arXiv subjects

Tianxi Li

Publications and source records attributed to Tianxi Li.

25 records · Page 2Linked to original sources

arXiv2020

Hierarchical community detection by recursive partitioning

The problem of community detection in networks is usually formulated as finding a single partition of the network into some "correct" number of communities. We argue that it is more interpretable and in some regimes more accurate to construct a hierarchical tree of communities instead. This can be done with a simple top-down recursive partitioning algorithm, starting with a single community and separating the nodes into two communities by spectral clustering repeatedly, until a stopping rule suggests there are no further communities. This class of algorithms is model-free, computationally efficient, and requires no tuning other than selecting a stopping rule. We show that there are regimes where this approach outperforms K-way spectral clustering, and propose a natural framework for analyzing the algorithm's theoretical performance, the binary tree stochastic block model. Under this model, we prove that the algorithm correctly recovers the entire community tree under relatively mild assumptions. We apply the algorithm to a gene network based on gene co-occurrence in 1580 research papers on anemia, and identify six clusters of genes in a meaningful hierarchy. We also illustrate the algorithm on a dataset of statistics papers.

stat.ME↗

arXiv2020

Network cross-validation by edge sampling

While many statistical models and methods are now available for network analysis, resampling network data remains a challenging problem. Cross-validation is a useful general tool for model selection and parameter tuning, but is not directly applicable to networks since splitting network nodes into groups requires deleting edges and destroys some of the network structure. Here we propose a new network resampling strategy based on splitting node pairs rather than nodes applicable to cross-validation for a wide range of network model selection tasks. We provide a theoretical justification for our method in a general setting and examples of how our method can be used in specific network model selection and parameter tuning tasks. Numerical results on simulated networks and on a citation network of statisticians show that this cross-validation approach works well for model selection.

stat.ME↗

arXiv2020

High-dimensional Gaussian graphical model for network-linked data

Graphical models are commonly used to represent conditional dependence relationships between variables. There are multiple methods available for exploring them from high-dimensional data, but almost all of them rely on the assumption that the observations are independent and identically distributed. At the same time, observations connected by a network are becoming increasingly common, and tend to violate these assumptions. Here we develop a Gaussian graphical model for observations connected by a network with potentially different mean vectors, varying smoothly over the network. We propose an efficient estimation algorithm and demonstrate its effectiveness on both simulated and real data, obtaining meaningful and interpretable results on a statistics coauthorship network. We also prove that our method estimates both the inverse covariance matrix and the corresponding graph structure correctly under the assumption of network â€œcohesionâ€, which refers to the empirically observed phenomenon of network neighbors sharing similar traits.

stat.ML↗

arXiv2018

Prediction models for network-linked data

Prediction algorithms typically assume the training data are independent samples, but in many modern applications samples come from individuals connected by a network. For example, in adolescent health studies of risk-taking behaviors, information on the subjects' social network is often available and plays an important role through network cohesion, the empirically observed phenomenon of friends behaving similarly. Taking cohesion into account in prediction models should allow us to improve their performance. Here we propose a network-based penalty on individual node effects to encourage similarity between predictions for linked nodes, and show that incorporating it into prediction leads to improvement over traditional models both theoretically and empirically when network cohesion is present. The penalty can be used with many loss-based prediction methods, such as regression, generalized linear models, and Cox's proportional hazard model. Applications to predicting levels of recreational activity and marijuana usage among teenagers from the AddHealth study based on both demographic covariates and friendship networks are discussed in detail and show that our approach to taking friendships into account can significantly improve predictions of behavior while providing interpretable estimates of covariate effects.

stat.ME↗

arXiv2018

Probabilistic Rule Realization and Selection

Abstraction and realization are bilateral processes that are key in deriving intelligence and creativity. In many domains, the two processes are approached through rules: high-level principles that reveal invariances within similar yet diverse examples. Under a probabilistic setting for discrete input spaces, we focus on the rule realization problem which generates input sample distributions that follow the given rules. More ambitiously, we go beyond a mechanical realization that takes whatever is given, but instead ask for proactively selecting reasonable rules to realize. This goal is demanding in practice, since the initial rule set may not always be consistent and thus intelligent compromises are needed. We formulate both rule realization and selection as two strongly connected components within a single and symmetric bi-convex problem, and derive an efficient algorithm that works at large scale. Taking music compositional rules as the main example throughout the paper, we demonstrate our model's efficiency in not only music realization (composition) but also music interpretation and understanding (analysis).

cs.LG↗

arXiv2016

High-dimensional Mixed Graphical Models

While graphical models for continuous data (Gaussian graphical models) and discrete data (Ising models) have been extensively studied, there is little work on graphical models linking both continuous and discrete variables (mixed data), which are common in many scientific applications. We propose a novel graphical model for mixed data, which is simple enough to be suitable for high-dimensional data, yet flexible enough to represent all possible graph structures. We develop a computationally efficient regression-based algorithm for fitting the model by focusing on the conditional log-likelihood of each variable given the rest. The parameters have a natural group structure, and sparsity in the fitted graph is attained by incorporating a group lasso penalty, approximated by a weighted $\ell_1$ penalty for computational efficiency. We demonstrate the effectiveness of our method through an extensive simulation study and apply it to a music annotation data set (CAL500), obtaining a sparse and interpretable graphical model relating the continuous features of the audio signal to categorical variables such as genre, emotions, and usage associated with particular songs. While we focus on binary discrete variables, we also show that the proposed methodology can be easily extended to general discrete variables.

stat.ML↗

arXiv2016

A note on the statistical view of matrix completion

A very simple interpretation of matrix completion problem is introduced based on statistical models. Combined with the well-known results from missing data analysis, such interpretation indicates that matrix completion is still a valid and principled estimation procedure even without the missing completely at random (MCAR) assumption, which almost all of the current theoretical studies of matrix completion assume.

stat.ML↗