arXiv subjects

Tianxiang Xu

Publications and source records attributed to Tianxiang Xu.

At least 19 recordsLinked to original sources

arXiv2026

The Data Problem in Software Vulnerability Analysis: Artifacts, Quality, and Consumption

Learning- and LLM-based software vulnerability analysis is only as trustworthy as the data it is trained and evaluated on, yet that data is rarely examined as a first-class object. We investigate the data behind vulnerability analysis through a dataset-centric taxonomy that separates what an artifact is (code, metadata, patches, tests/PoCs, reasoning, traces), how good it is (realism, label evidence, scale, diversity, leakage, availability), and what it is used for. From a systematically assembled corpus of 1522 papers covering 2016-2026 plus foundational earlier work we deep-code a tiered set of 111 anchor papers, backing every affirmative rubric-graded value with a verbatim span, and we report, per attribute, both how much it has been studied and how well datasets achieve it. The results trace an evidence ladder: executable artifacts are the only major type where 15 of the 24 datasets are both graded real-world and carry labels that received an independent check, while code-sample datasets-the largest category in both the auto-tagged corpus and the anchor set-are the least realistic: 20 of the 41 draw their vulnerabilities from authentic projects or CVEs, but only 3 keep the sample at the unit the code is deployed in, and only 2 do both-though these are coarse component tests, and just one code-sample dataset meets the codebook's stricter full-context real-world grade. Among these, leakage goes unaddressed by 49 of the 90 datasets where it applies, more than a quarter say nothing about availability, reasoning data has arrived only recently and is mostly model-generated, and primary trace corpora remain limited to three datasets, the total after a corpus-wide screen and a full-text check of every candidate it surfaced, with further datasets releasing traces secondarily behind benchmarks and harnesses.

cs.SE↗

arXiv2026

BrainRiem: Riemannian Prototype Learning for Source-Free Cross-Site Brain Network Diagnosis

Multi-site functional MRI (fMRI) studies are essential for robust neuropsychiatric diagnosis yet suffer severe domain shifts from scanner heterogeneity, demographics, and site-specific acquisition protocols. Traditional domain adaptation requires concurrent source and target data access, violating clinical privacy regulations. Moreover, functional connectivity matrices lie on the Symmetric Positive Definite (SPD) manifold, where Euclidean operations cause geometric distortions corrupting diagnostic patterns. We propose BrainRiem, a source-free domain adaptation framework learning compact Riemannian brain prototypes via manifold-aware bi-level optimization. It employs the Log-Euclidean Metric to ensure prototypes remain valid SPD matrices, while Dirichlet Energy spectral calibration aligns their frequency characteristics with real brain networks. Only anonymized prototypes are transmitted to target sites, serving as stable anchors for training local models without source data access and reducing leakage under the evaluated attacks. Comprehensive experiments on ABIDE and REST-meta-MDD show BrainRiem consistently outperforms state-of-the-art source-free, traditional, and graph domain adaptation methods across diverse scanners and demographics. Notably, learned prototypes exhibit biologically interpretable connectivity patterns aligning with established neuroscience findings, validating the necessity of Riemannian geometry for brain network analysis.

cs.LG↗

arXiv2026

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software

Software defect detection is a critical task in software engineering. However, no prior studies have specifically addressed defect detection in bioinformatics software. Given that the performance of defect detection tasks is primarily influenced by both models and datasets, our experiments controlled for model-related factors and confirmed the limitations of existing datasets in bioinformatics software. To address this issue, we introduce BioDefect, the first dataset specifically designed for defect detection in bioinformatics software, aiming to overcome the limitations of existing datasets in this context. Unlike prior datasets, BioDefect includes complete source code repositories, preserving the actual contextual information of defective code, thereby more accurately reflecting real-world defect scenarios in bioinformatics software. Additionally, BioDefect mitigates issues related to label inconsistency and data leakage, ensuring high data quality and experimental reliability. To evaluate the effectiveness of BioDefect, we conduct a systematic assessment on nine language models (LMs), including DeepSeek-R1. The results demonstrate that BioDefect significantly enhances defect detection performance for bioinformatics software. Compared to existing datasets, BioDefect achieves an average F1-score improvement of 29.61% to 38.04% across all models, highlighting its superior advantages. This study fills a critical research gap in bioinformatics software defect detection, laying a foundation for future studies in this field and offering new insights for improving bioinformatics software quality assurance.

cs.SE↗

arXiv2026

ClaHF: A Human Feedback-inspired Reinforcement Learning Framework for Improving Classification Tasks

Text classification models are typically trained via supervised fine-tuning (SFT). However, SFT essentially performs behavior cloning from instance-wise labels and thus fails to adequately capture relative preference relations among samples, which limits the model's ability to shape decision boundaries and calibrate predictive confidence. In this paper, we propose ClaHF, a human feedback-inspired reinforcement learning (RL) framework for text classification that integrates preference modeling and RL optimization into the classification pipeline without requiring additional human annotations. Unlike prior work that relies solely on instance-wise supervision, ClaHF constructs multiple candidate predictions together with their relative ranking relations, and jointly models the Top-1 preference and the ordering among non-optimal candidates within a reward model (RM). This design converts conventional label supervision into preference signals that are directly applicable to policy optimization. We conduct systematic evaluations on eight classification tasks spanning three categories of scenarios. Results demonstrate that ClaHF consistently improves both classification performance and confidence calibration across diverse language models (LMs). The data and code are available at https://anonymous.4open.science/r/ClaHF.

cs.LG↗

arXiv2026

Do Papers Tell the Whole Story? A Benchmark and Framework for Uncovering Hidden Implementation Gaps in Bioinformatics

Ensuring consistency between research papers and their corresponding software code implementations is a fundamental prerequisite for guaranteeing the reproducibility of scientific findings and the reliability of software systems. However, this issue has received limited attention to date, particularly in the field of bioinformatics, where inconsistencies between methodological descriptions in papers and their actual code implementations are prevalent. To address this gap, we introduce a novel research task, namely paper-code consistency detection, which aims to characterize the cross-modal semantic alignment between methodological descriptions in papers and their corresponding code implementations. At the data level, we construct the first benchmark dataset for this task in the bioinformatics domain, termed BioCon, comprising 48 bioinformatics software projects and their associated publications. BioCon is built by fine-grained alignment between sentence-level methodological descriptions in papers and function-level code snippets, combined with expert annotation and hard negative sampling strategies, resulting in a high-quality sentence-code paired dataset. At the methodological level, we propose a unified cross-modal consistency detection framework that leverages pre-trained models to jointly encode paper sentences and code functions. We conduct a systematic analysis from three perspectives: sentence-level classification, cross-modal retrieval, and project-level consistency assessment. Experimental results demonstrate that the proposed approach achieves strong performance in both consistency discrimination and semantic alignment. Overall, this work establishes the first systematic benchmark and framework for paper-code consistency analysis, opening a new research direction and providing a foundation for improving reproducibility and reliability in bioinformatics software.

cs.LG↗

arXiv2026

GTCN-G: A Residual Graph-Temporal Fusion Network for Imbalanced Intrusion Detection

The escalating complexity of network threats and the inherent class imbalance in traffic data present formidable challenges for modern Intrusion Detection Systems (IDS). While Graph Neural Networks (GNNs) excel in modeling topological structures and Temporal Convolutional Networks (TCNs) are proficient in capturing time-series dependencies, a framework that synergistically integrates both while explicitly addressing data imbalance remains an open challenge. This paper introduces a novel deep learning framework, named Gated Temporal Convolutional Network and Graph (GTCN-G), engineered to overcome these limitations. Our model uniquely fuses a Gated TCN (G-TCN) for extracting hierarchical temporal features from network flows with a Graph Convolutional Network (GCN) designed to learn from the underlying graph structure. The core innovation lies in the integration of a residual learning mechanism, implemented via a Graph Attention Network (GAT). This mechanism preserves original feature information through residual connections, which is critical for mitigating the class imbalance problem and enhancing detection sensitivity for rare malicious activities (minority classes). We conducted extensive experiments on two public benchmark datasets, UNSW-NB15 and ToN-IoT, to validate our approach. The empirical results demonstrate that the proposed GTCN-G model achieves state-of-the-art performance, significantly outperforming existing baseline models in both binary and multi-class classification tasks.

cs.LG↗

arXiv2026

dMLLM-TTS: Self-Verified and Efficient Test-Time Scaling for Diffusion Multi-Modal Large Language Models

Diffusion Multi-modal Large Language Models (dMLLMs) have recently emerged as a novel architecture unifying image generation and understanding. However, developing effective and efficient Test-Time Scaling (TTS) methods to unlock their full generative potential remains an underexplored challenge. To address this, we propose dMLLM-TTS, a novel framework operating on two complementary scaling axes: (1) trajectory exploration scaling to enhance the diversity of generated hypotheses, and (2) iterative refinement scaling for stable generation. Conventional TTS approaches typically perform linear search across these two dimensions, incurring substantial computational costs of O(NT) and requiring an external verifier for best-of-N selection. To overcome these limitations, we propose two innovations. First, we design an efficient hierarchical search algorithm with O(N+T) complexity that adaptively expands and prunes sampling trajectories. Second, we introduce a self-verified feedback mechanism that leverages the dMLLMs' intrinsic image understanding capabilities to assess text-image alignment, eliminating the need for external verifier. Extensive experiments on the GenEval benchmark across three representative dMLLMs (e.g., Lumina-DiMOO, MMaDA, Muddit) show that our framework substantially improves generation quality while achieving up to 6x greater efficiency than linear search. Project page: https://github.com/Alpha-VLLM/Lumina-DiMOO.

cs.CV↗

arXiv2026

Hierarchical Dual-Strategy Unlearning for Biomedical and Healthcare Intelligence Using Imperfect and Privacy-Sensitive Medical Data

Large language models (LLMs) exhibit exceptional performance but pose substantial privacy risks due to training data memorization, particularly within healthcare contexts involving imperfect or privacy-sensitive patient information. We present a hierarchical dual-strategy framework for selective knowledge unlearning that precisely removes specialized knowledge while preserving fundamental medical competencies. Our approach synergistically integrates geometric-constrained gradient updates to selectively modulate target parameters with concept-aware token-level interventions that distinguish between preservation-critical and unlearning-targeted tokens via a unified four-level medical concept hierarchy. Comprehensive evaluations on the MedMCQA (surgical) and MHQA (anxiety, depression, trauma) datasets demonstrate superior performance, achieving an 82.7% forgetting rate and 88.5% knowledge preservation. Notably, our framework maintains robust privacy guarantees while requiring modification of only 0.1% of parameters, addressing critical needs for regulatory compliance, auditability, and ethical standards in clinical research.

cs.LG↗

arXiv2026

S-Path-RAG: Semantic-Aware Shortest-Path Retrieval Augmented Generation for Multi-Hop Knowledge Graph Question Answering

We present S-Path-RAG, a semantic-aware shortest-path Retrieval-Augmented Generation framework designed to improve multi-hop question answering over large knowledge graphs. S-Path-RAG departs from one-shot, text-heavy retrieval by enumerating bounded-length, semantically weighted candidate paths using a hybrid weighted $k$-shortest, beam, and constrained random-walk strategy, learning a differentiable path scorer together with a contrastive path encoder and lightweight verifier, and injecting a compact soft mixture of selected path latents into a language model via cross-attention. The system runs inside an iterative Neural-Socratic Graph Dialogue loop in which concise diagnostic messages produced by the language model are mapped to targeted graph edits or seed expansions, enabling adaptive retrieval when the model expresses uncertainty. This combination yields a retrieval mechanism that is both token-efficient and topology-aware while preserving interpretable path-level traces for diagnostics and intervention. We validate S-Path-RAG on standard multi-hop KGQA benchmarks and through ablations and diagnostic analyses. The results demonstrate consistent improvements in answer accuracy, evidence coverage, and end-to-end efficiency compared to strong graph- and LLM-based baselines. We further analyze trade-offs between semantic weighting, verifier filtering, and iterative updates, and report practical recommendations for deployment under constrained compute and token budgets.

cs.CL↗

arXiv2026

Quark Medical Alignment: A Holistic Multi-Dimensional Alignment and Collaborative Optimization Paradigm

While reinforcement learning for large language model alignment has progressed rapidly in recent years, transferring these paradigms to high-stakes medical question answering reveals a fundamental paradigm mismatch. Reinforcement Learning from Human Feedback relies on preference annotations that are prohibitively expensive and often fail to reflect the absolute correctness of medical facts. Reinforcement Learning from Verifiable Rewards lacks effective automatic verifiers and struggles to handle complex clinical contexts. Meanwhile, medical alignment requires the simultaneous optimization of correctness, safety, and compliance, yet multi-objective heterogeneous reward signals are prone to scale mismatch and optimization conflicts. To address these challenges, we propose a robust medical alignment paradigm. We first construct a holistic multi-dimensional medical alignment matrix that decomposes alignment objectives into four categories: fundamental capabilities, expert knowledge, online feedback, and format specifications. Within each category, we establish a closed loop of where observable metrics inform attributable diagnosis, which in turn drives optimizable rewards, thereby providing fine-grained, high-resolution supervision signals for subsequent iterative optimization. To resolve gradient domination and optimization instability problem caused by heterogeneous signals, we further propose a unified optimization mechanism. This mechanism employs Reference-Frozen Normalization to align reward scales and implements a Tri-Factor Adaptive Dynamic Weighting strategy to achieve collaborative optimization that is weakness-oriented, risk-prioritized, and redundancy-reducing. Experimental results demonstrate the effectiveness of our proposed paradigm in real-world medical scenario evaluations, establishing a new paradigm for complex alignment in vertical domains.

cs.AI↗

arXiv2026

SR3R: Rethinking Super-Resolution 3D Reconstruction With Feed-Forward Gaussian Splatting

3D super-resolution (3DSR) aims to reconstruct high-resolution (HR) 3D scenes from low-resolution (LR) multi-view images. Existing methods rely on dense LR inputs and per-scene optimization, which restricts the high-frequency priors for constructing HR 3D Gaussian Splatting (3DGS) to those inherited from pretrained 2D super-resolution (2DSR) models. This severely limits reconstruction fidelity, cross-scene generalization, and real-time usability. We propose to reformulate 3DSR as a direct feed-forward mapping from sparse LR views to HR 3DGS representations, enabling the model to autonomously learn 3D-specific high-frequency geometry and appearance from large-scale, multi-scene data. This fundamentally changes how 3DSR acquires high-frequency knowledge and enables robust generalization to unseen scenes. Specifically, we introduce SR3R, a feed-forward framework that directly predicts HR 3DGS representations from sparse LR views via the learned mapping network. To further enhance reconstruction fidelity, we introduce Gaussian offset learning and feature refinement, which stabilize reconstruction and sharpen high-frequency details. SR3R is plug-and-play and can be paired with any feed-forward 3DGS reconstruction backbone: the backbone provides an LR 3DGS scaffold, and SR3R upscales it to an HR 3DGS. Extensive experiments across three 3D benchmarks demonstrate that SR3R surpasses state-of-the-art (SOTA) 3DSR methods and achieves strong zero-shot generalization, even outperforming SOTA per-scene optimization methods on unseen scenes.

cs.CV↗

arXiv2026

Tighnari v2: Mitigating Label Noise and Distribution Shift in Multimodal Plant Distribution Prediction via Mixture of Experts and Weakly Supervised Learning

Large-scale, cross-species plant distribution prediction plays a crucial role in biodiversity conservation, yet modeling efforts in this area still face significant challenges due to the sparsity and bias of observational data. Presence-Absence (PA) data provide accurate and noise-free labels, but are costly to obtain and limited in quantity; Presence-Only (PO) data, by contrast, offer broad spatial coverage and rich spatiotemporal distribution, but suffer from severe label noise in negative samples. To address these real-world constraints, this paper proposes a multimodal fusion framework that fully leverages the strengths of both PA and PO data. We introduce an innovative pseudo-label aggregation strategy for PO data based on the geographic coverage of satellite imagery, enabling geographic alignment between the label space and remote sensing feature space. In terms of model architecture, we adopt Swin Transformer Base as the backbone for satellite imagery, utilize the TabM network for tabular feature extraction, retain the Temporal Swin Transformer for time-series modeling, and employ a stackable serial tri-modal cross-attention mechanism to optimize the fusion of heterogeneous modalities. Furthermore, empirical analysis reveals significant geographic distribution shifts between PA training and test samples, and models trained by directly mixing PO and PA data tend to experience performance degradation due to label noise in PO data. To address this, we draw on the mixture-of-experts paradigm: test samples are partitioned according to their spatial proximity to PA samples, and different models trained on distinct datasets are used for inference and post-processing within each partition. Experiments on the GeoLifeCLEF 2025 dataset demonstrate that our approach achieves superior predictive performance in scenarios with limited PA coverage and pronounced distribution shifts.

cs.CV↗

arXiv2026

Weak to Strong: VLM-Based Pseudo-Labeling as a Weakly Supervised Training Strategy in Multimodal Video-based Hidden Emotion Understanding Tasks

To tackle the automatic recognition of "concealed emotions" in videos, this paper proposes a multimodal weak-supervision framework and achieves state-of-the-art results on the iMiGUE tennis-interview dataset. First, YOLO 11x detects and crops human portraits frame-by-frame, and DINOv2-Base extracts visual features from the cropped regions. Next, by integrating Chain-of-Thought and Reflection prompting (CoT + Reflection), Gemini 2.5 Pro automatically generates pseudo-labels and reasoning texts that serve as weak supervision for downstream models. Subsequently, OpenPose produces 137-dimensional key-point sequences, augmented with inter-frame offset features; the usual graph neural network backbone is simplified to an MLP to efficiently model the spatiotemporal relationships of the three key-point streams. An ultra-long-sequence Transformer independently encodes both the image and key-point sequences, and their representations are concatenated with BERT-encoded interview transcripts. Each modality is first pre-trained in isolation, then fine-tuned jointly, with pseudo-labeled samples merged into the training set for further gains. Experiments demonstrate that, despite severe class imbalance, the proposed approach lifts accuracy from under 0.6 in prior work to over 0.69, establishing a new public benchmark. The study also validates that an "MLP-ified" key-point backbone can match - or even surpass - GCN-based counterparts in this task.

cs.CV↗

arXiv2026

PhysicsMind: Sim and Real Mechanics Benchmarking for Physical Reasoning and Prediction in Foundational VLMs and World Models

Modern foundational Multimodal Large Language Models (MLLMs) and video world models have advanced significantly in mathematical, common-sense, and visual reasoning, but their grasp of the underlying physics remains underexplored. Existing benchmarks attempting to measure this matter rely on synthetic, Visual Question Answer templates or focus on perceptual video quality that is tangential to measuring how well the video abides by physical laws. To address this fragmentation, we introduce PhysicsMind, a unified benchmark with both real and simulation environments that evaluates law-consistent reasoning and generation over three canonical principles: Center of Mass, Lever Equilibrium, and Newton's First Law. PhysicsMind comprises two main tasks: i) VQA tasks, testing whether models can reason and determine physical quantities and values from images or short videos, and ii) Video Generation(VG) tasks, evaluating if predicted motion trajectories obey the same center-of-mass, torque, and inertial constraints as the ground truth. A broad range of recent models and video generation models is evaluated on PhysicsMind and found to rely on appearance heuristics while often violating basic mechanics. These gaps indicate that current scaling and training are still insufficient for robust physical understanding, underscoring PhysicsMind as a focused testbed for physics-aware multimodal models. Our data will be released upon acceptance.

cs.CV↗

arXiv2026

Adaptive Disentangled Representation Learning for Incomplete Multi-View Multi-Label Classification

Multi-view multi-label learning frequently suffers from simultaneous feature absence and incomplete annotations, due to challenges in data acquisition and cost-intensive supervision. To tackle the complex yet highly practical problem while overcoming the existing limitations of feature recovery, representation disentanglement, and label semantics modeling, we propose an Adaptive Disentangled Representation Learning method (ADRL). ADRL achieves robust view completion by propagating feature-level affinity across modalities with neighborhood awareness, and reinforces reconstruction effectiveness by leveraging a stochastic masking strategy. Through disseminating category-level association across label distributions, ADRL refines distribution parameters for capturing interdependent label prototypes. Besides, we formulate a mutual-information-based objective to promote consistency among shared representations and suppress information overlap between view-specific representation and other modalities. Theoretically, we derive the tractable bounds to train the dual-channel network. Moreover, ADRL performs prototype-specific feature selection by enabling independent interactions between label embeddings and view representations, accompanied by the generation of pseudo-labels for each category. The structural characteristics of the pseudo-label space are then exploited to guide a discriminative trade-off during view fusion. Finally, extensive experiments on public datasets and real-world applications demonstrate the superior performance of ADRL.

cs.CV↗

arXiv2025

Adaptive Detector-Verifier Framework for Zero-Shot Polyp Detection in Open-World Settings

Polyp detectors trained on clean datasets often underperform in real-world endoscopy, where illumination changes, motion blur, and occlusions degrade image quality. Existing approaches struggle with the domain gap between controlled laboratory conditions and clinical practice, where adverse imaging conditions are prevalent. In this work, we propose AdaptiveDetector, a novel two-stage detector-verifier framework comprising a YOLOv11 detector with a vision-language model (VLM) verifier. The detector adaptively adjusts per-frame confidence thresholds under VLM guidance, while the verifier is fine-tuned with Group Relative Policy Optimization (GRPO) using an asymmetric, cost-sensitive reward function specifically designed to discourage missed detections -- a critical clinical requirement. To enable realistic assessment under challenging conditions, we construct a comprehensive synthetic testbed by systematically degrading clean datasets with adverse conditions commonly encountered in clinical practice, providing a rigorous benchmark for zero-shot evaluation. Extensive zero-shot evaluation on synthetically degraded CVC-ClinicDB and Kvasir-SEG images demonstrates that our approach improves recall by 14 to 22 percentage points over YOLO alone, while precision remains within 0.7 points below to 1.7 points above the baseline. This combination of adaptive thresholding and cost-sensitive reinforcement learning achieves clinically aligned, open-world polyp detection with substantially fewer false negatives, thereby reducing the risk of missed precancerous polyps and improving patient outcomes.

cs.CV↗

arXiv2025

Holographic Transformers for Complex-Valued Signal Processing: Integrating Phase Interference into Self-Attention

Complex-valued signals encode both amplitude and phase, yet most deep models treat attention as real-valued correlation, overlooking interference effects. We introduce the Holographic Transformer, a physics-inspired architecture that incorporates wave interference principles into self-attention. Holographic attention modulates interactions by relative phase and coherently superimposes values, ensuring consistency between amplitude and phase. A dual-headed decoder simultaneously reconstructs the input and predicts task outputs, preventing phase collapse when losses prioritize magnitude over phase. We demonstrate that holographic attention implements a discrete interference operator and maintains phase consistency under linear mixing. Experiments on PolSAR image classification and wireless channel prediction show strong performance, achieving high classification accuracy and F1 scores, low regression error, and increased robustness to phase perturbations. These results highlight that enforcing physical consistency in attention leads to generalizable improvements in complex-valued learning and provides a unified, physics-based framework for coherent signal modeling. The code is available at https://github.com/EonHao/Holographic-Transformers.

eess.SP↗

arXiv2025

L2M-AID: Autonomous Cyber-Physical Defense by Fusing Semantic Reasoning of Large Language Models with Multi-Agent Reinforcement Learning (Preprint)

The increasing integration of Industrial IoT (IIoT) exposes critical cyber-physical systems to sophisticated, multi-stage attacks that elude traditional defenses lacking contextual awareness. This paper introduces L2M-AID, a novel framework for Autonomous Industrial Defense using LLM-empowered, Multi-agent reinforcement learning. L2M-AID orchestrates a team of collaborative agents, each driven by a Large Language Model (LLM), to achieve adaptive and resilient security. The core innovation lies in the deep fusion of two AI paradigms: we leverage an LLM as a semantic bridge to translate vast, unstructured telemetry into a rich, contextual state representation, enabling agents to reason about adversary intent rather than merely matching patterns. This semantically-aware state empowers a Multi-Agent Reinforcement Learning (MARL) algorithm, MAPPO, to learn complex cooperative strategies. The MARL reward function is uniquely engineered to balance security objectives (threat neutralization) with operational imperatives, explicitly penalizing actions that disrupt physical process stability. To validate our approach, we conduct extensive experiments on the benchmark SWaT dataset and a novel synthetic dataset generated based on the MITRE ATT&CK for ICS framework. Results demonstrate that L2M-AID significantly outperforms traditional IDS, deep learning anomaly detectors, and single-agent RL baselines across key metrics, achieving a 97.2% detection rate while reducing false positives by over 80% and improving response times by a factor of four. Crucially, it demonstrates superior performance in maintaining physical process stability, presenting a robust new paradigm for securing critical national infrastructure.

cs.AI↗