waves and dynamic range

When each site of a spatially extended excitable medium is independently driven by a Poisson stimulus with rate h, the interplay between creation and annihilation of excitable waves leads to an average activity F. It has recently been suggested that in the low-stimulus regime (h ~ 0) the response function F(h) of hypercubic deterministic systems behaves as a power law, F ~ h^m. Moreover the response exponent m has been predicted to depend only on the dimensionality d of the lattice, m = 1/(1+d) [T. Ohta and T. Yoshimura, Physica D 205, 189 (2005)]. In order to test this prediction, we study the response function of excitable lattices modeled by either coupled Morris-Lecar equations or Greenberg-Hastings cellular automata. We show that the prediction is verified in our model systems for d = 1, 2, and 3, provided that a minimum set of conditions is satisfied. Under these conditions, the dynamic range - which measures the range of stimulus intensities that can be coded by the network activity - increases with the dimensionality d of the network. The power law scenario breaks down, however, if the system can exhibit self-sustained activity (spiral waves). In this case, we recover a scenario that is common to probabilistic excitable media: as a function of the conductance coupling G among the excitable elements, the dynamic range is maximized precisely at the critical value G_c above which self-sustained activity becomes stable. We discuss the implications of these results in the context of neural coding.

q-bio.NC