arXiv subjects

Timothée Tabouy

Publications and source records attributed to Timothée Tabouy.

3 recordsLinked to original sources

arXiv2021

missSBM: An R Package for Handling Missing Values in the Stochastic Block Model

The Stochastic Block Model (SBM) is a popular probabilistic model for random graphs. It is commonly used for clustering network data by aggregating nodes that share similar connectivity patterns into blocks. When fitting an SBM to a network which is partially observed, it is important to take into account the underlying process that generates the missing values, otherwise the inference may be biased. This paper introduces missSBM, an R-package fitting the SBM when the network is partially observed, i.e., the adjacency matrix contains not only 1's or 0's encoding presence or absence of edges but also NA's encoding missing information between pairs of nodes. This package implements a set of algorithms for fitting the binary SBM, possibly in the presence of external covariates, by performing variational inference adapted to several observation processes. Our implementation automatically explores different block numbers to select the most relevant model according to the Integrated Classification Likelihood (ICL) criterion. The ICL criterion can also help determine which observation process better corresponds to a given dataset. Finally, missSBM can be used to perform imputation of missing entries in the adjacency matrix. We illustrate the package on a network data set consisting of interactions between political blogs sampled during the French presidential election in 2007.

stat.CO↗

arXiv2020

Consistency and Asymptotic Normality of Stochastic Block Models Estimators from Sampled Data

Statistical analysis of network is an active research area and the literature counts a lot of papers concerned with network models and statistical analysis of networks. However, very few papers deal with missing data in network analysis and we reckon that, in practice, networks are often observed with missing values. In this paper we focus on the Stochastic Block Model with valued edges and consider a MCAR setting by assuming that every dyad (pair of nodes) is sampled identically and independently of the others with probability $ρ> 0$. We prove that maximum likelihood estimators and its variational approximations are consistent and asymptotically normal in the presence of missing data as soon as the sampling probability $ρ$ satisfies $ρ\gg\log(n)/n$.

math.ST↗

arXiv2019

Variational Inference for Stochastic Block Models from Sampled Data

This paper deals with non-observed dyads during the sampling of a network and consecutive issues in the inference of the Stochastic Block Model (SBM). We review sampling designs and recover Missing At Random (MAR) and Not Missing At Random (NMAR) conditions for the SBM. We introduce variants of the variational EM algorithm for inferring the SBM under various sampling designs (MAR and NMAR) all available as an R package. Model selection criteria based on Integrated Classification Likelihood are derived for selecting both the number of blocks and the sampling design. We investigate the accuracy and the range of applicability of these algorithms with simulations. We explore two real-world networks from ethnology (seed circulation network) and biology (protein-protein interaction network), where the interpretations considerably depends on the sampling designs considered.

stat.ME↗